FFCP PHASE1:Hg19::chr3:42623396..42623420,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9117 | |EntrezGene=9117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16828 | |HGNC=16828 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-3bp_to_ENST00000493107_5end | |association_with_transcript=-3bp_to_ENST00000493107_5end | ||
|cluster_id=chr3:42623396..42623420,- | |||
|description=CAGE_peak_2_at_SEC22C_5end | |description=CAGE_peak_2_at_SEC22C_5end | ||
|id=chr3:42623396..42623420,- | |id=chr3:42623396..42623420,- | ||
|ontology_enrichment_celltype=CL:0000066!1.96e-29!254;CL:0000223!6.32e-12!59;CL:0002321!3.02e-10!248;CL:0000220!4.63e-10!246;CL:0002076!5.05e-10!43;CL:0000076!3.51e-09!62 | |ontology_enrichment_celltype=CL:0000066!1.96e-29!254;CL:0000223!6.32e-12!59;CL:0002321!3.02e-10!248;CL:0000220!4.63e-10!246;CL:0002076!5.05e-10!43;CL:0000076!3.51e-09!62 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.73e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.81e-29,253;CL:0000223,1.04e-12,58;CL:0002076,9.50e-11,42;CL:0002321,2.09e-10,250;CL:0000076,1.70e-08,63;CL:0002251,7.96e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;5.21e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.16e-10!106;DOID:162!4.97e-07!235;DOID:14566!8.98e-07!239 | |ontology_enrichment_disease=DOID:305!2.16e-10!106;DOID:162!4.97e-07!235;DOID:14566!8.98e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.84e-10,106;DOID:162,9.48e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.21e-11!72;UBERON:0004119!2.31e-11!169;UBERON:0000925!2.31e-11!169;UBERON:0006595!2.31e-11!169;UBERON:0004921!1.67e-10!129;UBERON:0004185!1.67e-10!129;UBERON:0001007!3.09e-10!155;UBERON:0001555!3.09e-10!155;UBERON:0007026!3.09e-10!155;UBERON:0001041!5.16e-09!98;UBERON:0000077!1.41e-08!130;UBERON:0000065!1.99e-08!53;UBERON:0002530!2.82e-08!59;UBERON:0005911!7.82e-08!82;UBERON:0008947!1.42e-07!38;UBERON:0003258!1.42e-07!38;UBERON:0000072!5.78e-07!46;UBERON:0005153!6.52e-07!37 | |ontology_enrichment_uberon=UBERON:0001004!2.21e-11!72;UBERON:0004119!2.31e-11!169;UBERON:0000925!2.31e-11!169;UBERON:0006595!2.31e-11!169;UBERON:0004921!1.67e-10!129;UBERON:0004185!1.67e-10!129;UBERON:0001007!3.09e-10!155;UBERON:0001555!3.09e-10!155;UBERON:0007026!3.09e-10!155;UBERON:0001041!5.16e-09!98;UBERON:0000077!1.41e-08!130;UBERON:0000065!1.99e-08!53;UBERON:0002530!2.82e-08!59;UBERON:0005911!7.82e-08!82;UBERON:0008947!1.42e-07!38;UBERON:0003258!1.42e-07!38;UBERON:0000072!5.78e-07!46;UBERON:0005153!6.52e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0000065;8.27e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.44e-12,160;UBERON:0000925,3.44e-12,160;UBERON:0006595,3.44e-12,160;UBERON:0004921,9.97e-12,118;UBERON:0001004,3.27e-11,74;UBERON:0001007,4.16e-11,145;UBERON:0001555,4.16e-11,145;UBERON:0007026,4.16e-11,145;UBERON:0001041,2.14e-10,87;UBERON:0002530,1.72e-08,59;UBERON:0000065,2.90e-08,54;UBERON:0005911,5.56e-08,82;UBERON:0008947,1.51e-07,38;UBERON:0003258,1.51e-07,38;UBERON:0005153,6.96e-07,37;UBERON:0000072,8.30e-07,47 | |||
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| ||
|short_description=p2@SEC22C | |short_description=p2@SEC22C | ||
}} | }} |
Latest revision as of 06:12, 18 September 2015
Short description: | p2@SEC22C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEC22C_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000493107_5end |
EntrezGene: | SEC22C |
HGNC: | 16828 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.81e-29 | 253 |
endodermal cell | 1.04e-12 | 58 |
endo-epithelial cell | 9.50e-11 | 42 |
embryonic cell | 2.09e-10 | 250 |
squamous epithelial cell | 1.70e-08 | 63 |
epithelial cell of alimentary canal | 7.96e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.44e-12 | 160 |
endoderm | 3.44e-12 | 160 |
presumptive endoderm | 3.44e-12 | 160 |
subdivision of digestive tract | 9.97e-12 | 118 |
respiratory system | 3.27e-11 | 74 |
digestive system | 4.16e-11 | 145 |
digestive tract | 4.16e-11 | 145 |
primitive gut | 4.16e-11 | 145 |
foregut | 2.14e-10 | 87 |
gland | 1.72e-08 | 59 |
respiratory tract | 2.90e-08 | 54 |
endo-epithelium | 5.56e-08 | 82 |
respiratory primordium | 1.51e-07 | 38 |
endoderm of foregut | 1.51e-07 | 38 |
epithelial bud | 6.96e-07 | 37 |
segment of respiratory tract | 8.30e-07 | 47 |