FFCP PHASE1:Hg19::chr12:52636827..52636840,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3855 | |EntrezGene=3855 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6445 | |HGNC=6445 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_ENST00000549127_5end | |association_with_transcript=-28bp_to_ENST00000549127_5end | ||
|cluster_id=chr12:52636827..52636840,+ | |||
|coexpression_cluster_id=C689 | |coexpression_cluster_id=C689 | ||
|description=CAGE_peak_3_at_KRT7_5end | |description=CAGE_peak_3_at_KRT7_5end | ||
|id=chr12:52636827..52636840,+ | |id=chr12:52636827..52636840,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.47e-45!254;CL:0000063!4.98e-13!578;CL:0000077!2.71e-12!19;CL:0000076!1.61e-11!62;CL:0002076!2.12e-11!43;CL:0002368!1.28e-09!13;CL:0000213!3.18e-09!57;CL:0000215!3.18e-09!57;CL:0002321!5.69e-08!248;CL:0000220!5.82e-08!246;CL:0000548!9.68e-08!679;CL:0000004!9.68e-08!679;CL:0000255!9.68e-08!679;CL:0000012!1.92e-07!682;CL:0002202!7.88e-07!9;CL:0002632!7.88e-07!9 | |ontology_enrichment_celltype=CL:0000066!1.47e-45!254;CL:0000063!4.98e-13!578;CL:0000077!2.71e-12!19;CL:0000076!1.61e-11!62;CL:0002076!2.12e-11!43;CL:0002368!1.28e-09!13;CL:0000213!3.18e-09!57;CL:0000215!3.18e-09!57;CL:0002321!5.69e-08!248;CL:0000220!5.82e-08!246;CL:0000548!9.68e-08!679;CL:0000004!9.68e-08!679;CL:0000255!9.68e-08!679;CL:0000012!1.92e-07!682;CL:0002202!7.88e-07!9;CL:0002632!7.88e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.09e-13;13!CL:0000077;7.46e-13;19!CL:0002202;1.43e-09;9!CL:0002632;1.43e-09;9!CL:0002076;1.02e-08;42!CL:0000066;7.75e-07;253 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.64e-47,253;CL:0002368,1.64e-13,13;CL:0000077,8.61e-13,19;CL:0002076,1.56e-12,42;CL:0000076,3.47e-11,63;CL:0002202,1.78e-09,9;CL:0002632,1.78e-09,9;CL:0000223,7.30e-08,58;CL:0000213,7.71e-07,58;CL:0000215,7.71e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.22e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.35e-10!106 | |ontology_enrichment_disease=DOID:305!2.35e-10!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.10e-12,106;DOID:0050687,2.13e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0008947!4.18e-14!38;UBERON:0003258!4.18e-14!38;UBERON:0001048!2.21e-13!168;UBERON:0000065!2.45e-13!53;UBERON:0000464!7.69e-13!104;UBERON:0004119!3.65e-12!169;UBERON:0000925!3.65e-12!169;UBERON:0006595!3.65e-12!169;UBERON:0001004!3.91e-12!72;UBERON:0000077!6.02e-11!130;UBERON:0000466!2.24e-10!126;UBERON:0000072!3.56e-10!46;UBERON:0001737!1.39e-09!9;UBERON:0005153!1.56e-09!37;UBERON:0001041!8.59e-09!98;UBERON:0005631!2.33e-08!14;UBERON:0000158!2.33e-08!14;UBERON:0000063!6.79e-08!97;UBERON:0005178!7.19e-08!34;UBERON:0002224!7.19e-08!34;UBERON:0001007!9.07e-08!155;UBERON:0001555!9.07e-08!155;UBERON:0007026!9.07e-08!155;UBERON:0000915!1.80e-07!52;UBERON:0005181!1.93e-07!35;UBERON:0005911!2.03e-07!82;UBERON:0003124!2.99e-07!7;UBERON:0004921!3.32e-07!129;UBERON:0004185!3.32e-07!129;UBERON:0007625!5.30e-07!11 | |ontology_enrichment_uberon=UBERON:0008947!4.18e-14!38;UBERON:0003258!4.18e-14!38;UBERON:0001048!2.21e-13!168;UBERON:0000065!2.45e-13!53;UBERON:0000464!7.69e-13!104;UBERON:0004119!3.65e-12!169;UBERON:0000925!3.65e-12!169;UBERON:0006595!3.65e-12!169;UBERON:0001004!3.91e-12!72;UBERON:0000077!6.02e-11!130;UBERON:0000466!2.24e-10!126;UBERON:0000072!3.56e-10!46;UBERON:0001737!1.39e-09!9;UBERON:0005153!1.56e-09!37;UBERON:0001041!8.59e-09!98;UBERON:0005631!2.33e-08!14;UBERON:0000158!2.33e-08!14;UBERON:0000063!6.79e-08!97;UBERON:0005178!7.19e-08!34;UBERON:0002224!7.19e-08!34;UBERON:0001007!9.07e