FFCP PHASE1:Hg19::chr1:171939240..171939292,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26052 | |EntrezGene=26052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29125 | |HGNC=29125 | ||
|TSSclassifier=strong | |||
|UniProt=E5RIK2 | |UniProt=E5RIK2 | ||
|association_with_transcript=0bp_to_ENST00000523513_5end | |association_with_transcript=0bp_to_ENST00000523513_5end | ||
|cluster_id=chr1:171939240..171939292,+ | |||
|coexpression_cluster_id=C17 | |coexpression_cluster_id=C17 | ||
|description=CAGE_peak_3_at_DNM3_5end | |description=CAGE_peak_3_at_DNM3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000037!6.22e-21!172;CL:0000566!6.22e-21!172;CL:0000988!4.89e-19!182;CL:0000763!9.68e-19!112;CL:0000049!9.68e-19!112;CL:0002032!9.44e-18!165;CL:0000837!9.44e-18!165;CL:0002274!5.33e-13!5;CL:0000457!5.33e-13!5;CL:0002191!5.33e-13!5;CL:0000097!5.33e-13!5;CL:0000831!5.33e-13!5;CL:0002028!5.33e-13!5;CL:0000738!2.93e-10!140;CL:0000766!2.08e-09!76;CL:0000775!3.66e-08!3;CL:0000842!6.57e-08!3;CL:0000839!1.75e-07!70;CL:0002031!1.95e-07!124;CL:0000094!2.29e-07!8;CL:0000236!2.64e-07!14;CL:0000163!5.69e-07!9 | |ontology_enrichment_celltype=CL:0000037!6.22e-21!172;CL:0000566!6.22e-21!172;CL:0000988!4.89e-19!182;CL:0000763!9.68e-19!112;CL:0000049!9.68e-19!112;CL:0002032!9.44e-18!165;CL:0000837!9.44e-18!165;CL:0002274!5.33e-13!5;CL:0000457!5.33e-13!5;CL:0002191!5.33e-13!5;CL:0000097!5.33e-13!5;CL:0000831!5.33e-13!5;CL:0002028!5.33e-13!5;CL:0000738!2.93e-10!140;CL:0000766!2.08e-09!76;CL:0000775!3.66e-08!3;CL:0000842!6.57e-08!3;CL:0000839!1.75e-07!70;CL:0002031!1.95e-07!124;CL:0000094!2.29e-07!8;CL:0000236!2.64e-07!14;CL:0000163!5.69e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000097;1.90e-25;5!CL:0000226;7.66e-15;3!CL:0000842;7.66e-15;3!CL:0000163;4.87e-14;9!CL:0000764;2.42e-10;2!CL:0000558;2.42e-10;2!CL:0000236;5.41e-09;13!CL:0000775;8.73e-08;3 | |ontology_enrichment_celltype_v019=CL:0000097;1.90e-25;5!CL:0000226;7.66e-15;3!CL:0000842;7.66e-15;3!CL:0000163;4.87e-14;9!CL:0000764;2.42e-10;2!CL:0000558;2.42e-10;2!CL:0000236;5.41e-09;13!CL:0000775;8.73e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.90e-25,5;CL:0002028,1.90e-25,5;CL:0000226,8.24e-15,3;CL:0000842,8.24e-15,3;CL:0000163,4.87e-14,9;CL:0000037,2.04e-12,168;CL:0000988,1.64e-11,177;CL:0000764,1.90e-10,2;CL:0000765,1.90e-10,2;CL:0000050,1.90e-10,2;CL:0000038,1.90e-10,2;CL:0000558,1.90e-10,2;CL:0000547,1.90e-10,2;CL:0000549,1.90e-10,2;CL:0000550,1.90e-10,2;CL:0000552,1.90e-10,2;CL:0002032,1.30e-08,161;CL:0000837,1.30e-08,161;CL:0000236,2.77e-08,14;CL:0000763,4.05e-08,108;CL:0000049,4.05e-08,108;CL:0000775,8.45e-08,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:8692!1.20e-09!31;DOID:1240!4.73e-07!39 | |ontology_enrichment_disease=DOID:8692!1.20e-09!31;DOID:1240!4.73e-07!39 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.88e-22!15;UBERON:0000179!1.88e-22!15;UBERON:0000463!1.88e-22!15;UBERON:0002390!6.15e-17!102;UBERON:0003061!6.15e-17!102;UBERON:0002193!1.32e-14!112;UBERON:0007023!1.73e-08!115 | |ontology_enrichment_uberon=UBERON:0000178!1.88e-22!15;UBERON:0000179!1.88e-22!15;UBERON:0000463!1.88e-22!15;UBERON:0002390!6.15e-17!102;UBERON:0003061!6.15e-17!102;UBERON:0002193!1.32e-14!112;UBERON:0007023!1.73e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.16e-46;15!UBERON:0000179;1.16e-46;15!UBERON:0000463;1.16e-46;15!UBERON:0002390;3.22e-30;32!UBERON:0002193;5.28e-16;42!UBERON:0002106;3.56e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.16e-46;15!UBERON:0000179;1.16e-46;15!UBERON:0000463;1.16e-46;15!UBERON:0002390;3.22e-30;32!UBERON:0002193;5.28e-16;42!UBERON:0002106;3.56e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.26e-46,15;UBERON:0000179,1.26e-46,15;UBERON:0000463,1.26e-46,15;UBERON:0002390,1.01e-15,98;UBERON:0003061,1.01e-15,98;UBERON:0002193,7.28e-14,108;UBERON:0002106,4.05e-07,3;UBERON:0004854,4.05e-07,3;UBERON:0009034,4.05e-07,3;UBERON:0002095,4.05e-07,3;UBERON:0004782,4.05e-07,3;UBERON:0003281,4.05e-07,3;UBERON:0009664,4.05e-07,3;UBERON:0002296,4.05e-07,3;UBERON:0005602,4.05e-07,3;UBERON:0001179,4.05e-07,3;UBERON:0006293,4.05e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.91914699048606,0,0,0,0,0,0,1.76160263600908,0,0.200544447470142,0,0.223915474239924,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0.545812300115692,0,0.306083892370903,0,0,0,0,0.426224750532694,0,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0.211255286311942,0,0,0,0,0,0,0,0,1.75996244461323,2.73069305631066,0,1.28019066769952,0.400395987036012,1.14950487990897,0.661044872784862,3.81621501814146,0,0,0,7.93027971474155,3.92355994087075,2.63384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,171.446806787788,7.21997158908454,3.93923419527467,5.04419836959365,14.6441222774