FFCP PHASE1:Hg19::chr18:21166386..21166479,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:21166386..21166479,-
|short_description=p1@NPC1
|description=CAGE_peak_1_at_NPC1_5end
|association_with_transcript=0bp_to_ENST00000269228,ENST00000540608_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4864 | |EntrezGene=4864 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7897 | |HGNC=7897 | ||
|TSSclassifier=strong | |||
|UniProt=O15118,F5GZD4 | |UniProt=O15118,F5GZD4 | ||
|association_with_transcript=0bp_to_ENST00000269228,ENST00000540608_5end | |||
|cluster_id=chr18:21166386..21166479,- | |||
|coexpression_cluster_id=C3709 | |||
|description=CAGE_peak_1_at_NPC1_5end | |||
|id=chr18:21166386..21166479,- | |||
|ontology_enrichment_celltype=CL:0002194!1.88e-10!63;CL:0000576!1.88e-10!63;CL:0000040!1.88e-10!63;CL:0000559!1.88e-10!63;CL:0002009!1.67e-09!65;CL:0000860!2.32e-07!45;CL:0000066!2.62e-07!254;CL:0002057!6.14e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.85e-13;39!CL:0000234;2.85e-13;39!CL:0000860;2.04e-12;33!CL:0002057;2.04e-12;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,2.00e-10,59;CL:0000576,2.00e-10,59;CL:0000040,2.00e-10,59;CL:0000559,2.00e-10,59;CL:0000473,1.07e-09,48;CL:0000234,1.07e-09,48;CL:0002009,1.92e-09,61;CL:0000066,2.35e-07,253;CL:0000860,6.14e-07,42;CL:0002057,6.14e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!4.36e-22!511;UBERON:0000480!4.32e-19!626;UBERON:0000467!5.93e-19!625;UBERON:0000468!5.74e-15!659;UBERON:0000923!2.47e-13!604;UBERON:0005291!2.47e-13!604;UBERON:0006598!2.47e-13!604;UBERON:0002532!2.47e-13!604;UBERON:0002050!3.31e-13!605;UBERON:0005423!3.31e-13!605;UBERON:0000922!4.89e-12!612;UBERON:0001049!7.63e-09!57;UBERON:0005068!7.63e-09!57;UBERON:0006241!7.63e-09!57;UBERON:0007135!7.63e-09!57;UBERON:0000033!2.21e-08!123;UBERON:0000153!7.38e-08!129;UBERON:0007811!7.38e-08!129;UBERON:0003075!1.08e-07!86;UBERON:0007284!1.08e-07!86;UBERON:0003056!1.27e-07!61;UBERON:0002371!1.56e-07!80;UBERON:0003080!3.15e-07!42;UBERON:0000064!3.79e-07!219;UBERON:0002405!5.22e-07!115;UBERON:0002780!5.74e-07!41;UBERON:0001890!5.74e-07!41;UBERON:0006240!5.74e-07!41;UBERON:0000955!6.28e-07!69;UBERON:0006238!6.28e-07!69;UBERON:0001474!6.29e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005423,4.83e-12,581;UBERON:0000922,8.99e-12,592;UBERON:0002050,1.04e-09,564;UBERON:0000923,1.23e-09,560;UBERON:0010316,1.23e-09,560;UBERON:0005291,1.23e-09,560;UBERON:0006598,1.23e-09,560;UBERON:0010317,1.23e-09,560;UBERON:0002532,1.23e-09,560;UBERON:0010371,4.57e-09,104;UBERON:0001049,1.39e-08,56;UBERON:0005068,1.39e-08,56;UBERON:0006241,1.39e-08,56;UBERON:0007135,1.39e-08,56;UBERON:0002405,4.98e-08,93;UBERON:0003056,8.28e-08,61;UBERON:0003075,9.73e-08,82;UBERON:0007284,9.73e-08,82;UBERON:0000073,1.53e-07,53;UBERON:0002616,1.53e-07,53;UBERON:0002371,2.14e-07,76;UBERON:0002780,5.74e-07,41;UBERON:0001890,5.74e-07,41;UBERON:0003080,5.74e-07,41;UBERON:0006240,5.74e-07,41;UBERON:0001474,8.86e-07,82 | |||
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|short_description=p1@NPC1 | |||
}} | }} |
Latest revision as of 23:45, 18 September 2015
Short description: | p1@NPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NPC1_5end |
Coexpression cluster: | C3709_schwannoma_CD14_corpus_Macrophage_prostate_optic_clear |
Association with transcript: | 0bp_to_ENST00000269228, ENST00000540608_5end |
EntrezGene: | NPC1 |
HGNC: | 7897 |
UniProt: | O15118F5GZD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 2.00e-10 | 59 |
monocyte | 2.00e-10 | 59 |
monoblast | 2.00e-10 | 59 |
promonocyte | 2.00e-10 | 59 |
defensive cell | 1.07e-09 | 48 |
phagocyte | 1.07e-09 | 48 |
macrophage dendritic cell progenitor | 1.92e-09 | 61 |
epithelial cell | 2.35e-07 | 253 |
classical monocyte | 6.14e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.14e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
developing anatomical structure | 4.83e-12 | 581 |
embryo | 8.99e-12 | 592 |
embryonic structure | 1.04e-09 | 564 |
germ layer | 1.23e-09 | 560 |
germ layer / neural crest | 1.23e-09 | 560 |
embryonic tissue | 1.23e-09 | 560 |
presumptive structure | 1.23e-09 | 560 |
germ layer / neural crest derived structure | 1.23e-09 | 560 |
epiblast (generic) | 1.23e-09 | 560 |
ecto-epithelium | 4.57e-09 | 104 |
neural tube | 1.39e-08 | 56 |
neural rod | 1.39e-08 | 56 |
future spinal cord | 1.39e-08 | 56 |
neural keel | 1.39e-08 | 56 |
immune system | 4.98e-08 | 93 |
pre-chordal neural plate | 8.28e-08 | 61 |
neural plate | 9.73e-08 | 82 |
presumptive neural plate | 9.73e-08 | 82 |
regional part of nervous system | 1.53e-07 | 53 |
regional part of brain | 1.53e-07 | 53 |
bone marrow | 2.14e-07 | 76 |
regional part of forebrain | 5.74e-07 | 41 |
forebrain | 5.74e-07 | 41 |
anterior neural tube | 5.74e-07 | 41 |
future forebrain | 5.74e-07 | 41 |
bone element | 8.86e-07 | 82 |