FFCP PHASE1:Hg19::chr12:53298672..53298713,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3856 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6446 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=114bp_to_ENST00000550170_5end | |||
|cluster_id=chr12:53298672..53298713,- | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_7_at_KRT8_5end | |||
|id=chr12:53298672..53298713,- | |||
|ontology_enrichment_celltype=CL:0000066!9.33e-49!254;CL:0000223!3.23e-21!59;CL:0002076!1.73e-14!43;CL:0000077!2.13e-14!19;CL:0002251!1.62e-08!21;CL:0002321!2.26e-07!248;CL:0000220!4.91e-07!246;CL:0000076!6.56e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000077;4.29e-21;19!CL:0000349;1.40e-09;19!CL:0002594;4.14e-07;4!CL:0002541;5.29e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.54e-30,253;CL:0000077,3.58e-21,19;CL:0000223,3.18e-13,58;CL:0000349,1.32e-09,19;CL:0002076,2.24e-07,42;CL:0002541,5.40e-07,3;CL:0002594,7.33e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;3.26e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.56e-41!106;DOID:0050687!3.75e-33!143;DOID:162!2.44e-21!235;DOID:14566!4.63e-20!239;DOID:299!4.10e-15!25;DOID:7!9.44e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:299;1.22e-17;25!DOID:305;1.22e-08;106!DOID:7;3.00e-07;39!DOID:170;5.82e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.85e-23,106;DOID:0050687,3.41e-18,143;DOID:299,2.68e-17,25;DOID:162,1.22e-14,235;DOID:14566,5.80e-14,239;DOID:7,3.83e-08,39;DOID:170,5.70e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.62e-27!169;UBERON:0000925!4.62e-27!169;UBERON:0006595!4.62e-27!169;UBERON:0001007!3.78e-22!155;UBERON:0001555!3.78e-22!155;UBERON:0007026!3.78e-22!155;UBERON:0004921!1.80e-20!129;UBERON:0004185!1.80e-20!129;UBERON:0000077!2.08e-19!130;UBERON:0005911!8.62e-19!82;UBERON:0001041!2.51e-16!98;UBERON:0000466!1.70e-15!126;UBERON:0005177!1.71e-14!107;UBERON:0003104!8.56e-14!238;UBERON:0009142!8.56e-14!238;UBERON:0001048!1.95e-13!168;UBERON:0000481!1.31e-11!347;UBERON:0005172!1.70e-11!55;UBERON:0005173!1.70e-11!55;UBERON:0009569!3.77e-11!113;UBERON:0003929!5.11e-11!54;UBERON:0008947!1.81e-10!38;UBERON:0003258!1.81e-10!38;UBERON:0000464!4.78e-10!104;UBERON:0009856!6.64e-10!26;UBERON:0001004!8.66e-10!72;UBERON:0007499!2.48e-09!25;UBERON:0002417!3.64e-09!61;UBERON:0000916!3.64e-09!61;UBERON:0000065!4.26e-09!53;UBERON:0005631!4.50e-09!14;UBERON:0000158!4.50e-09!14;UBERON:0009497!8.59e-09!25;UBERON:0000015!8.59e-09!25;UBERON:0002423!8.59e-09!25;UBERON:0006235!8.59e-09!25;UBERON:0004161!8.59e-09!25;UBERON:0000949!2.82e-08!45;UBERON:0006554!3.16e-08!44;UBERON:0000072!5.58e-08!46;UBERON:0009854!7.09e-08!23;UBERON:0005156!7.10e-08!59;UBERON:0000990!7.10e-08!59;UBERON:0001008!7.61e-08!45;UBERON:0002530!1.11e-07!59;UBERON:0003124!1.42e-07!7;UBERON:0002368!2.39e-07!35;UBERON:0008835!2.52e-07!22;UBERON:0003894!2.52e-07!22;UBERON:0003133!2.88e-07!48;UBERON:0001737!4.80e-07!9;UBERON:0000478!7.07e-07!24;UBERON:0002048!7.97e-07!22;UBERON:0000117!7.97e-07!22;UBERON:0000171!7.97e-07!22;UBERON:0000170!7.97e-07!22;UBERON:0005597!7.97e-07!22;UBERON:0000118!7.97e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.36e-08;10!UBERON:0000158;1.36e-08;10!UBERON:0000478;2.10e-08;24!UBERON:0001737;1.45e-07;9!UBERON:0001557;1.45e-07;9!UBERON:0002423;1.78e-07;25!UBERON:0001310;4.14e-07;4!UBERON:0003124;5.29e-07;3!UBERON:0000920;5.29e-07;3!UBERON:0009856;6.02e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.45e-12,14;UBERON:0000158,5.45e-12,14;UBERON:0004921,8.11e-12,118;UBERON:0004119,8.67e-12,160;UBERON:0000925,8.67e-12,160;UBERON:0006595,8.67e-12,160;UBERON