-08!155;UBERON:0001555!9.07e-08!155;UBERON:0007026!9.07e-08!155;UBERON:0000915!1.80e-07!52;UBERON:0005181!1.93e-07!35;UBERON:0005911!2.03e-07!82;UBERON:0003124!2.99e-07!7;UBERON:0004921!3.32e-07!129;UBERON:0004185!3.32e-07!129;UBERON:0007625!5.30e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.71e-13;9!UBERON:0001557;3.71e-13;9!UBERON:0000072;1.94e-11;37!UBERON:0000065;2.45e-11;44!UBERON:0007625;3.18e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.54e-13,9;UBERON:0008947,1.12e-12,38;UBERON:0003258,1.12e-12,38;UBERON:0001048,2.57e-12,160;UBERON:0000065,7.51e-12,54;UBERON:0004119,3.73e-11,160;UBERON:0000925,3.73e-11,160;UBERON:0006595,3.73e-11,160;UBERON:0001004,6.80e-11,74;UBERON:0005631,2.12e-10,14;UBERON:0000158,2.12e-10,14;UBERON:0000072,3.89e-10,47;UBERON:0003124,8.29e-10,7;UBERON:0001041,3.64e-08,87;UBERON:0005153,2.58e-07,37;UBERON:0007625,2.67e-07,11;UBERON:0005085,6.19e-07,31;UBERON:0001007,7.68e-07,145;UBERON:0001555,7.68e-07,145;UBERON:0007026,7.68e-07,145 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0,2.00146596706261,0,3.48935409640147,0,0,0,15.2355040630935,129.093216074899,7.42700665242586,8.70431028153897,0,0,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,19.3078457140575,5.72291245678675,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,2.462390822334,0,0,0.283604451492204,5.5432349365641,3.42555664203192,0.261958150995425,0,1.48313777113772,0,0,0,0,0,0,0.596287222100115,0,1.73570250803797,0,5.87299210693868,17.6075546841643,3.55291443112578,0.258416759169329,0,0,2.01414658554573,1.52054421143703,0.488124115096339,1.47065232138347,21.8738325928075,0,0,0,0,0,0.549605231791222,0,0,4.36094052142534,1.98788780678127,0.12663051166458,0,0,0.709336764396714,5.04609840128076,4.2699598291882,3.45334567784024,0,0.404132016209064,0.490385709340376,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.794025282120147,1.07633781413317,0.213557388818567,0,0.300091096084402,0.103052529238439,1.54584324027377,0.18611685633159,1.0126579934476,1.85130309806277,0.504867548488229,0,0,0,0.10075209822764,0,5.21804303540901,0,2.00763216772303,0,0.132529768321485,0.232387885739037,0.10366105501537,0.504641701751257,0,0,1.92972281457866,0,0,0,10.4109984035063,10.7894201649985,7.95336398615491,10.8088093277746,9.15093665188106,9.96536600266606,8.89886633857085,8.63374446551523,6.15595451114225,0,0,0.8231480226628,0,0,0,0,0,0,3.43135620597051,3.73150970389327,0,0,0.462942225792648,0,0,11.5465073620219,0.115930404975077,2.93521735589554,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,1.51183915378974,0.425325291727159,2.50763863567975,7.84711633987697,5.75074018747817,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,8.44030255766841,0.871533458600294,15.5957866244009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.99130067673937,1.60586089917446,1.89242898040722,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,7.27506171471023,3.32870879020994,4.23346410661552,1.48864684691266,2.30192959932094,2.24528075546459,0.512556597022804,1.02341449813341,1.12597744800525,1.48418066444991,0,0,0,0,0,0,31.680022307919,4.14364450211533,0.574072240823034,0,0.131124414959424,3.60959690325929,2.46449078734127,0,4.38417673959782,1.16106791782163,0,0.680374821106063,0.431831832204279,0,0,0,2.03901018436031,7.47968408035852,0.895499018888713,0,0,3.84675187674584,16.0727176392856,10.737487023922,0.206082023295445,0,0,1.72279661398852,2.60024098414608,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0,4.13212288402445,12.4923543787319,2.29702882490251,2.023155617111,