FFCP PHASE1:Hg19::chr12:56583362..56583369,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6601 | |EntrezGene=6601 | ||
| Line 8: | Line 8: | ||
|UniProt=F8VTJ5,Q59GV3,Q8TAQ2 | |UniProt=F8VTJ5,Q59GV3,Q8TAQ2 | ||
|association_with_transcript=-11bp_to_ENST00000394023,NM_001130420,NM_003075,NM_139067,uc001ska.2,uc001skb.2,uc001skc.2,uc001skd.2,uc010sqf.1_5end | |association_with_transcript=-11bp_to_ENST00000394023,NM_001130420,NM_003075,NM_139067,uc001ska.2,uc001skb.2,uc001skc.2,uc001skd.2,uc010sqf.1_5end | ||
|cluster_id=chr12:56583362..56583369,- | |||
|description=CAGE_peak_7_at_SMARCC2_5end | |description=CAGE_peak_7_at_SMARCC2_5end | ||
|id=chr12:56583362..56583369,- | |id=chr12:56583362..56583369,- | ||
Latest revision as of 10:19, 19 September 2015
| Short description: | p7@SMARCC2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_7_at_SMARCC2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -11bp_to_ENST00000394023, NM_001130420, NM_003075, NM_139067, uc001ska.2, uc001skb.2, uc001skc.2, uc001skd.2, uc010sqf.1_5end |
| EntrezGene: | SMARCC2 |
| HGNC: | 11105 |
| UniProt: | F8VTJ5Q59GV3Q8TAQ2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p7@SMARCC2 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| androgen binding protein secreting cell | 1.32e-09 | 1 |
| seminiferous tubule epithelial cell | 1.32e-09 | 1 |
| Sertoli cell | 1.32e-09 | 1 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| regional part of telencephalon | 8.71e-39 | 32 |
| cerebral hemisphere | 8.71e-39 | 32 |
| brain grey matter | 1.92e-36 | 34 |
| gray matter | 1.92e-36 | 34 |
| telencephalon | 1.92e-36 | 34 |
| regional part of cerebral cortex | 3.30e-33 | 22 |
| regional part of forebrain | 5.32e-30 | 41 |
| forebrain | 5.32e-30 | 41 |
| anterior neural tube | 5.32e-30 | 41 |
| future forebrain | 5.32e-30 | 41 |
Showing 1 to 10 of 73 entries
