FFCP PHASE1:Hg19::chr10:65281244..65281259,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221035 | |EntrezGene=221035 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23711 | |HGNC=23711 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000298249_5end | |association_with_transcript=71bp_to_ENST00000298249_5end | ||
|cluster_id=chr10:65281244..65281259,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_REEP3_5end | |description=CAGE_peak_4_at_REEP3_5end | ||
|id=chr10:65281244..65281259,+ | |id=chr10:65281244..65281259,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.96e-24;2!CL:0002319;3.76e-07;25!CL:0002545;3.81e-07;2!CL:0002363;3.81e-07;2!CL:0002535;3.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.16e-13,8;CL:0002535,2.58e-07,2;CL:0002319,3.76e-07,25;CL:0002545,4.69e-07,2;CL:0002363,4.98e-07,2;CL:0000008,4.98e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.06e-13;1!CL:0000008;3.81e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.06e-13;1!UBERON:0001785;5.06e-13;1!UBERON:0002464;5.06e-13;1!UBERON:0004904;5.06e-13;1!UBERON:0001021;5.06e-13;1!UBERON:0003714;3.81e-07;2!UBERON:0005162;3.81e-07;2!UBERON:0000122;3.81e-07;2!UBERON:0005800;3.81e-07;2!UBERON:0003566;3.81e-07;2!UBERON:0006955;3.81e-07;2!UBERON:0001777;3.81e-07;2!UBERON:0004801;3.81e-07;2!UBERON:0001515;3.81e-07;2!UBERON:0000473;5.54e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,4.23e-13,1;UBERON:0001785,4.23e-13,1;UBERON:0002464,4.23e-13,1;UBERON:0004904,4.23e-13,1;UBERON:0001021,4.23e-13,1;UBERON:0003902,4.23e-13,1;UBERON:0005425,4.23e-13,1;UBERON:0006955,2.58e-07,2;UBERON:0004801,2.58e-07,2;UBERON:0003714,3.48e-07,2;UBERON:0005162,3.48e-07,2;UBERON:0000122,3.48e-07,2;UBERON:0005800,4.69e-07,2;UBERON:0001515,4.69e-07,2;UBERON:0003566,4.98e-07,2;UBERON:0001777,4.98e-07,2;UBERON:0000473,5.54e-07,8 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.286235987131057,0.136874425072884,0.376627918784408,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0.426224750532694,0,0,0.622822248995575,0,0.521482918420201,0,0,0,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0.434539556882471,0,0,0.756278537312543,0.665188192387692,0.43917392846563,4.25681995367566,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0.258416759169329,0,0.66944122552934,0,0,0,1.10298924103761,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0.633152558322899,0,0,0.354668382198357,0,0,0.24666754841716,0,0.269421344139376,0.326923806226917,0.454072282934794,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.647491777472526,0.140450806702248,0.204154171254893,0.245668634623536,0.103325781175765,0,0.741800787835671,0.910161361938026,0,1.0100166837244,0.250237039743928,0.277064115484183,0,0.30648779579902,0,0.340296549480063,0,0.213557388818567,0,0,0.412210116953756,0,0,0.168776332241266,0.194874010322397,0,0.276149695926898,0,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0.286804595389004,0.243947412259191,0.397589304964456,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0.721879481669586,0.354920400119532,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0.441463099414651,0.491953754172454,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0.325808305310325,1.03993478527958,0,0.695582429850461,0.117408694235822,0,0,0.190254152234598,0,0,0,0.468008530278475,0.148631162288728,0,0.16798212819886,0.425325291727159,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0.336393253036082,0,0.5867062865676,0.517086863031111,0,0,0.26593811658487,0,0.257207374262142,1.41849132023278,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0,0,1.74306691720059,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