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0,0,1.54911749049875,0,0.143411352204052,0.0982490410131212,0,0,0.422215270595328,0.329294892959902,0,0,1.05844323998063,9.38423185750102,14.1558280319719,0.564862804660675,4.73555909938353,11.7930032967338,2.21715076768338,0.459446800413919,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,3.58116727106535,0.593929361665277,2.15012491469462,0,0,0,0,0.844501632511974,0,0,0,0,0,0,11.5031489468578,5.19161406559267,0,0.295930216910801,0,0,0,0,0,0,1.13697999995054,0,0,3.30529745380596,3.07303986298317,0,0,0,0,0,0,0,0,0,2.06983080686081,0,0,0,0,1.97466817701499,0.434589487688032,16.9070614657917,6.96141709854154,35.7133299932485,0,0,0,0,0,0,0,0,0,3.26465616318295,0,0,0,0,0,0,0,0,0,0,0,0,1.17398771359254,0,0,0,0,0,0,0,0,1.323967823502,0,0,0.569219092059585,0,4.33899345837827,0,2.96001302373369,0,0,3.77349692027432,2.33885814675794,4.51635013792651,0.193978032976839,0,0.451961481561065,0,0,0,3.12882212375685,1.52301758477914,0.213452994739353,15.5851495474062,0.432271251462318,0,0,0.720273989940749,0,4.00679858848552,0,0,0,0,0,0,0,2.57859264851974,0,0,0,0,1.39775300349294,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0.236417121897595,0.0524545881349981,0.211200673038813,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39521573038061,2.11444506695002,0.854299300541557,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0.147855149989634,0.63718706865481,0,0.776314784381297,0,0.797525143673985,0.521745061811734,0.601030435988874,3.42724690951916,2.44122439922797,0,3.65195893944461,0,1.59238355479446,0,0,0.673498977531838,0,0,5.14659819299822,6.7858515910955,36.2729480819636,7.87176412701035,9.29999477124577,15.9389068562524,9.88164630915111,15.3498834705095,0.883445729729405,32.7953865060555,5.40615810089832,0,0.690860683462397,2.12701969324168,0,0,0,0,0,5.16123108382811,2.3244333569449,0,0,0,0,0,1.678554092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| ||
|short_description=p3@KRT7 | |short_description=p3@KRT7 | ||
}} | }} |
Latest revision as of 22:07, 18 September 2015
Short description: | p3@KRT7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KRT7_5end |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | -28bp_to_ENST00000549127_5end |
EntrezGene: | KRT7 |
HGNC: | 6445 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.64e-47 | 253 |
respiratory epithelial cell | 1.64e-13 | 13 |
mesothelial cell | 8.61e-13 | 19 |
endo-epithelial cell | 1.56e-12 | 42 |
squamous epithelial cell | 3.47e-11 | 63 |
epithelial cell of tracheobronchial tree | 1.78e-09 | 9 |
epithelial cell of lower respiratory tract | 1.78e-09 | 9 |
endodermal cell | 7.30e-08 | 58 |
lining cell | 7.71e-07 | 58 |
barrier cell | 7.71e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.54e-13 | 9 |
respiratory primordium | 1.12e-12 | 38 |
endoderm of foregut | 1.12e-12 | 38 |
primordium | 2.57e-12 | 160 |
respiratory tract | 7.51e-12 | 54 |
endoderm-derived structure | 3.73e-11 | 160 |
endoderm | 3.73e-11 | 160 |
presumptive endoderm | 3.73e-11 | 160 |
respiratory system | 6.80e-11 | 74 |
extraembryonic membrane | 2.12e-10 | 14 |
membranous layer | 2.12e-10 | 14 |
segment of respiratory tract | 3.89e-10 | 47 |
chorion | 8.29e-10 | 7 |
foregut | 3.64e-08 | 87 |
epithelial bud | 2.58e-07 | 37 |
pigment epithelium of eye | 2.67e-07 | 11 |
ectodermal placode | 6.19e-07 | 31 |
digestive system | 7.68e-07 | 145 |
digestive tract | 7.68e-07 | 145 |
primitive gut | 7.68e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.10e-12 | 106 |
cell type cancer | 2.13e-08 | 143 |