:0009856,2.43e-11,26;UBERON:0007499,2.05e-10,25;UBERON:0003124,6.63e-10,7;UBERON:0001007,1.40e-09,145;UBERON:0001555,1.40e-09,145;UBERON:0007026,1.40e-09,145;UBERON:0005911,1.99e-09,82;UBERON:0001041,5.95e-09,87;UBERON:0000478,2.07e-08,24;UBERON:0009854,3.65e-08,23;UBERON:0005177,8.79e-08,101;UBERON:0001737,1.06e-07,9;UBERON:0005172,1.08e-07,54;UBERON:0005173,1.08e-07,54;UBERON:0009497,2.10e-07,25;UBERON:0000015,2.10e-07,25;UBERON:0002423,2.10e-07,25;UBERON:0006235,2.10e-07,25;UBERON:0004161,2.10e-07,25;UBERON:0008835,2.58e-07,22;UBERON:0003894,2.58e-07,22;UBERON:0000920,5.40e-07,3;UBERON:0001310,7.33e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,5.6518805395347,11.1648186875588,1.96597234917155,4.74780560811216,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0.464448369948228,0,1.50602959389125,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,1.10864698731282,1.40535657109002,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,1.06748995729705,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.860413786167011,0.731842236777572,0.132529768321485,0.464775771478074,0.621966330092223,0.252320850875628,0.36497735907583,0,0,0,0,0,2.01121560067735,1.85443159085912,1.92808823906786,1.7647035637183,0.871517776369625,0.474541238222193,1.21348177344148,1.17732879075208,2.30848294167834,0.738155454624648,2.80483547606892,0.8231480226628,1.47008711385542,1.26755034821831,0,1.18157981336281,0,2.95172252503473,0,0,1.1240175325762,0,0.370353780634118,0,0,0,0,0.939269553886573,0,0,0,18.9649055510226,11.1603201072333,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03417372606222,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0.791951872933429,3.61727252471503,6.10073421020206,4.29883862082845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,3.33440328590885,3.32870879020994,4.83824469327489,0,0,0,0,0,0,0,0,0,0,0,0,8.21844257223031,6.81721999031168,0.644566922551274,0,0,0,1.80479845162965,1.77135275340154,0.784349769176855,0,0.422206515571503,0,0,0.215915916102139,0,0,0.501689773854853,1.01950509218015,4.15538004464362,1.34324852833307,0,0,0.769350375349168,1.96808787419823,0.976135183992909,0.309123034943167,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,1.65284915360978,0.384380134730212,0,0.708104465988849,0,0,0,0,0,0,0,0.286249773483982,0,0,2.2875623270859,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01455188481352,2.16876448669825,2.81695602532241,0.430234056612155,0.491245205065606,3.21003946333125,0.354761064070598,0,0,0,0.349934720244983,0.384888450902048,0,0,0.564862804660675,1.72202149068492,3.36942951335251,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,1.49553699578462,5.77487913158015,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,2.27308917445131,3.34242278632766,4.75143489332222,0.921482106297696,0,0,0.222617410045812,0,0.211125408127993,0,1.38141957765574,0.251932747854276,0,0,0,1.52776196950456,1.43216939740487,0,0,0,0,0,0,0,11.4588214877503,0.0874599999961957,0,0.682760689712998,1.77977555204936,3.54581522651905,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0.922255617552241,5.38545866458633,3.80265801727028,14.3550521879364,7.14461228534526,18.1231823846336,0,0,0,0,0,0.167821586975843,0,0,1.05499032264014,1.95879369790977,2.26164914294305,0.216388639742091,0.995261931078505,1.68069372556344,1.22206028986725,0,0,0,0,0,0,0,0.586993856796269,1.69946265673865,0,2.41981432097328,0,0,0.60129367765797,0.311064574191741,0,0.330991955875499,0,0,0.284609546029793,0,7.11594927174037,0.685946781900644,0.34823682632161,0.34945333648406,0.343972064943233,0.870806981601766,0