FFCP PHASE1:Hg19::chr2:176969228..176969260,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3237 | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |HGNC=5134 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010fqx.2_5end | |association_with_transcript=0bp_to_uc010fqx.2_5end | ||
|cluster_id=chr2:176969228..176969260,+ | |||
|description=CAGE_peak_1_at_HOXD11_5end | |description=CAGE_peak_1_at_HOXD11_5end | ||
|id=chr2:176969228..176969260,+ | |id=chr2:176969228..176969260,+ | ||
|ontology_enrichment_celltype=CL:1000497!2.21e-09!18;CL:0002518!2.21e-09!18;CL:1000507!3.15e-08!12;CL:1000494!3.15e-08!12;CL:0002620!5.77e-08!23;CL:1000449!6.42e-08!16 | |ontology_enrichment_celltype=CL:1000497!2.21e-09!18;CL:0002518!2.21e-09!18;CL:1000507!3.15e-08!12;CL:1000494!3.15e-08!12;CL:0002620!5.77e-08!23;CL:1000449!6.42e-08!16 | ||
|ontology_enrichment_celltype_v019=CL:1000507;7.03e-11;10!CL:1000494;7.03e-11;10!CL:1000497;6.54e-10;17!CL:0002518;6.54e-10;17!CL:1000449;1.74e-09;15!CL:0002620;3.91e-07;23!CL:0002681;5.44e-07;12!CL:0002584;5.44e-07;12!CL:0000244;7.80e-07;4!CL:0000731;7.80e-07;4 | |ontology_enrichment_celltype_v019=CL:1000507;7.03e-11;10!CL:1000494;7.03e-11;10!CL:1000497;6.54e-10;17!CL:0002518;6.54e-10;17!CL:1000449;1.74e-09;15!CL:0002620;3.91e-07;23!CL:0002681;5.44e-07;12!CL:0002584;5.44e-07;12!CL:0000244;7.80e-07;4!CL:0000731;7.80e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.57e-11,10;CL:1000494,7.57e-11,10;CL:1000497,7.10e-10,17;CL:0002518,7.10e-10,17;CL:1000449,1.89e-09,15;CL:0002620,4.09e-07,23;CL:0002681,5.85e-07,12;CL:0002584,5.85e-07,12;CL:0000244,8.10e-07,4;CL:0000731,8.10e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!6.69e-11!143;DOID:1749!1.49e-10!14;DOID:14566!4.20e-09!239;DOID:162!2.27e-08!235 | |ontology_enrichment_disease=DOID:0050687!6.69e-11!143;DOID:1749!1.49e-10!14;DOID:14566!4.20e-09!239;DOID:162!2.27e-08!235 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.63e-10;14 | |ontology_enrichment_disease_v019=DOID:1749;2.63e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,2.64e-10,14;DOID:0050687,1.09e-09,143;DOID:14566,1.06e-07,239;DOID:162,3.29e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001008!7.29e-18!45;UBERON:0006554!2.79e-17!44;UBERON:0000489!3.84e-13!32;UBERON:0003064!8.33e-13!37;UBERON:0002113!2.87e-11!27;UBERON:0003918!2.87e-11!27;UBERON:0005095!2.87e-11!27;UBERON:0007687!2.87e-11!27;UBERON:0004876!1.80e-10!20;UBERON:0005156!4.58e-10!59;UBERON:0000990!4.58e-10!59;UBERON:0003886!6.79e-10!63;UBERON:0000080!4.20e-09!18;UBERON:0002120!4.20e-09!18;UBERON:0004875!4.20e-09!18;UBERON:0005721!4.20e-09!18;UBERON:0005754!4.20e-09!18;UBERON:0007297!4.20e-09!18;UBERON:0003133!1.56e-08!48;UBERON:0006555!1.99e-08!17;UBERON:0005103!1.99e-08!17;UBERON:0000083!1.99e-08!17;UBERON:0009201!1.99e-08!17;UBERON:0004819!1.99e-08!17;UBERON:0006553!1.99e-08!17;UBERON:0003074!1.99e-08!17;UBERON:0003060!1.99e-08!17;UBERON:0009773!3.15e-08!12;UBERON:0001231!3.15e-08!12;UBERON:0004810!3.15e-08!12;UBERON:0002553!6.23e-08!70;UBERON:0004211!6.42e-08!16;UBERON:0001285!6.42e-08!16;UBERON:0007684!6.42e-08!16;UBERON:0003220!6.42e-08!16;UBERON:0004208!6.42e-08!16;UBERON:0005910!8.21e-08!6;UBERON:0000059!1.07e-07!11;UBERON:0000478!2.56e-07!24;UBERON:0002331!3.21e-07!10;UBERON:0000358!3.21e-07!10;UBERON:0000307!3.21e-07!10;UBERON:0000091!3.21e-07!10;UBERON:0000087!3.21e-07!10;UBERON:0007806!3.21e-07!10;UBERON:0008780!3.21e-07!10;UBERON:0005728!3.21e-07!10;UBERON:0003887!3.32e-07!21;UBERON:0000365!7.78e-07!5;UBERON:0004175!8.94e-07!25 | |ontology_enrichment_uberon=UBERON:0001008!7.29e-18!45;UBERON:0006554!2.79e-17!44;UBERON:0000489!3.84e-13!32;UBERON:0003064!8.33e-13!37;UBERON:0002113!2.87e-11!27;UBERON:0003918!2.87e-11!27;UBERON:0005095!2.87e-11!27;UBERON:0007687!2.87e-11!27;UBERON:0004876!1.80e-10!20;UBERON:0005156!4.58e-10!59;UBERON:0000990!4.58e-10!59;UBERON:0003886!6.79e-10!63;UBERON:0000080!4.20e-09!18;UBERON:0002120!4.20e-09!18;UBERON:0004875!4.20e-09!18;UBERON:0005721!4.20e-09!18;UBERON:0005754!4.20e-09!18;UBERON:0007297!4.20e-09!18;UBERON:0003133!1.56e-08!48;UBERON:0006555!1.99e-08!17;UBERON:0005103!1.99e-08!17;UBERON:0000083!1.99e-08!17;UBERON:0009201!1.99e-08!17;UBERON:0004819!1.99e-08!17;UBERON:0006553!1.99e-08!17;UBERON:0003074!1.99e-08!17;UBERON:0003060!1.99e-08!17;UBERON:0009773!3.15e-08!12;UBERON:0001231!3.15e-08!12;UBERON:0004810!3.15e-08!12;UBERON:0002553!6.23e-08!70;UBERON:0004211!6.42e-08!16;UBERON:0001285!6.42e-08!16;UBERON:0007684!6.42e-08!16;UBERON:0003220!6.42e-08!16;UBERON:0004208!6.42e-08!16;UBERON:0005910!8.21e-08!6;UBERON:0000059!1.07e-07!11;UBERON:0000478!2.56e-07!24;UBERON:0002331!3.21e-07!10;UBERON:0000358!3.21e-07!10;UBERON:0000307!3.21e-07!10;UBERON:0000091!3.21e-07!10;UBERON:0000087!3.21e-07!10;UBERON:0007806!3.21e-07!10;UBERON:0008780!3.21e-07!10;UBERON:0005728!3.21e-07!10;UBERON:0003887!3.32e-07!21;UBERON:0000365!7.78e-07!5;UBERON:0004175!8.94e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.12e-17;30!UBERON:0001008;1.12e-17;30!UBERON:0000489;1.64e-12;29!UBERON:0002113;3.28e-11;24!UBERON:0011143;3.28e-11;24!UBERON:0004211;7.03e-11;10!UBERON:0009773;7.03e-11;10!UBERON:0001231;7.03e-11;10!UBERON:0004810;7.03e-11;10!UBERON:0005910;1.68e-09;6!UBERON:0006555;1.74e-09;15!UBERON:0004819;1.74e-09;15!UBERON:0001285;1.74e-09;15!UBERON:0007684;1.74e-09;15!UBERON:0002331;4.98e-09;10!UBERON:0000478;1.07e-08;24!UBERON:0000365;2.82e-08;5!UBERON:0004175;7.14e-08;21!UBERON:0000059;7.27e-08;11!UBERON:0003975;4.94e-07;18!UBERON:0001225;5.44e-07;12!UBERON:0008987;5.44e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0006554;1.12e-17;30!UBERON:0001008;1.12e-17;30!UBERON:0000489;1.64e-12;29!UBERON:0002113;3.28e-11;24!UBERON:0011143;3.28e-11;24!UBERON:0004211;7.03e-11;10!UBERON:0009773;7.03e-11;10!UBERON:0001231;7.03e-11;10!UBERON:0004810;7.03e-11;10!UBERON:0005910;1.68e-09;6!UBERON:0006555;1.74e-09;15!UBERON:0004819;1.74e-09;15!UBERON:0001285;1.74e-09;15!UBERON:0007684;1.74e-09;15!UBERON:0002331;4.98e-09;10!UBERON:0000478;1.07e-08;24!UBERON:0000365;2.82e-08;5!UBERON:0004175;7.14e-08;21!UBERON:0000059;7.27e-08;11!UBERON:0003975;4.94e-07;18!UBERON:0001225;5.44e-07;12!UBERON:0008987;5.44e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,4.86e-19,48;UBERON:0006554,2.47e-18,47;UBERON:0000489,5.40e-14,31;UBERON:0002113,1.14e-12,26;UBERON:0003918,1.14e-12,26;UBERON:0011143,1.14e-12,26;UBERON:0005095,1.14e-12,