FFCP PHASE1:Hg19::chr1:18957605..18957623,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5081 | |EntrezGene=5081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8621 | |HGNC=8621 | ||
|TSSclassifier=strong | |||
|UniProt=P23759,E9PFV9,Q2PJS5 | |UniProt=P23759,E9PFV9,Q2PJS5 | ||
|association_with_transcript=105bp_to_ENST00000375375,NM_001135254,NM_002584,NM_013945,uc001bay.2,uc001baz.2,uc010oct.1_5end | |association_with_transcript=105bp_to_ENST00000375375,NM_001135254,NM_002584,NM_013945,uc001bay.2,uc001baz.2,uc010oct.1_5end | ||
|cluster_id=chr1:18957605..18957623,+ | |||
|coexpression_cluster_id=C3915 | |coexpression_cluster_id=C3915 | ||
|description=CAGE_peak_3_at_PAX7_5end | |description=CAGE_peak_3_at_PAX7_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000188!4.16e-09!9 | |ontology_enrichment_celltype=CL:0000188!4.16e-09!9 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.95e-15;1 | |ontology_enrichment_development_v019=UBERON:0005425;2.95e-15;1 | ||
|ontology_enrichment_disease=DOID:171!1.35e-13!10 | |ontology_enrichment_disease=DOID:171!1.35e-13!10 | ||
|ontology_enrichment_disease_v019=DOID:171;1.51e-35;10!DOID:3095;3.18e-16;22!DOID:2994;3.18e-16;22!DOID:3193;1.44e-08;2!DOID:962;1.44e-08;2!DOID:1115;4.52e-07;20 | |ontology_enrichment_disease_v019=DOID:171;1.51e-35;10!DOID:3095;3.18e-16;22!DOID:2994;3.18e-16;22!DOID:3193;1.44e-08;2!DOID:962;1.44e-08;2!DOID:1115;4.52e-07;20 | ||
|ontology_enrichment_disease_v019_2=DOID:171,1.57e-35,10;DOID:3095,3.23e-16,22;DOID:2994,3.23e-16,22;DOID:3193,1.50e-08,2;DOID:962,1.50e-08,2;DOID:1115,4.43e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0003714!5.45e-12!2;UBERON:0000341!1.04e-11!2;UBERON:0001723!3.95e-08!3;UBERON:0001033!3.95e-08!3;UBERON:0010056!3.95e-08!3;UBERON:0002426!9.15e-07!1;UBERON:0003831!9.15e-07!1;UBERON:0003898!9.15e-07!1;UBERON:0004830!9.15e-07!1;UBERON:0001774!9.15e-07!1;UBERON:0003830!9.15e-07!1;UBERON:0005175!9.15e-07!1;UBERON:0003897!9.15e-07!1;UBERON:0001103!9.15e-07!1;UBERON:0010084!9.15e-07!1;UBERON:0000941!9.67e-07!1;UBERON:0004904!9.67e-07!1;UBERON:0002464!9.67e-07!1;UBERON:0001021!9.67e-07!1;UBERON:0001785!9.67e-07!1 | |ontology_enrichment_uberon=UBERON:0003714!5.45e-12!2;UBERON:0000341!1.04e-11!2;UBERON:0001723!3.95e-08!3;UBERON:0001033!3.95e-08!3;UBERON:0010056!3.95e-08!3;UBERON:0002426!9.15e-07!1;UBERON:0003831!9.15e-07!1;UBERON:0003898!9.15e-07!1;UBERON:0004830!9.15e-07!1;UBERON:0001774!9.15e-07!1;UBERON:0003830!9.15e-07!1;UBERON:0005175!9.15e-07!1;UBERON:0003897!9.15e-07!1;UBERON:0001103!9.15e-07!1;UBERON:0010084!9.15e-07!1;UBERON:0000941!9.67e-07!1;UBERON:0004904!9.67e-07!1;UBERON:0002464!9.67e-07!1;UBERON:0001021!9.67e-07!1;UBERON:0001785!9.67e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.98e-57;4!UBERON:0000923;7.98e-57;4!UBERON:0010316;7.98e-57;4!UBERON:0005291;7.98e-57;4!UBERON:0002050;1.41e-45;5!UBERON:0005423;1.41e-45;5!UBERON:0003714;2.96e-29;2!UBERON:0000341;1.07e-28;2!UBERON:0002426;2.06e-15;1!UBERON:0003831;2.06e-15;1!UBERON:0003898;2.06e-15;1!UBERON:0004830;2.06e-15;1!UBERON:0003830;2.06e-15;1!UBERON:0005175;2.06e-15;1!UBERON:0001774;2.06e-15;1!UBERON:0001103;2.06e-15;1!UBERON:0000941;2.95e-15;1!UBERON:0001785;2.95e-15;1!UBERON:0002464;2.95e-15;1!UBERON:0004904;2.95e-15;1!UBERON:0001021;2.95e-15;1!UBERON:0000974;3.04e-10;6!UBERON:0000922;5.51e-10;49!UBERON:0005090;2.31e-08;2!UBERON:0001630;2.31e-08;2!UBERON:0005162;2.77e-08;2!UBERON:0000122;2.77e-08;2!UBERON:0000010;3.04e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0002346;7.98e-57;4!UBERON:0000923;7.98e-57;4!UBERON:0010316;7.98e-57;4!UBERON:0005291;7.98e-57;4!UBERON:0002050;1.41e-45;5!UBERON:0005423;1.41e-45;5!UBERON:0003714;2.96e-29;2!UBERON:0000341;1.07e-28;2!UBERON:0002426;2.06e-15;1!UBERON:0003831;2.06e-15;1!UBERON:0003898;2.06e-15;1!UBERON:0004830;2.06e-15;1!UBERON:0003830;2.06e-15;1!UBERON:0005175;2.06e-15;1!UBERON:0001774;2.06e-15;1!UBERON:0001103;2.06e-15;1!UBERON:0000941;2.95e-15;1!UBERON:0001785;2.95e-15;1!UBERON:0002464;2.95e-15;1!UBERON:0004904