FFCP PHASE1:Hg19::chr11:65779283..65779289,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1474 | |EntrezGene=1474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2478 | |HGNC=2478 | ||
|TSSclassifier=strong | |||
|UniProt=Q15828 | |UniProt=Q15828 | ||
|association_with_transcript=-22bp_to_ENST00000312134_5end | |association_with_transcript=-22bp_to_ENST00000312134_5end | ||
|cluster_id=chr11:65779283..65779289,+ | |||
|coexpression_cluster_id=C1349 | |coexpression_cluster_id=C1349 | ||
|description=CAGE_peak_10_at_CST6_5end | |description=CAGE_peak_10_at_CST6_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002541!3.85e-12!3;CL:0002621!3.33e-11!3;CL:0002322!1.06e-10!5;CL:0000066!1.19e-08!254;CL:1000415!6.54e-08!2;CL:0002536!1.02e-07!2;CL:0002537!4.03e-07!5 | |ontology_enrichment_celltype=CL:0002541!3.85e-12!3;CL:0002621!3.33e-11!3;CL:0002322!1.06e-10!5;CL:0000066!1.19e-08!254;CL:1000415!6.54e-08!2;CL:0002536!1.02e-07!2;CL:0002537!4.03e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.04e-54;3!CL:0000322;8.94e-25;3!CL:0000349;8.61e-24;19!CL:0002537;2.70e-15;5!CL:0002202;6.35e-09;9!CL:0002632;6.35e-09;9!CL:0000134;9.83e-07;55 | |ontology_enrichment_celltype_v019=CL:0002541;1.04e-54;3!CL:0000322;8.94e-25;3!CL:0000349;8.61e-24;19!CL:0002537;2.70e-15;5!CL:0002202;6.35e-09;9!CL:0002632;6.35e-09;9!CL:0000134;9.83e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,8.69e-55,3;CL:0000322,1.29e-24,3;CL:0000349,9.48e-24,19;CL:0002537,3.35e-15,5;CL:0002202,7.16e-09,9;CL:0002632,7.16e-09,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4468!5.70e-08!2 | |ontology_enrichment_disease=DOID:4468!5.70e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4929;1.72e-10;2!DOID:3910;2.72e-10;2 | |ontology_enrichment_disease_v019=DOID:4929;1.72e-10;2!DOID:3910;2.72e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4929,1.72e-10,2;DOID:3910,3.58e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.37e-19!14;UBERON:0000158!3.37e-19!14;UBERON:0005911!3.62e-13!82;UBERON:0000305!1.69e-12!7;UBERON:0000476!3.85e-12!3;UBERON:0000920!3.85e-12!3;UBERON:0001949!3.33e-11!3;UBERON:0004871!6.82e-11!8;UBERON:0000478!1.87e-10!24;UBERON:0000058!1.99e-09!26;UBERON:0003124!1.48e-08!7;UBERON:0002294!1.69e-08!7;UBERON:0001173!1.69e-08!7;UBERON:0004912!1.69e-08!7;UBERON:0004119!8.15e-08!169;UBERON:0000925!8.15e-08!169;UBERON:0006595!8.15e-08!169;UBERON:0000161!1.25e-07!35;UBERON:0004923!1.86e-07!57;UBERON:0001007!2.09e-07!155;UBERON:0001555!2.09e-07!155;UBERON:0007026!2.09e-07!155;UBERON:0005153!2.44e-07!37;UBERON:0003064!3.65e-07!37;UBERON:0006554!5.36e-07!44;UBERON:0002048!7.58e-07!22;UBERON:0000117!7.58e-07!22;UBERON:0000171!7.58e-07!22;UBERON:0000170!7.58e-07!22;UBERON:0005597!7.58e-07!22;UBERON:0000118!7.58e-07!22;UBERON:0001008!8.55e-07!45 | |ontology_enrichment_uberon=UBERON:0005631!3.37e-19!14;UBERON:0000158!3.37e-19!14;UBERON:0005911!3.62e-13!82;UBERON:0000305!1.69e-12!7;UBERON:0000476!3.85e-12!3;UBERON:0000920!3.85e-12!3;UBERON:0001949!3.33e-11!3;UBERON:0004871!6.82e-11!8;UBERON:0000478!1.87e-10!24;UBERON:0000058!1.99e-09!26;UBERON:0003124!1.48e-08!7;UBERON:0002294!1.69e-08!7;UBERON:0001173!1.69e-08!7;UBERON:0004912!1.69e-08!7;UBERON:0004119!8.15e-08!169;UBERON:0000925!8.15e-08!169;UBERON:0006595!8.15e-08!169;UBERON:0000161!1.25e-07!35;UBERON:0004923!1.86e-07!57;UBERON:0001007!2.09e-07!155;UBERON:0001555!2.09e-07!155;UBERON:0007026!2.09e-07!155;UBERON:0005153!2.44e-07!37;UBERON:0003064!3.65e-07!37;UBERON:0006554!5.36e-07!44;UBERON:0002048!7.58e-07!22;UBERON:0000117!7.58e-07!22;UBERON:0000171!7.58e-07!22;UBERON:0000170!7.58e-07!22;UBERON:0005597!7.58e-07!22;UBERON:0000118!7.58e-07!22;UBERON:0001008!8.55e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.04e-54;3!UBERON:0000920;1.04e-54;3!UBERON:0005631;6.15e-45;10!UBERON:0000158;6.15e-45;10!UBERON:0004821;8.94e-25;3!UBERON:0007499;8.94e-25;3!UBERON:0003215;8.94e-25;3!UBERON:0010368;8.94e-25;3!UBERON:0009911;8.94e-25;3!UBERON:0002299;8.94e-25;3!UBERON:0006524;8.94e-25;3!UBERON:0008874;8.94e-25;3!UBERON:0002169;8.94e-25;3!UBERON:0004894;8.94e-25;3!UBERON:0004913;1.30e-19;1!UBERON:0003703;1.30e-19;1!UBERON:0001174;1.30e-19;1!UBERON:0004914;1.30e-19;1!UBERON:0002394;4.70e-19;4!UBERON:0003928;4.70e-19;4!UBERON:0000478;7.05e-19;24!UBERON:0009856;7.41e-19;4!UBERON:0000058;7.28e-17;10!UBERON:0002294;2.55e-11;7!UBERON:0001173;2.55e-11;7!UBERON:0000305;3.30e-11;7!UBERON:0004903;2.72e-10;2!UBERON:0002173;2.72e-10;2!UBERON:0002186;2.72e-10;2!UBERON:0002114;2.05e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0003124;1.04e-54;3!UBERON:0000920;1.04e-54;3!UBERON:0005631;6.15e-45;10!UBERON:0000158;6.15e-45;10!UBERON:0004821;8.94e-25;3!UBERON:0007499;8.94e-25;3!UBERON:0003215;8.94e-25;3!UBERON:0010368;8.94e-25;3!UBERON:0009911;8.94e-25;3!UBERON:0002299;8.94e-25;3!UBERON:0006524;8.94e-25;3!UBERON:0008874;8.94e-25;3!UBERON:0002169;8.94e-25;3!UBERON:0004894;8.94e-25;3!UBERON:0004913;1.30e-19;1!UBERON:0003703;1.30e-19;1!UBERON:0001174;1.30e-19;1!UBERON:0004914;1.30e-19;1!UBERON:0002394;4.70e-19;4!UBERON:0003928;4.70e-19;4!UBERON:0000478;7.05e-19;24!UBERON:0009856;7.41e-19;4!UBERON:0000058;7.28e-17;10!UBERON:0002294;2.55e-11;7!UBERON:0001173;2.55e-11;7!UBERON:0000305;3.30e-11;7!UBERON:0004903;2.72e-10;2!UBERON:0002173;2.72e-10;2!UBERON:0002186;2.72e-10;2!UBERON:0002114;2.05e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,8.69e-55,3;UBERON:0005631,3.89e-32,14;UBERON:0000158,3.89e-32,14;UBERON:0004821,1.29e-24,3;UBERON:0003215,1.29e-24,3;UBERON:0010368,1.29e-24,3;UBERON:0009911,1.29e-24,3;UBERON:0002299,1.29e-24,3;UBERON:0006524,1.29e-24,3;UBERON:0008874,1.29e-24,3;UBERON:0002169,1.29e-24,3;UBERON:0004894,1.29e-24,3;UBERON:0003124,5.66e-24,7;UBERON:0004913,1.30e-19,1;UBERON:0003703,1.30e-19,1;UBERON:0001174,1.30e-19,1;UBERON:0004914,1.30e-19,1;UBERON:0000478,7.60e-19,24;UBERON:0000058,1.29e-15,19;UBERON:0002394,4.01e-13,6;UBERON:0003928,4.01e-13,6;UBERON:0007499,7.16e-12,25;UBERON:0009856,1.99e-11,26;UBERON:0000305,3.85e-11,7;UBERON:0004903,3.58e-10,2;UBERON:0002173,3.58e-10,2;UBERON:0002186,3.58e-10,2;UBERON:0004871,7.26e-10,8;UBERON:0002294,4.61e-09,9;UBERON:0001173,4.61e-09,9;UBERON:0004912,4.61e-09,9;UBERON:0002114,2.05e-07,2;UBERON:0004923,6.76e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,5.58240934377942,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.286804