26;UBERON:0007687,1.14e-12,26;UBERON:0004810,7.57e-11,10;UBERON:0006555,4.28e-10,16;UBERON:0004819,4.28e-10,16;UBERON:0005910,1.69e-09,6;UBERON:0004211,1.89e-09,15;UBERON:0009773,1.89e-09,15;UBERON:0001231,1.89e-09,15;UBERON:0001285,1.89e-09,15;UBERON:0007684,1.89e-09,15;UBERON:0004208,1.89e-09,15;UBERON:0003064,3.63e-09,28;UBERON:0002331,5.04e-09,10;UBERON:0000358,5.04e-09,10;UBERON:0000307,5.04e-09,10;UBERON:0000091,5.04e-09,10;UBERON:0000087,5.04e-09,10;UBERON:0007010,5.04e-09,10;UBERON:0007806,5.04e-09,10;UBERON:0008780,5.04e-09,10;UBERON:0005728,5.04e-09,10;UBERON:0005156,1.03e-08,59;UBERON:0000990,1.03e-08,59;UBERON:0000478,1.16e-08,24;UBERON:0000365,2.91e-08,5;UBERON:0003104,5.55e-08,160;UBERON:0009142,5.55e-08,160;UBERON:0000059,7.06e-08,11;UBERON:0003133,2.94e-07,48;UBERON:0005172,3.80e-07,54;UBERON:0005173,3.80e-07,54;UBERON:0004175,4.46e-07,25;UBERON:0001225,5.85e-07,12;UBERON:0008987,5.85e-07,12 | |||
|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,1.44076983047484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06729878806013,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469737994575059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.68704032719855,8.32873816392413,16.7426201916054,8.40255069036326,6.90451945897541,1.28820270022815,0.930584281657949,0,0.389748020644795,8.07788077581166,8.28449087780694,0,24.1406522911298,23.3744867888125,9.49539316938731,0,0.272746120590835,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0.482022059766964,0.220587945464788,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.07577064061555,0,0,37.7632125550516,48.8834953483421,0,0,0,0,28.216323480355,27.1669311137654,0,0,26.1344118068032,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,1.20378439891088,0,0,0,2.76553752812555,1.47702144595741,0,0,0,0,0,0.303127571446259,0,0,0,1.38115775959256,1.40330047216537,0,1.53512174720011,0,0,0,0,0.0821271560138091,0,0,0,25.6648281988205,14.7329582297434,0.68888668898764,0,3.01586154406675,3.15839729035188,2.23344477602803,6.27479815341484,4.38417673959782,4.74982330017941,0,0.340187410553031,4.31831832204279,4.62681758070868,23.8432865038591,19.0642114064844,2.03901018436031,3.3243040357149,9.85048920777585,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,1.25671933779759,0,0,0.137836572484531,0,0,0,0.712256285173899,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,9.17349533674905,10.4324071299701,7.42218134777825,0,0,0,0,0,0,12.0119922039027,0,0,0,0,0,0,0,3.44947640836597,11.153645931591,11.8312153063541,12.9070216983646,17.3900802593224,3.92338156629375,8.51426553769435,0,0.329294892959902,0,0,0,0,0,0.470719003883896,28.8438599689724,10.1082885400575,37.6915630506174,39.2827014353901,0,0,0,0,0,0,0,0,0,0,20.5833781424067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,11.3518237577392,0.984678443688556,0,0,0,0,5.81996093257908,0,0,0,0,0,0,0,0,0.1137934482855,0,0,1.37897349296586,0.583209226766509,0,0,0,0,0,0,0,0,42.6636657492526,13.0815439456455,0,0,0,0.108647371922008,2.23300811812344,15.296798098111,1.06606955203727,0,0,0,0,0,0,0,0,3.79796516150449,0,0,8.22276831019946,3.98104772431402,1.50377859655677,6.72133159426988,33.8034086695909,30.2731