FFCP PHASE1:Hg19::chr18:28622774..28622792,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:28622774..28622792,- to FFCP PHASE1:Hg19::chr18:28622774..28622792,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1825 | |EntrezGene=1825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3037 | |HGNC=3037 | ||
|TSSclassifier=strong | |||
|UniProt=Q14574 | |UniProt=Q14574 | ||
|association_with_transcript=0bp_to_ENST00000360428,ENST00000434452,NM_001941,NM_024423,uc002kwi.3,uc002kwj.3_5end | |||
|cluster_id=chr18:28622774..28622792,- | |||
|coexpression_cluster_id=C748 | |||
|description=CAGE_peak_3_at_DSC3_5end | |||
|id=chr18:28622774..28622792,- | |||
|ontology_enrichment_celltype=CL:0000066!1.81e-15!254;CL:0002076!1.38e-13!43;CL:0000076!2.00e-09!62;CL:0002368!8.29e-09!13;CL:0000223!1.09e-08!59;CL:0002159!7.70e-08!13;CL:0002321!2.35e-07!248;CL:0002077!2.41e-07!33;CL:0000220!2.97e-07!246;CL:0002251!3.09e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.44e-14;19!CL:0002076;3.01e-14;42!CL:0002368;4.24e-12;13!CL:0002159;1.92e-11;14!CL:0000622;1.33e-09;5!CL:0002251;1.07e-08;20!CL:0000154;6.90e-08;6!CL:0000244;1.09e-07;4!CL:0000731;1.09e-07;4!CL:0000150;5.29e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.42e-18,253;CL:0002076,4.80e-18,42;CL:0000349,1.24e-14,19;CL:0002368,3.52e-12,13;CL:0000223,4.38e-12,58;CL:0002159,1.81e-11,14;CL:0000076,3.95e-10,63;CL:0000622,1.47e-09,5;CL:0002251,1.08e-08,20;CL:0000154,7.48e-08,6;CL:0000244,1.01e-07,4;CL:0000731,1.01e-07,4;CL:0002077,4.22e-07,34;CL:0000150,5.84e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;5.23e-07;58 | |||
|ontology_enrichment_disease=DOID:1749!6.06e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.18e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.36e-09,14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.73e-14;24!UBERON:0005631;1.62e-10;10!UBERON:0000158;1.62e-10;10!UBERON:0000486;1.67e-08;12!UBERON:0000165;7.66e-08;28!UBERON:0010371;1.37e-07;31!UBERON:0000161;1.91e-07;19!UBERON:0000166;1.91e-07;19!UBERON:0005910;2.66e-07;6!UBERON:0001987;8.92e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.85e-16,14;UBERON:0000158,8.85e-16,14;UBERON:0000478,3.56e-14,24;UBERON:0004119,3.31e-13,160;UBERON:0000925,3.31e-13,160;UBERON:0006595,3.31e-13,160;UBERON:0003124,4.26e-11,7;UBERON:0000153,1.56e-10,62;UBERON:0007811,1.56e-10,62;UBERON:0000033,2.84e-10,56;UBERON:0001004,2.23e-09,74;UBERON:0000166,5.03e-09,22;UBERON:0008814,1.22e-08,18;UBERON:0000161,2.45e-08,36;UBERON:0001444,7.39e-08,49;UBERON:0003102,1.24e-07,99;UBERON:0000165,1.92e-07,29;UBERON:0000930,1.92e-07,29;UBERON:0004923,2.14e-07,66;UBERON:0005910,2.53e-07,6;UBERON:0003100,5.52e-07,41;UBERON:0001987,6.05e-07,4;UBERON:0004340,6.05e-07,4 | |||
|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0.245733936501509,0,7.20856528029568,5.53910654279752,0.247532705920093,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0,0,0,0,0,0,0,0.309632246632152,1.83884244895785,3.614471025339,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,2.81297636055767,0,0,0,0,0,0.567208902984407,1.99556457716308,0.87834785693126,0.130979075497713,6.55731518926576,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,5.23312862571041,0,0,0,0,0,2.24271040056923,0,0,4.35695449559673,0.942974704487816,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60894021268048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1843473012255,10.9098448236334,11.1853792201711,0,0.530119073285941,0.232387885739037,0.414644220061482,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4694440679884,0,0,0,0,0,0,0.857839051492628,18.8770490902836,7.86812272803337,5.93120937228622,19.1658081478156,0,0,0,0,7.86638251380005,0,0,0,0,0,0,0,0,7.49870671894216,14.4464630251019,9.21538132075512,15.2249488594842,11.3347236020445,4.60059214998253,0,0,0,0,0,0.063497894292169,0,0,3.4214489204541,0,0,0,0,0,0,3.10252117818667,0,0,0,0,0,0,0,0,2.17048642156577,0.823240336780769,0,0.710783897485092,1.58390374586686,3.31583314765545,0.871533458600294,4.29883862082845,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0.637938751653163,0,0,0,0.613457458595699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,4.99306318531491,3.93107381328584,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,0,6.01519410909855,10.7734757054999,0,0,0,0,0.15403067420883,0,0,0.316654886678627,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0.769350375349168,1.64007322849853,3.57916234130733,0.309123034943167,0,0,8.03971753194641,3.25030123018261,0,0,0,0.15350367472613,0.551346289938122,0.859361958946189,0.290033387828457,0.170453254832202,0,16.5284915360978,12.684544446097,18.7590687367039,15.1736671