;2.95e-15;1!UBERON:0001021;2.95e-15;1!UBERON:0000974;3.04e-10;6!UBERON:0000922;5.51e-10;49!UBERON:0005090;2.31e-08;2!UBERON:0001630;2.31e-08;2!UBERON:0005162;2.77e-08;2!UBERON:0000122;2.77e-08;2!UBERON:0000010;3.04e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,2.56e-29,2;UBERON:0000341,1.43e-28,2;UBERON:0002426,2.06e-15,1;UBERON:0003831,2.06e-15,1;UBERON:0003898,2.06e-15,1;UBERON:0004830,2.06e-15,1;UBERON:0003830,2.06e-15,1;UBERON:0005175,2.06e-15,1;UBERON:0001774,2.06e-15,1;UBERON:0001103,2.06e-15,1;UBERON:0010084,2.06e-15,1;UBERON:0000941,2.38e-15,1;UBERON:0001785,2.38e-15,1;UBERON:0002464,2.38e-15,1;UBERON:0004904,2.38e-15,1;UBERON:0001021,2.38e-15,1;UBERON:0003902,2.38e-15,1;UBERON:0005425,2.38e-15,1;UBERON:0005090,2.31e-08,2;UBERON:0001630,2.31e-08,2;UBERON:0005162,2.48e-08,2;UBERON:0000122,2.48e-08,2;UBERON:0000010,2.95e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.247528499761764,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.54048765428183,0,0,0,0,0,0,0,0,0.697118721393016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75251083871271,8.07784696386395,5.20530209887809,7.26238393365217,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23109871051734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56346471368254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,11.598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,7.88857810965923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,1.1903221573187,0,0,0,0,0,0.870866991587845,4.10679961302337,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.247528499761764,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0,0.170453254832202,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.54048765428183,0,0,0,0,0,0,0,0,0.697118721393016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21031058919516,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75251083871271,8.07784696386395,5.20530209887809,7.26238393365217,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23109871051734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56346471368254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,11.598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,7.88857810965923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,1.1903221573187,0,0,0,0,0,0.870866991587845,4.10679961302337,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p3@PAX7 | |short_description=p3@PAX7 | ||
}} | }} |
Latest revision as of 09:08, 19 September 2015
Short description: | p3@PAX7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAX7_5end |
Coexpression cluster: | C3915_neuroectodermal_skeletal_neuroepithelioma_rhabdomyosarcoma_synovial_carcinoid_tongue |
Association with transcript: | 105bp_to_ENST00000375375, NM_001135254, NM_002584, NM_013945, uc001bay.2, uc001baz.2, uc010oct.1_5end |
EntrezGene: | PAX7 |
HGNC: | 8621 |
UniProt: | P23759E9PFV9Q2PJS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tissue | 2.56e-29 | 2 |
throat | 1.43e-28 | 2 |
chest muscle | 2.06e-15 | 1 |
respiratory system muscle | 2.06e-15 | 1 |
skeletal muscle of trunk | 2.06e-15 | 1 |
respiratory system skeletal muscle | 2.06e-15 | 1 |
thoracic segment muscle | 2.06e-15 | 1 |
chest organ | 2.06e-15 | 1 |
muscle of trunk | 2.06e-15 | 1 |
diaphragm | 2.06e-15 | 1 |
future diaphragm | 2.06e-15 | 1 |
cranial nerve II | 2.38e-15 | 1 |
cranial nerve | 2.38e-15 | 1 |
nerve trunk | 2.38e-15 | 1 |
nerve connecting eye with brain | 2.38e-15 | 1 |
nerve | 2.38e-15 | 1 |
retinal neural layer | 2.38e-15 | 1 |
presumptive neural retina | 2.38e-15 | 1 |
muscle structure | 2.31e-08 | 2 |
muscle organ | 2.31e-08 | 2 |
multi cell component structure | 2.48e-08 | 2 |
neuron projection bundle | 2.48e-08 | 2 |
peripheral nervous system | 2.95e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.57e-35 | 10 |
germ cell and embryonal cancer | 3.23e-16 | 22 |
germ cell cancer | 3.23e-16 | 22 |
peripheral nerve sheath neoplasm | 1.50e-08 | 2 |
neurofibroma | 1.50e-08 | 2 |
sarcoma | 4.43e-07 | 20 |