,1.01637849688985,1.30139853857622,1.54657762555539,0.502548796003046,0,0,0,0,0.36807447515742,0.500170521059677,0,0.415941723061614,0,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0.496215615637554,0.460385919864187,0.841980283299221,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0.725156697549733,0.40101294060657,0.184161977871793,0.114814448164607,0.182091168006717,0.393373244878272,0.451199612907412,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0,0,0,0.256450125116389,0,0.650756789328606,0.206082023295445,0.183138929636687,0.247528499761764,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.429680979473094,0.145016693914229,0.170453254832202,0.178064071293475,0.495854746082934,0,0.127612712494584,0.2023155617111,0,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0,0.286249773483982,0.744316738719335,0,0,0,0.42793898803392,0,0,0,0,0.471249609382746,0,0,0,0,0,0,0.409499734223957,0.141405431953713,0,0.551365343546124,0,0,0,0,0,0,0,0.430234056612155,0.0982490410131212,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.534120355637366,0.962479855263359,0.245040215981032,0.371606350251437,0.28853842595289,0.0711418433484141,0,0,0,0.211673582723883,0,0,0.228234679033192,0.156679895773023,0,0,0,0,0.425846237690326,0.687010689511529,0,0,0,0,0,0,0.270455678475983,0,0,0.18714054040822,0.146508179271894,0,0.111443384277478,0.284136146806413,0,0,0,0,0,0.222617410045812,0,0,0.796991953004279,0,1.76352923497993,1.63629892003448,0,0.622079175323615,0.269605053441981,0,0,0,0,0,0,0.278304294485554,0,0,0.0874599999961957,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0.438770794307945,0,0.139423744278603,0.0769502585037971,0.227884111694002,0,0.0897576444097721,0.325942115766024,0,0.274792780205587,0.533034776018635,0,0.156980256395025,0,0.225595660617181,0.19606253431774,0,0,0,0.210998064528027,0,0.424059214301822,0,0,0.0884575645033392,0.611030144933625,0,0,0.208843899010911,0.539209063845416,0,0.234264445725339,0.182454789215666,0,0.485560759068186,0.394584402849391,0,0,0.189559738885464,0.150323419414493,0.518440956986236,0,0,0,0,0.569219092059585,0,0.347119476670262,0.195984794828755,0.0870592065804026,0.17472666824203,0.859930162358083,0,0.146178634172371,0.0821154570532092,0,0.441280633457501,0,0.411125773940253,0.19871461170299,0.253243183823515,0.391102765469606,0.160317640503067,0,0.19980960958213,0,0,0.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| ||
|short_description=p4@REEP3 | |short_description=p4@REEP3 | ||
}} | }} |
Latest revision as of 20:52, 18 September 2015
Short description: | p4@REEP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_REEP3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 71bp_to_ENST00000298249_5end |
EntrezGene: | REEP3 |
HGNC: | 23711 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.16e-13 | 8 |
epithelial cell of cervix | 2.58e-07 | 2 |
neural cell | 3.76e-07 | 25 |
thoracic aorta endothelial cell | 4.69e-07 | 2 |
keratocyte | 4.98e-07 | 2 |
migratory cranial neural crest cell | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 4.23e-13 | 1 |
cranial nerve | 4.23e-13 | 1 |
nerve trunk | 4.23e-13 | 1 |
nerve connecting eye with brain | 4.23e-13 | 1 |
nerve | 4.23e-13 | 1 |
retinal neural layer | 4.23e-13 | 1 |
presumptive neural retina | 4.23e-13 | 1 |
uterine epithelium | 2.58e-07 | 2 |
cervix epithelium | 2.58e-07 | 2 |
neural tissue | 3.48e-07 | 2 |
multi cell component structure | 3.48e-07 | 2 |
neuron projection bundle | 3.48e-07 | 2 |
segment of aorta | 4.69e-07 | 2 |
thoracic aorta | 4.69e-07 | 2 |
head connective tissue | 4.98e-07 | 2 |
substantia propria of cornea | 4.98e-07 | 2 |
testis | 5.54e-07 | 8 |