283325,0,0.94443704049192,0,0,0,0,0,0,0,3.48017367190598,2.09693213316207,0,0.42793898803392,0,0,1.2591072030832,0,1.06031162111118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0.92947049429925,0.845086807596724,4.15892921391749,9.23540985523339,0.7133421029625,0,0,0,0,0,10.6806545125318,1.34060455107157,9.80018863751903,0.847294206991012,2.58303223602738,8.42357378338128,6.65145230305014,20.4453826184194,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,11.9372242368845,7.42411702081597,15.9723565091601,0,0,1.78093928036649,0,0,0.398495976502139,0,0,0.102268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,1.2517279311405,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,15.6154593592036,1.69290568708354,0,0,0.538545866458633,0,7.33702667383415,1.83195186803725,7.46248686426089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0.593042257361244,0.370691816839509,0.417687798021821,0,0,0,0,0.782658475728359,0,0.394584402849391,0,0.30607276163049,0.379119477770928,0.300646838828985,1.24425829676697,0,0,0,0,0,0,0.173559738335131,8.52533857505085,1.91530254476886,0.17472666824203,1.0319161948297,0,0,0,8.14707738502723,0,0.90392296312213,0,0,0.0633107959558787,0,0,0,0.799238438328521,0,2.86341490414789,0.686379991447858,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.798716001995964,0.429226048136571,0,1.07493555978762,0,0,0,0,0,1.57483970423598,0,0,0,0,0.275078873194468,0.415440338029185,0.449947783103001,5.41661368190565,0,7.04412843958459,0,0,2.74560874950457,0.179287339332845,0.575745591958336,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,1.24210365501008,0.414706207840855,0.53168342911599,1.04349012362347,5.25901631490265,2.66563648518157,1.22061219961398,0,2.04080058380728,0,1.59238355479446,0,0,0,0,0,5.14659819299822,1.04397716786085,1.58694147858591,0.926089897295336,0,0.358177682162975,0.308801447160972,3.0699766941019,1.41351316756705,0.578742114812744,0.168942440653073,0,1.72715170865599,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8689147101889,14.3077769807584,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12220417704308,0.589848616738702,1.83428598521679,2.19498765685643,0,0,0,0.150420656698515,0,0,0,1.47394725759087,0,0,0,0,0,0,0,4.96211178389294,0,0.894336993477167,0,0,0.606965604236632,0,1.95145214357805,0,0,0,0.0657727735628491,0,2.11339663594931,0.706437835654626,0,2.24217730651031,0,0,0.47775168788705,0,0,0,0,0,8.08143040235844,22.7055574534953,12.4426739126537,0.860454717640555,0,0,0,1.60374807980835,0,0,0,0,0,0,0,0,4.85710993059139,0,0,0,1.1294608203896,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0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| 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| ||
|short_description=p3@DSC3 | |||
}} | }} |
Latest revision as of 04:28, 19 September 2015
Short description: | p3@DSC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DSC3_5end |
Coexpression cluster: | C748_amniotic_keratoacanthoma_salivary_Keratinocyte_maxillary_Corneal_esophagus |
Association with transcript: | 0bp_to_ENST00000360428, ENST00000434452, NM_001941, NM_024423, uc002kwi.3, uc002kwj.3_5end |
EntrezGene: | DSC3 |
HGNC: | 3037 |
UniProt: | Q14574 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.42e-18 | 253 |
endo-epithelial cell | 4.80e-18 | 42 |
extraembryonic cell | 1.24e-14 | 19 |
respiratory epithelial cell | 3.52e-12 | 13 |
endodermal cell | 4.38e-12 | 58 |
general ecto-epithelial cell | 1.81e-11 | 14 |
squamous epithelial cell | 3.95e-10 | 63 |
acinar cell | 1.47e-09 | 5 |
epithelial cell of alimentary canal | 1.08e-08 | 20 |
protein secreting cell | 7.48e-08 | 6 |
transitional epithelial cell | 1.01e-07 | 4 |
urothelial cell | 1.01e-07 | 4 |
ecto-epithelial cell | 4.22e-07 | 34 |
glandular epithelial cell | 5.84e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.85e-16 | 14 |
membranous layer | 8.85e-16 | 14 |
extraembryonic structure | 3.56e-14 | 24 |
endoderm-derived structure | 3.31e-13 | 160 |
endoderm | 3.31e-13 | 160 |
presumptive endoderm | 3.31e-13 | 160 |
chorion | 4.26e-11 | 7 |
anterior region of body | 1.56e-10 | 62 |
craniocervical region | 1.56e-10 | 62 |
head | 2.84e-10 | 56 |
respiratory system | 2.23e-09 | 74 |
oral opening | 5.03e-09 | 22 |
pharyngeal arch system | 1.22e-08 | 18 |
orifice | 2.45e-08 | 36 |
subdivision of head | 7.39e-08 | 49 |
surface structure | 1.24e-07 | 99 |
mouth | 1.92e-07 | 29 |
stomodeum | 1.92e-07 | 29 |
organ component layer | 2.14e-07 | 66 |
transitional epithelium | 2.53e-07 | 6 |
female organism | 5.52e-07 | 41 |
placenta | 6.05e-07 | 4 |
allantois | 6.05e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.36e-09 | 14 |