FFCP PHASE1:Hg19::chr15:56209327..56209344,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4734 | |EntrezGene=4734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7727 | |HGNC=7727 | ||
|TSSclassifier=strong | |||
|UniProt=P46934 | |UniProt=P46934 | ||
|association_with_transcript=0bp_to_ENST00000338963,ENST00000508342,NM_198400,uc002adi.2,uc002adj.2,uc002adk.2,uc010bfm.2,uc010ugj.1_5end | |association_with_transcript=0bp_to_ENST00000338963,ENST00000508342,NM_198400,uc002adi.2,uc002adj.2,uc002adk.2,uc010bfm.2,uc010ugj.1_5end | ||
|cluster_id=chr15:56209327..56209344,- | |||
|description=CAGE_peak_3_at_NEDD4_5end | |description=CAGE_peak_3_at_NEDD4_5end | ||
|id=chr15:56209327..56209344,- | |id=chr15:56209327..56209344,- | ||
|ontology_enrichment_celltype=CL:0000055!3.58e-29!180;CL:0000057!6.04e-18!75;CL:0002620!2.97e-11!23;CL:0000680!4.51e-10!57;CL:0000056!4.51e-10!57;CL:0000355!4.51e-10!57;CL:0000220!2.01e-09!246;CL:0002321!4.87e-09!248;CL:0000187!1.19e-08!54;CL:0000192!8.66e-08!42;CL:0000514!8.66e-08!42;CL:0000183!1.67e-07!59;CL:0000393!2.20e-07!60;CL:0000211!2.20e-07!60;CL:0000359!2.66e-07!32 | |ontology_enrichment_celltype=CL:0000055!3.58e-29!180;CL:0000057!6.04e-18!75;CL:0002620!2.97e-11!23;CL:0000680!4.51e-10!57;CL:0000056!4.51e-10!57;CL:0000355!4.51e-10!57;CL:0000220!2.01e-09!246;CL:0002321!4.87e-09!248;CL:0000187!1.19e-08!54;CL:0000192!8.66e-08!42;CL:0000514!8.66e-08!42;CL:0000183!1.67e-07!59;CL:0000393!2.20e-07!60;CL:0000211!2.20e-07!60;CL:0000359!2.66e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.42e-12;23!CL:0000057;2.53e-07;73!CL:0002539;4.86e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.04e-16,76;CL:0002620,2.50e-12,23;CL:0002321,2.27e-08,250;CL:0000680,2.48e-07,58;CL:0000056,2.48e-07,58;CL:0000355,2.48e-07,58;CL:0002539,2.53e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.62e-18!83;UBERON:0002329!1.62e-18!83;UBERON:0003077!1.62e-18!83;UBERON:0003059!1.62e-18!83;UBERON:0007282!1.62e-18!83;UBERON:0009618!1.62e-18!83;UBERON:0007285!1.62e-18!83;UBERON:0000475!7.70e-18!365;UBERON:0000486!2.38e-15!82;UBERON:0003102!3.63e-15!95;UBERON:0004290!1.37e-13!70;UBERON:0000481!3.65e-13!347;UBERON:0001134!4.11e-11!61;UBERON:0002036!4.11e-11!61;UBERON:0003082!4.11e-11!61;UBERON:0002385!1.43e-10!63;UBERON:0001015!1.43e-10!63;UBERON:0000383!1.43e-10!63;UBERON:0005256!1.66e-10!143;UBERON:0002100!2.10e-09!216;UBERON:0003104!7.26e-09!238;UBERON:0009142!7.26e-09!238;UBERON:0002097!8.64e-09!40;UBERON:0000467!1.54e-08!625;UBERON:0000480!2.17e-08!626;UBERON:0002199!2.56e-08!45;UBERON:0002416!2.56e-08!45;UBERON:0000165!3.88e-08!28;UBERON:0000930!3.88e-08!28;UBERON:0000468!4.33e-08!659;UBERON:0001004!2.25e-07!72;UBERON:0001828!6.10e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;9.18e-12;31!UBERON:0001015;9.18e-12;31!UBERON:0000383;9.18e-12;31!UBERON:0000165;2.08e-09;28!UBERON:0003729;6.94e-09;13!UBERON:0001828;2.30e-08;8!UBERON:0002204;3.75e-08;70!UBERON:0000344;5.51e-08;20!UBERON:0011137;2.84e-07;11!UBERON:0010323;2.84e-07;11!UBERON:0001134;4.06e-07;16!UBERON:0002036;4.06e-07;16!UBERON:0004237;4.86e-07;10!UBERON:0004695;4.86e-07;10!UBERON:0002111;4.86e-07;10!UBERON:0004178;4.86e-07;10!UBERON:0002097;7.99e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.74e-18,99;UBERON:0000486,7.40e-13,83;UBERON:0007524,3.76e-11,73;UBERON:0002329,4.31e-11,71;UBERON:0003059,4.31e-11,71;UBERON:0007282,4.31e-11,71;UBERON:0004290,4.31e-11,71;UBERON:0009618,4.31e-11,71;UBERON:0003077,9.51e-11,72;UBERON:0007285,9.51e-11,72;UBERON:0000165,7.27e-10,29;UBERON:0000930,7.27e-10,29;UBERON:0002097,4.66e-09,41;UBERON:0003729,6.24e-09,13;UBERON:0007503,6.60e-09,78;UBERON:0001134,1.35e-08,62;UBERON:0002036,1.35e-08,62;UBERON:0003082,1.35e-08,62;UBERON:0001828,1.53e-08,8;UBERON:0002199,1.65e-08,46;UBERON:0002416,1.65e-08,46;UBERON:0000344,5.12e-08,20;UBERON:0002385,5.43e-08,64;UBERON:0001015,5.43e-08,64;UBERON:0000383,5.43e-08,64;UBERON:0010323,1.80e-07,11;UBERON:0004237,2.53e-07,10;UBERON:0004695,2.53e-07,10;UBERON:0002111,2.53e-07,10;UBERON:0004178,2.53e-07,10;UBERON:0011137,6.73e-07,14 | |||
