FFCP PHASE1:Hg19::chr7:55086735..55086738,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:55086735..55086738,+
|short_description=p3@EGFR
|description=CAGE_peak_3_at_EGFR_5end
|association_with_transcript=8bp_to_ENST00000420316_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1956 | |EntrezGene=1956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3236 | |HGNC=3236 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000420316_5end | |||
|cluster_id=chr7:55086735..55086738,+ | |||
|coexpression_cluster_id=C2899 | |||
|description=CAGE_peak_3_at_EGFR_5end | |||
|id=chr7:55086735..55086738,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.03e-13!254;CL:0002076!2.66e-10!43;CL:0000223!3.15e-09!59;CL:0000220!5.25e-08!246;CL:0002321!1.27e-07!248;CL:0002368!2.80e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.84e-09;42!CL:0002368;5.11e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.16e-20,253;CL:0002076,1.41e-10,42;CL:0000223,8.65e-10,58;CL:0000076,2.05e-09,63;CL:0002321,1.09e-07,250;CL:0002077,1.59e-07,34;CL:0002368,4.92e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.43e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.21e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.16e-11,14;DOID:305,3.64e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.24e-19!169;UBERON:0000925!1.24e-19!169;UBERON:0006595!1.24e-19!169;UBERON:0001007!3.82e-15!155;UBERON:0001555!3.82e-15!155;UBERON:0007026!3.82e-15!155;UBERON:0000481!8.24e-15!347;UBERON:0003104!4.97e-13!238;UBERON:0009142!4.97e-13!238;UBERON:0001004!4.54e-12!72;UBERON:0000475!5.94e-12!365;UBERON:0003102!1.17e-10!95;UBERON:0000077!2.92e-10!130;UBERON:0004921!1.42e-09!129;UBERON:0004185!1.42e-09!129;UBERON:0000467!2.07e-09!625;UBERON:0000480!3.11e-09!626;UBERON:0000468!1.30e-08!659;UBERON:0000165!2.18e-08!28;UBERON:0000930!2.18e-08!28;UBERON:0000161!2.31e-08!35;UBERON:0000064!3.25e-08!219;UBERON:0002050!3.28e-08!605;UBERON:0005423!3.28e-08!605;UBERON:0002100!3.84e-08!216;UBERON:0001048!4.18e-08!168;UBERON:0000923!4.60e-08!604;UBERON:0005291!4.60e-08!604;UBERON:0006598!4.60e-08!604;UBERON:0002532!4.60e-08!604;UBERON:0000065!5.79e-08!53;UBERON:0001041!6.17e-08!98;UBERON:0000922!8.11e-08!612;UBERON:0000062!8.49e-08!511;UBERON:0001444!3.38e-07!48;UBERON:0000166!4.79e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003729;2.01e-10;13!UBERON:0000486;2.70e-08;12!UBERON:0000344;4.39e-08;20!UBERON:0000165;6.51e-08;28!UBERON:0000065;2.44e-07;44!UBERON:0001004;7.50e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.36e-12,160;UBERON:0000925,2.36e-12,160;UBERON:0006595,2.36e-12,160;UBERON:0001004,6.79e-12,74;UBERON:0003729,4.09e-10,13;UBERON:0000033,3.48e-09,56;UBERON:0000153,1.08e-08,62;UBERON:0007811,1.08e-08,62;UBERON:0000065,2.54e-08,54;UBERON:0001007,4.14e-08,145;UBERON:0001555,4.14e-08,145;UBERON:0007026,4.14e-08,145;UBERON:0004923,6.00e-08,66;UBERON:0001444,6.86e-08,49;UBERON:0003102,7.29e-08,99;UBERON:0000344,7.61e-08,20;UBERON:0000165,3.23e-07,29;UBERON:0000930,3.23e-07,29 | |||
|phase1_expression=0,0.642301571672949,0.422863212287913,0,0,0,0,0.631719873426831,1.04474251279935,0.982935746006035,0.697801167972428,1.31064823278103,0.527533956456907,0.495065411840187,0.994192127183747,2.01697543935533,0,0,0.487932798790507,1.10808952269109,2.65200898617529,0.626909442956176,0,0.547497700291537,0,0,0,0,0,0,0.154816123316076,0.919421224478927,4.819294700452,10.7228662948368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.722878304769133,1.50401373190767,0.724232594804119,0.795285947051099,0,3.30871860074237,4.21285855178871,4.91874799881506,0.392937226493138,5.82872461268068,1.48313777113772,0,0,0,0,0,0,0.198762407366705,0,0,0,0.838998872419812,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,8.72188104285069,0,1.64619665163954,3.44263870114369,2.58152958673932,1.06400514659507,0.560677600142307,0,0.49333509683432,0.311211035399766,0.269421344139376,0.490385709340376,1.81628913173918,1.72852777344,0,0.312160076830321,3.4228309292667,1.04614076386261,0.23486899728753,0.485618833104395,1.26405726032024,2.85815839756851,0.737005903870608,1.34323515528495,1.18800285728205,1.23633464639278,0.910161361938026,0,0.673344455816265,0.625592599359821,2.21651292387346,0,3.37136575378922,3.30523729594513,0.453728732640084,0.717558542755448,0.640672166455702,0.847727604638247,1.20036438433761,0,1.28820270022815,0,2.36286865137773,0,1.26216887122057,0.736399189138395,0.646584227275248,0,0.403008392910561,0.508681776931463,3.86521706326594,4.36393792945335,4.30206893083506,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,2.12952240071719,1.34867752062