601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,8.97484377612075,11.189218862773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,1.50999940573032,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53481913652154,1.8300481571743,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,37.0436754739484,26.7623022499831,33.0395368561014,21.9173233421166,11.1067813733272,35.0175588044067,34.5620119832393,34.1043825806536,0,0,0,0,0,0,0,0.399158742865633,1.91505370132367,0.211673582723883,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0.976940477010201,8.90899756464776,0,6.76139196189958,23.6481097278452,1.4098700508785,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,9.57932369387759,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.627921025580099,0.664846727600626,0,0,0,0,2.86085842164682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,5.50215067848831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,1.12780701575824,1.61144719933943,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0.852935927603924,0,0,0.248298857183432,0,0.0636471582781649,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.91914699048606,0,0,0,0,0,0,1.76160263600908,0,0.200544447470142,0,0.223915474239924,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0.545812300115692,0,0.306083892370903,0,0,0,0,0.426224750532694,0,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0.211255286311942,0,0,0,0,0,0,0,0,1.75996244461323,2.73069305631066,0,1.28019066769952,0.400395987036012,1.14950487990897,0.661044872784862,3.81621501814146,0,0,0,7.93027971474155,3.92355994087075,2.63384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,171.446806787788,7.21997158908454,3.93923419527467,5.04419836959365,14.6441222774601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,8.97484377612075,11.189218862773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,1.50999940573032,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53481913652154,1.8300481571743,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,37.0436754739484,26.7623022499831,33.0395368561014,21.9173233421166,11.1067813733272,35.0175588044067,34.5620119832393,34.1043825806536,0,0,0,0,0,0,0,0.399158742865633,1.91505370132367,0.211673582723883,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0.976940477010201,8.90899756464776,0,6.76139196189958,23.6481097278452,1.4098700508785,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,9.57932369387759,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.627921025580099,0.664846727600626,0,0,0,0,2.86085842164682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,5.50215067848831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,1.12780701575824,1.61144719933943,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0.852935927603924,0,0,0.248298857183432,0,0.0636471582781649,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@DNM3 | |short_description=p3@DNM3 | ||
}} | }} |
Latest revision as of 16:00, 18 September 2015
Short description: | p3@DNM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DNM3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000523513_5end |
EntrezGene: | DNM3 |
HGNC: | 29125 |
UniProt: | E5RIK2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.90e-25 | 5 |
basophil mast progenitor cell | 1.90e-25 | 5 |
single nucleate cell | 8.24e-15 | 3 |
mononuclear cell | 8.24e-15 | 3 |
endocrine cell | 4.87e-14 | 9 |
hematopoietic stem cell | 2.04e-12 | 168 |
hematopoietic cell | 1.64e-11 | 177 |
erythroid lineage cell | 1.90e-10 | 2 |
erythroblast | 1.90e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 1.90e-10 | 2 |
erythroid progenitor cell | 1.90e-10 | 2 |
reticulocyte | 1.90e-10 | 2 |
proerythroblast | 1.90e-10 | 2 |
basophilic erythroblast | 1.90e-10 | 2 |
polychromatophilic erythroblast | 1.90e-10 | 2 |
orthochromatic erythroblast | 1.90e-10 | 2 |
hematopoietic oligopotent progenitor cell | 1.30e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.30e-08 | 161 |
B cell | 2.77e-08 | 14 |
myeloid cell | 4.05e-08 | 108 |
common myeloid progenitor | 4.05e-08 | 108 |
neutrophil | 8.45e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.26e-46 | 15 |
haemolymphatic fluid | 1.26e-46 | 15 |
organism substance | 1.26e-46 | 15 |
hematopoietic system | 1.01e-15 | 98 |
blood island | 1.01e-15 | 98 |
hemolymphoid system | 7.28e-14 | 108 |
spleen | 4.05e-07 | 3 |
gastrointestinal system mesentery | 4.05e-07 | 3 |
stomach region | 4.05e-07 | 3 |
mesentery | 4.05e-07 | 3 |
gastrointestinal system serosa | 4.05e-07 | 3 |
mesentery of stomach | 4.05e-07 | 3 |
gut mesentery | 4.05e-07 | 3 |
dorsal mesentery | 4.05e-07 | 3 |
dorsal mesogastrium | 4.05e-07 | 3 |
peritoneal cavity | 4.05e-07 | 3 |
spleen primordium | 4.05e-07 | 3 |