650418932,34.0415555387785,0,0,0,0,11.9355417548575,0,0,0,0,0,10.3723159396,19.1823154084907,10.634461963315,4.96487933813248,15.6966459203613,8.36307008410712,1.13843818411917,0,0,57.3255524874109,22.8095121240655,1.04836000945218,0,0,0,0,0,0,0,3.83717389010903,0.19871461170299,0,17.0129702979279,4.00794101257669,0,13.786863061167,0,0.114536596165916,15.6151448054388,0,14.4132941255902,55.1524041003301,44.4406753860718,43.4101812196183,7.24187345217885,30.050861349758,0,0,0,0,38.3815537247799,0,0,0,5.39133301347276,0,0,0,0,0,0,0,0,20.6697711180972,0,0,0,0,0,0,0,0,0,3.68978156359193,1.81253126788156,4.66845834401483,0,0,35.5043115040974,0,0,0,22.2629836719022,19.0128728064279,0.326587360109409,0,0,55.5464951020475,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,36.3854516929004,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,22.4964734331792,0,0,0,0,8.98510377387116,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,1.24210365501008,0,0,13.0436265452933,0,4.95046775819434,0,0,0.537052785212442,0,18.3124108801363,0,0.343395705182793,0,0,3.65977677773876,0,0,0,4.39892701215285,0,0,0.308801447160972,0,0,0,0,0,0,0.303859956177382,0,0,0,0,3.27609848846413,0,0,0,0,0,33.4834412604433,11.598674865866,0,0,0,36.4447862520785,11.0086159299127,0,23.5928216636095,12.3293453658976,10.9063472547922,7.26238393365217,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,36.2167050677563,29.3485757634686,80.2903379744851,0,0,0,0.300841313397029,1.0085253435176,0,0,0.49131575253029,0,0,0,0,0,0,0,11.9090682813431,0.703484977438482,41.3950265552289,0,0,0,0,2.7497734750418,0,10.1177925568077,0,0,0,0,5.49451649953598,0,3.08299379645168,21.9158092922279,0.647782773655864,46.3419137250439,0,0,0,17.2119689579554,0,0,0,0,0,0,0,5.50403165248208,1.14553434272025,0,0,0,0,0,1.29485767437579,0.410651227424988,0,0,27.8387961519906,0,0,0,0.549702583727146,0,0,0,8.46571133450741,9.56078454840231,0,0.196308467114945,0,1.6906229103336,4.41810498188324,0,0,0,58.0300300468387,53.6400205007851,0,0,0,0,1.73548718412503,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0.380095503034311,0,2.93939145792117,7.71917156092697,0,0.303114792872958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.8412800660409,19.3176496038665,77.228912914776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| ||
|short_description=p1@HOXD11 | |short_description=p1@HOXD11 | ||
}} | }} |
Latest revision as of 08:41, 18 September 2015
Short description: | p1@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD11_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010fqx.2_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.57e-11 | 10 |
nephron tubule epithelial cell | 7.57e-11 | 10 |
kidney cell | 7.10e-10 | 17 |
kidney epithelial cell | 7.10e-10 | 17 |
epithelial cell of nephron | 1.89e-09 | 15 |
skin fibroblast | 4.09e-07 | 23 |
kidney cortical cell | 5.85e-07 | 12 |
renal cortical epithelial cell | 5.85e-07 | 12 |
transitional epithelial cell | 8.10e-07 | 4 |
urothelial cell | 8.10e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.64e-10 | 14 |
cell type cancer | 1.09e-09 | 143 |
disease of cellular proliferation | 1.06e-07 | 239 |
cancer | 3.29e-07 | 235 |