481,2.89213235860178,2.31617342738027,2.17879444092406,4.03360052488864,2.29213223872279,0.588664395376038,2.69323009862473,0,1.40241773803446,1.6462960453256,0,2.53510069643662,0,2.95394953340702,0,0.122988438543114,2.05881372358231,4.17051084552777,4.49607013030478,1.91005047582099,5.37012981919472,0,0,1.44331342025273,0.34779121492523,1.05667824812239,0,0,0,0,0,0,0,0,4.68669169933885,1.84780341018745,4.25325291727159,6.44821363460508,6.1033127087932,4.21720947081732,0,0,0,0,0.12624243342638,0.126995788584338,0,0,0,0,0,0,0.897048674762886,0.87192013766656,0.66004457238855,1.29271715757778,0,1.690605505112,0.531876233169741,0,0.514414748524284,0,0.532844358032199,0.142977993658148,0,0,0.325736184293735,1.06617584622764,0,3.01439377059586,0,3.39908170018994,0,0,0,0.239624855491583,0,1.42636905040718,0.868687840005475,1.64381058040307,1.07436577943937,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0.858840442033979,0.500170521059677,0.542530047399471,1.45579603071565,1.96271887676878,1.41932173530541,2.92853537481783,0,0,0,1.32845119707087,0.921845842708516,0.955719759148911,1.56640925970192,0,0,0,0,0.303127571446259,0,0.907170879989041,0.248107807818777,0.153461973288062,0.280660094433074,0.896974044789907,0,0.482561763430822,0,1.85051632563187,1.77561725313127,0.739144404124282,0.519254429183621,2.44041794765914,0.483437798366489,4.41114234667227,13.9042293293203,0.459257792658427,0.728364672026868,0.262248829918848,0,0.462092022626489,1.56869953835371,0,0.527758144464379,0,0,0.215915916102139,0,0.270946437543853,0,1.27438136522519,0.831076008928724,0,0,0,0.512900250232778,0,0,5.97637867556789,0,0.330037999682352,5.74265537996172,1.95018073810956,0,1.35339005608971,1.07834031980251,0.767518373630648,1.37836572484531,0.537101224341368,0.580066775656914,0.852266274161009,0.356128142586949,6.28082678371717,14.0298749176527,27.309120473841,12.2400914835215,0.929691098594572,2.83331112147576,0.6970372701606,0,0.532306030317022,0,0.9266210955196,1.14499909393593,1.48863347743867,0.632758849437452,0.190630193923825,1.535386747868,1.71175595213568,1.90921948755562,0.78494864019923,0.359744915166629,0.54907405947211,0.471249609382746,0.202182481573316,0,0,0,1.21856744815642,0,0.272999822815972,0.707027159768564,3.39024349860728,4.41092274836899,0.66343897524122,0.876901770507525,0.578775534266688,0,0.405820753925408,1.54911749049875,0.563391205064483,0.573645408816206,0.0982490410131212,0.35667105148125,0.354761064070598,3.79993743535795,4.28083360847872,0,0,4.8111056362756,9.38423185750102,4.3556393944529,5.46034044505319,3.44404298136984,1.68471475667626,6.65145230305014,7.58087220682966,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,1.02555725490326,0,0,0.568272293612826,4.29740072527842,2.37571744666111,1.22864280839693,0,0.281338832821026,3.67318726575589,0,0,0.398495976502139,1.10513566212459,0,0.613612095012929,0,0.311039587661807,9.88551862620595,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,6.48622655227348,0.254253650292766,8.74634422541365,0,0,0.347249989866585,0,0.361789315876224,1.52581736317083,0.221158519862449,0,0.438770794307945,0.871507708151921,17.567391779104,0.615602068030377,0.9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| ||
|short_description=p3@EGFR | |||
}} | }} |
Latest revision as of 00:48, 19 September 2015
Short description: | p3@EGFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_EGFR_5end |
Coexpression cluster: | C2899_epidermoid_oral_cervical_Small_large_placenta_mucinous |
Association with transcript: | 8bp_to_ENST00000420316_5end |
EntrezGene: | EGFR |
HGNC: | 3236 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.16e-20 | 253 |
endo-epithelial cell | 1.41e-10 | 42 |
endodermal cell | 8.65e-10 | 58 |
squamous epithelial cell | 2.05e-09 | 63 |
embryonic cell | 1.09e-07 | 250 |
ecto-epithelial cell | 1.59e-07 | 34 |
respiratory epithelial cell | 4.92e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.36e-12 | 160 |
endoderm | 2.36e-12 | 160 |
presumptive endoderm | 2.36e-12 | 160 |
respiratory system | 6.79e-12 | 74 |
mouth mucosa | 4.09e-10 | 13 |
head | 3.48e-09 | 56 |
anterior region of body | 1.08e-08 | 62 |
craniocervical region | 1.08e-08 | 62 |
respiratory tract | 2.54e-08 | 54 |
digestive system | 4.14e-08 | 145 |
digestive tract | 4.14e-08 | 145 |
primitive gut | 4.14e-08 | 145 |
organ component layer | 6.00e-08 | 66 |
subdivision of head | 6.86e-08 | 49 |
surface structure | 7.29e-08 | 99 |
mucosa | 7.61e-08 | 20 |
mouth | 3.23e-07 | 29 |
stomodeum | 3.23e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.16e-11 | 14 |
carcinoma | 3.64e-07 | 106 |