FFCP PHASE1:Hg19::chr18:47087321..47087336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9388 | |EntrezGene=9388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6623 | |HGNC=6623 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=252bp_to_AK125344_5end | |association_with_transcript=252bp_to_AK125344_5end | ||
|cluster_id=chr18:47087321..47087336,+ | |||
|coexpression_cluster_id=C113 | |coexpression_cluster_id=C113 | ||
|description=CAGE_peak_5_at_LIPG_5end | |description=CAGE_peak_5_at_LIPG_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;3.18e-11;2!CL:0002592;6.56e-08;3 | |ontology_enrichment_celltype_v019=CL:0000047;3.18e-11;2!CL:0002592;6.56e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002592,5.54e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.66e-21;1!UBERON:0007123;5.67e-17;5!UBERON:0003056;6.56e-08;3 | |ontology_enrichment_development_v019=UBERON:0005425;4.66e-21;1!UBERON:0007123;5.67e-17;5!UBERON:0003056;6.56e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!6.63e-10!309;UBERON:0000119!1.13e-09!312;UBERON:0000025!5.25e-08!194;UBERON:0004111!1.35e-07!241;UBERON:0000489!1.79e-07!32;UBERON:0000922!3.99e-07!612;UBERON:0000477!4.28e-07!286;UBERON:0003103!9.91e-07!69 | |ontology_enrichment_uberon=UBERON:0000483!6.63e-10!309;UBERON:0000119!1.13e-09!312;UBERON:0000025!5.25e-08!194;UBERON:0004111!1.35e-07!241;UBERON:0000489!1.79e-07!32;UBERON:0000922!3.99e-07!612;UBERON:0000477!4.28e-07!286;UBERON:0003103!9.91e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0000341;1.21e-40;2!UBERON:0000941;4.66e-21;1!UBERON:0001785;4.66e-21;1!UBERON:0002464;4.66e-21;1!UBERON:0004904;4.66e-21;1!UBERON:0001021;4.66e-21;1!UBERON:0002046;5.67e-17;5!UBERON:0000974;2.75e-14;6!UBERON:0003714;3.18e-11;2!UBERON:0005162;3.18e-11;2!UBERON:0000122;3.18e-11;2!UBERON:0003498;6.56e-08;3!UBERON:0005985;6.56e-08;3!UBERON:0001621;6.56e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0000341;1.21e-40;2!UBERON:0000941;4.66e-21;1!UBERON:0001785;4.66e-21;1!UBERON:0002464;4.66e-21;1!UBERON:0004904;4.66e-21;1!UBERON:0001021;4.66e-21;1!UBERON:0002046;5.67e-17;5!UBERON:0000974;2.75e-14;6!UBERON:0003714;3.18e-11;2!UBERON:0005162;3.18e-11;2!UBERON:0000122;3.18e-11;2!UBERON:0003498;6.56e-08;3!UBERON:0005985;6.56e-08;3!UBERON:0001621;6.56e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,1.64e-40,2;UBERON:0000941,4.22e-21,1;UBERON:0001785,4.22e-21,1;UBERON:0002464,4.22e-21,1;UBERON:0004904,4.22e-21,1;UBERON:0001021,4.22e-21,1;UBERON:0003902,4.22e-21,1;UBERON:0005425,4.22e-21,1;UBERON:0002046,4.28e-17,5;UBERON:0004117,4.28e-17,5;UBERON:0007689,4.28e-17,5;UBERON:0007123,4.28e-17,5;UBERON:0003091,4.28e-17,5;UBERON:0003714,3.02e-11,2;UBERON:0005162,3.02e-11,2;UBERON:0000122,3.02e-11,2;UBERON:0000974,6.28e-09,10;UBERON:0009722,2.72e-08,11;UBERON:0007690,2.72e-08,11;UBERON:0001621,5.54e-08,3 | |||
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| ||
|short_description=p5@LIPG | |short_description=p5@LIPG | ||
}} | }} |
Latest revision as of 17:42, 19 September 2015
Short description: | p5@LIPG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LIPG_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 252bp_to_AK125344_5end |
EntrezGene: | LIPG |
HGNC: | 6623 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the coronary artery | 5.54e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
throat | 1.64e-40 | 2 |
cranial nerve II | 4.22e-21 | 1 |
cranial nerve | 4.22e-21 | 1 |
nerve trunk | 4.22e-21 | 1 |
nerve connecting eye with brain | 4.22e-21 | 1 |
nerve | 4.22e-21 | 1 |
retinal neural layer | 4.22e-21 | 1 |
presumptive neural retina | 4.22e-21 | 1 |
thyroid gland | 4.28e-17 | 5 |
pharyngeal pouch | 4.28e-17 | 5 |
thyroid diverticulum | 4.28e-17 | 5 |
pharyngeal pouch 2 | 4.28e-17 | 5 |
thyroid primordium | 4.28e-17 | 5 |
neural tissue | 3.02e-11 | 2 |
multi cell component structure | 3.02e-11 | 2 |
neuron projection bundle | 3.02e-11 | 2 |
neck | 6.28e-09 | 10 |
entire pharyngeal arch endoderm | 2.72e-08 | 11 |
early pharyngeal endoderm | 2.72e-08 | 11 |
coronary artery | 5.54e-08 | 3 |