|phase1_expression=0.54503513781167,0.428201047781966,1.9733616573436,0,1.34088328328186,0,0,1.89515962028049,0,0.491467873003018,0,0,0,1.60896258848061,0.331397375727916,6.72325146451775,4.82155622419182,5.11217063271161,6.34312638427659,0.246242116153576,0.204000691244253,0,3.72106783270374,6.15934912827979,3.89182182743889,0,0,0,0,0,0,2.75826367343678,0.90361775633475,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0.50133791063589,1.15877215168659,3.1811437882044,1.45990461090791,0.189069634328136,0.443458794925128,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,1.77883131343355,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,1.49091585508596,3.03913227994991,1.45650098894541,1.43418310374407,1.41867352879343,0.560677600142307,0,1.2333377420858,0.933633106199299,0.67355336034844,0.817309515567294,1.05950199351452,4.60940739583999,7.96692868234909,6.55536161343673,0.570471821544449,1.94283284717341,3.05329696473789,5.01806127541208,6.46073710830343,22.6611130092932,10.072414019565,12.5024195222676,8.31602000097437,1.97813543422845,0,0.718618141816238,15.31858636982,5.25497783462249,35.7412708974596,5.70670907145089,3.37136575378922,1.80285670687916,0.907457465280168,4.30535125653269,1.49490172172997,4.02670612203168,7.20218630602566,7.52283463440604,2.57640540045629,0.930584281657949,7.25738228637445,3.41029518064195,17.9227979713321,10.3095886479375,1.45481451136931,2.84007674013291,3.62707553619505,4.57813599238317,14.4945639872473,19.9104668031309,22.3707584403423,0,0,0,0,0,0,4.69348596989448,0,2.76269842704961,1.39310378409594,0.721879481669586,1.53798840051797,1.68584690078102,2.16909926895134,1.7647035637183,2.61455332910887,3.32178866755535,2.42696354688296,2.74710051175484,0.769494313892781,0,0,0,0,0,0,0,0,0,0.343135620597051,4.06076056011915,3.37205259772859,0.502644862058154,2.68506490959736,7.49359102213747,1.03993478527958,0,0.695582429850461,0,0,0,0.190254152234598,0,0,0,0,0,7.49870671894216,2.68771405118175,8.79005602902796,1.16426079513703,2.3250715081117,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.448524337381443,0.43596006883328,0.95339771567235,1.03417372606222,0,0,0,0,1.54324424557285,0,1.0656887160644,1.71573592389777,0,0,3.25736184293735,0.710783897485092,0,5.42590878707255,5.22920075160176,2.39935178836937,0,0,0,2.15662369942424,0,1.42636905040718,8.97644101338991,3.90405012845728,20.0548278828683,0.112085143993527,0,0,0,1.52456774533478,1.30139853857622,0,1.00509759200609,1.27587750330633,0,0,0,1.2269149171914,1.00034104211935,0.542530047399471,4.57535895367776,5.53129865271201,4.1002627908823,6.2084949946138,1.80567659836631,0,0,13.2845119707087,4.05612170791747,7.73264168765937,0,0.343143423810856,0,0,0,3.33440328590885,0,0,0.248107807818777,0.767309866440312,0.561320188866147,1.40953064181271,1.02341449813341,0.64341568457443,0,1.69630663182921,0.355123450626254,3.12083192852475,3.11552657510173,1.62694529843943,0,0.200506470303285,0,1.7222167224691,9.83292307236272,1.04899531967539,0.902399225814824,8.16362573306797,0,0,0.949964660035881,0,0,0.215915