595389004,0.121973706129595,0.265059536642971,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,1.18785872333055,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,1.70749867179921,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,2.23300811812344,1.28236630762607,2.66517388009317,0,0,0,0,0,0,0,0,0.210998064528027,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.721429382263803,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,0,0,0,0,0,0,0,2.66140955190681,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,5.58240934377942,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.286804595389004,0.121973706129595,0.265059536642971,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,1.18785872333055,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,1.70749867179921,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,2.23300811812344,1.28236630762607,2.66517388009317,0,0,0,0,0,0,0,0,0.210998064528027,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.721429382263803,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577628330751691,0,0,0,0,0,0,0,0,2.66140955190681,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.560659312903067,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@CST6 | |short_description=p10@CST6 | ||
}} | }} |
Latest revision as of 12:50, 19 September 2015
Short description: | p10@CST6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_CST6_5end |
Coexpression cluster: | C1349_Alveolar_bile_chorionic_clear_amniotic_papillotubular_serous |
Association with transcript: | -22bp_to_ENST00000312134_5end |
EntrezGene: | CST6 |
HGNC: | 2478 |
UniProt: | Q15828 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 8.69e-55 | 3 |
pneumocyte | 1.29e-24 | 3 |
extraembryonic cell | 9.48e-24 | 19 |
amnion mesenchymal stem cell | 3.35e-15 | 5 |
epithelial cell of tracheobronchial tree | 7.16e-09 | 9 |
epithelial cell of lower respiratory tract | 7.16e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 8.69e-55 | 3 |
extraembryonic membrane | 3.89e-32 | 14 |
membranous layer | 3.89e-32 | 14 |
pulmonary alveolus epithelium | 1.29e-24 | 3 |
alveolus | 1.29e-24 | 3 |
pulmonary lobule | 1.29e-24 | 3 |
lobule | 1.29e-24 | 3 |
alveolus of lung | 1.29e-24 | 3 |
alveolar system | 1.29e-24 | 3 |
pulmonary acinus | 1.29e-24 | 3 |
alveolar sac | 1.29e-24 | 3 |
alveolar wall | 1.29e-24 | 3 |
chorion | 5.66e-24 | 7 |
hepatopancreatic ampulla | 1.30e-19 | 1 |
extrahepatic bile duct | 1.30e-19 | 1 |
common bile duct | 1.30e-19 | 1 |
duodenal papilla | 1.30e-19 | 1 |
extraembryonic structure | 7.60e-19 | 24 |
duct | 1.29e-15 | 19 |
bile duct | 4.01e-13 | 6 |
digestive system duct | 4.01e-13 | 6 |
epithelial sac | 7.16e-12 | 25 |
sac | 1.99e-11 | 26 |
amnion | 3.85e-11 | 7 |
bronchoalveolar duct junction | 3.58e-10 | 2 |
alveolar duct | 3.58e-10 | 2 |
bronchiole | 3.58e-10 | 2 |
somatic layer of lateral plate mesoderm | 7.26e-10 | 8 |
biliary system | 4.61e-09 | 9 |
biliary tree | 4.61e-09 | 9 |
biliary bud | 4.61e-09 | 9 |
duodenum | 2.05e-07 | 2 |
organ component layer | 6.76e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.72e-10 | 2 |
lung adenocarcinoma | 3.58e-10 | 2 |