.365446585430928,0.739039113478883,0.387956065953678,0.794305140223502,0,0.274083849293502,0,0,0.782205530939212,0.64127056201227,2.56143593687223,10.9895285270172,1.00863292007874,0,0.343189995723929,0.288109595976299,0.248505071130865,0.707082103850386,0,0.418411385249333,0,0.288950589901519,0,0,0,0,0,0,0.458320848023367,0.717873024576814,3.19486400798386,0,0.446342914883745,0.201550417460179,0,4.65983798109815,0.630265458457789,1.483485450861,0.674035438541849,1.37798474120648,0,0,0,0.643012593860077,1.37539436597234,0.415440338029185,0,0,0,0,0.551639951094387,0.209818352539992,0.211200673038813,0.896436696664224,0.383830394638891,0,0,3.051222451857,0,0,0,0,0,0,0,0.439656701034247,1.32506888912221,0,0,2.73738940614927,0.704815022316672,0.747511887973863,0,0.828478110694391,0,0,0,0,0,0,0,0,1.41348686625211,0,0,0,0,0,0,0,0.124980407962107,0,0,1.88212655758537,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0.465788870628778,0,0,0.521745061811734,1.50257608997218,8.75851987988229,0.813741466409323,0,1.28892668450986,0,0.398095888698616,0,0,0,0,2.69667762570225,3.00218227924896,0.782982875895635,3.85400073370863,3.93588206350518,2.93684045407761,2.8654214573038,7.72003617902431,4.82424909073156,0.530067437837643,10.2244440283585,2.70307905044916,1.02496607435179,2.76344273384959,3.3424595179512,0,0,0,0,0.327609848846413,1.47463745252232,1.47918486351039,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588886311006154,0.471878893390961,0.550285795565037,1.96393632455575,0,0,0,0.300841313397029,0,0.7815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| |||
|short_description=p7@KRT8 | |||
}} |
Latest revision as of 01:06, 19 September 2015
Short description: | p7@KRT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_KRT8_5end |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | 114bp_to_ENST00000550170_5end |
EntrezGene: | KRT8 |
HGNC: | 6446 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.54e-30 | 253 |
mesothelial cell | 3.58e-21 | 19 |
endodermal cell | 3.18e-13 | 58 |
extraembryonic cell | 1.32e-09 | 19 |
endo-epithelial cell | 2.24e-07 | 42 |
chorionic membrane mesenchymal stem cell | 5.40e-07 | 3 |
smooth muscle cell of the umbilical artery | 7.33e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.45e-12 | 14 |
membranous layer | 5.45e-12 | 14 |
subdivision of digestive tract | 8.11e-12 | 118 |
endoderm-derived structure | 8.67e-12 | 160 |
endoderm | 8.67e-12 | 160 |
presumptive endoderm | 8.67e-12 | 160 |
sac | 2.43e-11 | 26 |
epithelial sac | 2.05e-10 | 25 |
chorion | 6.63e-10 | 7 |
digestive system | 1.40e-09 | 145 |
digestive tract | 1.40e-09 | 145 |
primitive gut | 1.40e-09 | 145 |
endo-epithelium | 1.99e-09 | 82 |
foregut | 5.95e-09 | 87 |
extraembryonic structure | 2.07e-08 | 24 |
digestive tract diverticulum | 3.65e-08 | 23 |
trunk region element | 8.79e-08 | 101 |
larynx | 1.06e-07 | 9 |
abdomen element | 1.08e-07 | 54 |
abdominal segment element | 1.08e-07 | 54 |
epithelium of foregut-midgut junction | 2.10e-07 | 25 |
anatomical boundary | 2.10e-07 | 25 |
hepatobiliary system | 2.10e-07 | 25 |
foregut-midgut junction | 2.10e-07 | 25 |
septum transversum | 2.10e-07 | 25 |
hepatic diverticulum | 2.58e-07 | 22 |
liver primordium | 2.58e-07 | 22 |
egg chorion | 5.40e-07 | 3 |
umbilical artery | 7.33e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.85e-23 | 106 |
cell type cancer | 3.41e-18 | 143 |
adenocarcinoma | 2.68e-17 | 25 |
cancer | 1.22e-14 | 235 |
disease of cellular proliferation | 5.80e-14 | 239 |
disease of anatomical entity | 3.83e-08 | 39 |
endocrine gland cancer | 5.70e-07 | 6 |