916102139,0,0.541892875087706,0,2.80363900349542,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.915694648183434,2.31026599777646,0,1.30012049207304,1.6068392984416,2.12675580242668,1.69453478826109,0.460511024178389,1.10269257987624,2.47066563197029,1.0151168573996,1.36362603865761,1.51354460599453,3.30569830721956,0.960950336825531,12.5060458244692,0.809262246844399,1.85938219718914,4.09256050879832,2.7881490806424,1.54016790088044,1.59691809095107,5.21959795245044,2.22389062924704,0.572499546967965,0.372158369359667,0.949138274156178,0.38126038784765,0.255897791311334,1.28381696410176,2.86382923133343,0.78494864019923,1.61885211824983,1.09814811894422,2.12062324222236,1.81964233415984,0,1.26377536871694,0,3.41198885483798,2.11300293513511,0.682499557039929,0,1.13008116620243,4.96228809191512,0,1.31535265576129,0.578775534266688,2.62357900818653,0.811641507850816,0.6196469961995,0.563391205064483,1.00387946542836,0.0982490410131212,0.35667105148125,3.19284957663538,0.422215270595328,0,3.41525856389144,2.0996083214699,6.15821521443277,4.69211592875051,4.3556393944529,0.0941438007767792,1.29151611801369,0,0,1.60806380144872,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10222901961303,0,0,0,0,0,1.22864280839693,0,0,22.8182845296957,0,0,0,0,0,117.71125355998,0,0.311039587661807,1.43789361835723,0,0,0,0,4.44547960578548,0,0,0,0,0,0,3.41380344856499,0,4.72775363535873,0,0.291604613383254,0,0,0.844175070377856,0,0,0,0.438770794307945,0,0.557694977114413,0,0.113942055847001,0,0,0,0,0,3.73124343213044,0,0,0,0,0,0,0,0,0.210998064528027,0.489698424477443,0,0,0.995261931078505,0,0,0,0,0,0,4.012888236493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| ||
|short_description=p3@NEDD4 | |short_description=p3@NEDD4 | ||
}} | }} |
Latest revision as of 04:58, 18 September 2015
Short description: | p3@NEDD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NEDD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000338963, ENST00000508342, NM_198400, uc002adi.2, uc002adj.2, uc002adk.2, uc010bfm.2, uc010ugj.1_5end |
EntrezGene: | NEDD4 |
HGNC: | 7727 |
UniProt: | P46934 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.04e-16 | 76 |
skin fibroblast | 2.50e-12 | 23 |
embryonic cell | 2.27e-08 | 250 |
muscle precursor cell | 2.48e-07 | 58 |
myoblast | 2.48e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.48e-07 | 58 |
aortic smooth muscle cell | 2.53e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.74e-18 | 99 |
multilaminar epithelium | 7.40e-13 | 83 |
dense mesenchyme tissue | 3.76e-11 | 73 |
somite | 4.31e-11 | 71 |
presomitic mesoderm | 4.31e-11 | 71 |
presumptive segmental plate | 4.31e-11 | 71 |
dermomyotome | 4.31e-11 | 71 |
trunk paraxial mesoderm | 4.31e-11 | 71 |
paraxial mesoderm | 9.51e-11 | 72 |
presumptive paraxial mesoderm | 9.51e-11 | 72 |
mouth | 7.27e-10 | 29 |
stomodeum | 7.27e-10 | 29 |
skin of body | 4.66e-09 | 41 |
mouth mucosa | 6.24e-09 | 13 |
epithelial vesicle | 6.60e-09 | 78 |
skeletal muscle tissue | 1.35e-08 | 62 |
striated muscle tissue | 1.35e-08 | 62 |
myotome | 1.35e-08 | 62 |
gingiva | 1.53e-08 | 8 |
integument | 1.65e-08 | 46 |
integumental system | 1.65e-08 | 46 |
mucosa | 5.12e-08 | 20 |
muscle tissue | 5.43e-08 | 64 |
musculature | 5.43e-08 | 64 |
musculature of body | 5.43e-08 | 64 |
cranial skeletal system | 1.80e-07 | 11 |
blood vessel smooth muscle | 2.53e-07 | 10 |
arterial system smooth muscle | 2.53e-07 | 10 |
artery smooth muscle tissue | 2.53e-07 | 10 |
aorta smooth muscle tissue | 2.53e-07 | 10 |
axial skeletal system | 6.73e-07 | 14 |