FFCP PHASE1:Hg19::chr14:24551143..24551178,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4901 | |EntrezGene=4901 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8002 | |HGNC=8002 | ||
|TSSclassifier=strong | |||
|UniProt=A8MX14 | |UniProt=A8MX14 | ||
|association_with_transcript=-6bp_to_ENST00000396995_5end | |association_with_transcript=-6bp_to_ENST00000396995_5end | ||
|cluster_id=chr14:24551143..24551178,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_6_at_NRL_5end | |description=CAGE_peak_6_at_NRL_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;2.46e-10;15!CL:0000125;2.46e-10;15!CL:0000095;2.36e-09;17!CL:0002319;7.24e-07;25 | |ontology_enrichment_celltype_v019=CL:0000243;2.46e-10;15!CL:0000125;2.46e-10;15!CL:0000095;2.36e-09;17!CL:0002319;7.24e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000243,2.46e-10,15;CL:0000125,2.46e-10,15;CL:0000030,2.46e-10,15;CL:0000339,2.46e-10,15;CL:0000095,2.36e-09,17;CL:0000123,2.36e-09,17;CL:0002319,7.24e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.19e-53;3!UBERON:0006238;2.17e-15;10!CL:0000339;2.46e-10;15 | |ontology_enrichment_development_v019=UBERON:0003056;2.19e-53;3!UBERON:0006238;2.17e-15;10!CL:0000339;2.46e-10;15 | ||
|ontology_enrichment_disease=DOID:154!2.31e-08!2;DOID:4236!2.31e-08!2 | |ontology_enrichment_disease=DOID:154!2.31e-08!2;DOID:4236!2.31e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3093;3.36e-14;11!DOID:5409;3.79e-11;4!DOID:1325;6.39e-07;7!DOID:3904;6.39e-07;7 | |ontology_enrichment_disease_v019=DOID:3093;3.36e-14;11!DOID:5409;3.79e-11;4!DOID:1325;6.39e-07;7!DOID:3904;6.39e-07;7 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,3.36e-14,11;DOID:5409,3.79e-11,4;DOID:1325,6.39e-07,7;DOID:3904,6.39e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002240!7.16e-20!3;UBERON:0001882!3.17e-15!1;UBERON:0005403!3.17e-15!1;UBERON:0000966!1.34e-12!5;UBERON:0005388!1.34e-12!5;UBERON:0001802!1.34e-12!5;UBERON:0005174!2.52e-12!5;UBERON:0001137!2.52e-12!5;UBERON:0000970!7.22e-12!20;UBERON:0002104!2.57e-11!21;UBERON:0000073!5.71e-11!94;UBERON:0001016!5.71e-11!94;UBERON:0000020!2.36e-10!23;UBERON:0001032!6.21e-10!24;UBERON:0004456!6.21e-10!24;UBERON:0003075!9.73e-10!86;UBERON:0007284!9.73e-10!86;UBERON:0005743!1.22e-09!86;UBERON:0002346!2.81e-09!90;UBERON:0003076!4.74e-09!15;UBERON:0003057!4.74e-09!15;UBERON:0001905!1.73e-08!2;UBERON:0002757!1.73e-08!2;UBERON:0010134!1.73e-08!2;UBERON:0002784!1.73e-08!2;UBERON:0005408!1.73e-08!2;UBERON:0001899!1.73e-08!2;UBERON:0001017!9.09e-08!82;UBERON:0000019!2.04e-07!19;UBERON:0000047!2.04e-07!19;UBERON:0004088!2.04e-07!19;UBERON:0003072!2.04e-07!19;UBERON:0003071!2.04e-07!19;UBERON:0004128!2.04e-07!19;UBERON:0004121!3.45e-07!169;UBERON:0000924!5.34e-07!173;UBERON:0006601!5.34e-07!173;UBERON:0001456!9.31e-07!21 | |ontology_enrichment_uberon=UBERON:0002240!7.16e-20!3;UBERON:0001882!3.17e-15!1;UBERON:0005403!3.17e-15!1;UBERON:0000966!1.34e-12!5;UBERON:0005388!1.34e-12!5;UBERON:0001802!1.34e-12!5;UBERON:0005174!2.52e-12!5;UBERON:0001137!2.52e-12!5;UBERON:0000970!7.22e-12!20;UBERON:0002104!2.57e-11!21;UBERON:0000073!5.71e-11!94;UBERON:0001016!5.71e-11!94;UBERON:0000020!2.36e-10!23;UBERON:0001032!6.21e-10!24;UBERON:0004456!6.21e-10!24;UBERON:0003075!9.73e-10!86;UBERON:0007284!9.73e-10!86;UBERON:0005743!1.22e-09!86;UBERON:0002346!2.81e-09!90;UBERON:0003076!4.74e-09!15;UBERON:0003057!4.74e-09!15;UBERON:0001905!1.73e-08!2;UBERON:0002757!1.73e-08!2;UBERON:0010134!1.73e-08!2;UBERON:0002784!1.73e-08!2;UBERON:0005408!1.73e-08!2;UBERON:0001899!1.73e-08!2;UBERON:0001017!9.09e-08!82;UBERON:0000019!2.04e-07!19;UBERON:0000047!2.04e-07!19;UBERON:0004088!2.04e-07!19;UBERON:0003072!2.04e-07!19;UBERON:0003071!2.04e-07!19;UBERON:0004128!2.04e-07!19;UBERON:0004121!3.45e-07!169;UBERON:0000924!5.34e-07!173;UBERON:0006601!5.34e-07!173;UBERON:0001456!9.31e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.44e-32;5!UBERON:0005388;1.44e-32;5!UBERON:0001802;1.44e-32;5!UBERON:0000970;1.12e-18;20!UBERON:0002104;7.83e-18;21!UBERON:0000020;2.31e-16;23!UBERON:0001032;1.02e-15;24!UBERON:0004456;1.02e-15;24!UBERON:0000019;2.17e-09;19!UBERON:0000047;2.17e-09;19!UBERON:0004088;2.17e-09;19!UBERON:0010230;2.17e-09;19!UBERON:0001456;1.37e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.44e-32;5!UBERON:0005388;1.44e-32;5!UBERON:0001802;1.44e-32;5!UBERON:0000970;1.12e-18;20!UBERON:0002104;7.83e-18;21!UBERON:0000020;2.31e-16;23!UBERON:0001032;1.02e-15;24!UBERON:0004456;1.02e-15;24!UBERON:0000019;2.17e-09;19!UBERON:0000047;2.17e-09;19!UBERON:0004088;2.17e-09;19!UBERON:0010230;2.17e-09;19!UBERON:0001456;1.37e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.38e-27,6;UBERON:0005388,2.38e-27,6;UBERON:0001802,2.38e-27,6;UBERON:0000970,7.83e-18,21;UBERON:0002104,7.83e-18,21;UBERON:0000020,1.02e-15,24;UBERON:0001032,1.02e-15,24;UBERON:0004456,1.02e-15,24;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0001456,3.04e-08,22 | |||
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|short_description=p6@NRL | |short_description=p6@NRL | ||
}} | }} |
Latest revision as of 12:59, 19 September 2015
Short description: | p6@NRL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_NRL_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -6bp_to_ENST00000396995_5end |
EntrezGene: | NRL |
HGNC: | 8002 |
UniProt: | A8MX14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 2.46e-10 | 15 |
glial cell | 2.46e-10 | 15 |
glioblast | 2.46e-10 | 15 |
glioblast (sensu Vertebrata) | 2.46e-10 | 15 |
neuron associated cell | 2.36e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.36e-09 | 17 |
neural cell | 7.24e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
retina | 2.38e-27 | 6 |
photoreceptor array | 2.38e-27 | 6 |
posterior segment of eyeball | 2.38e-27 | 6 |
eye | 7.83e-18 | 21 |
visual system | 7.83e-18 | 21 |
sense organ | 1.02e-15 | 24 |
sensory system | 1.02e-15 | 24 |
entire sense organ system | 1.02e-15 | 24 |
camera-type eye | 5.70e-09 | 20 |
simple eye | 5.70e-09 | 20 |
immature eye | 5.70e-09 | 20 |
ocular region | 5.70e-09 | 20 |
eyeball of camera-type eye | 5.70e-09 | 20 |
optic cup | 5.70e-09 | 20 |
optic vesicle | 5.70e-09 | 20 |
eye primordium | 5.70e-09 | 20 |
face | 3.04e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.36e-14 | 11 |
lung small cell carcinoma | 3.79e-11 | 4 |
bronchus cancer | 6.39e-07 | 7 |
bronchogenic carcinoma | 6.39e-07 | 7 |