FFCP PHASE1:Hg19::chr22:31460092..31460140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6525 | |EntrezGene=6525 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11126 | |HGNC=11126 | ||
|TSSclassifier=strong | |||
|UniProt=C9JGQ0 | |UniProt=C9JGQ0 | ||
|association_with_transcript=0bp_to_ENST00000422839_5end | |association_with_transcript=0bp_to_ENST00000422839_5end | ||
|cluster_id=chr22:31460092..31460140,+ | |||
|description=CAGE_peak_4_at_SMTN_5end | |description=CAGE_peak_4_at_SMTN_5end | ||
|id=chr22:31460092..31460140,+ | |id=chr22:31460092..31460140,+ | ||
|ontology_enrichment_celltype=CL:0000945;1.79e-12;24!CL:0002178;6.34e-07;3 | |ontology_enrichment_celltype=CL:0000945!2.36e-07!24;CL:0000826!2.36e-07!24 | ||
| | |ontology_enrichment_celltype_v019=CL:0000945;1.79e-12;24!CL:0002178;6.34e-07;3 | ||
|ontology_enrichment_disease=DOID:2531;3.89e-17;51!DOID:0060083;3.89e-17;51!DOID:1240;1.45e-14;39!DOID:8692;9.96e-13;31!DOID:3119;1.45e-10;14!DOID:0060058;8.54e-10;10!DOID:299;3.49e-09;25!DOID:1036;3.96e-09;8!DOID:0050686;1.12e-07;137 | |ontology_enrichment_celltype_v019_2=CL:0000945,1.98e-12,24;CL:0000826,1.98e-12,24;CL:0000838,2.41e-08,52;CL:0000542,4.23e-08,53;CL:0000051,4.23e-08,53;CL:0000223,5.77e-08,58;CL:0002178,6.48e-07,3;CL:0000817,8.38e-07,3 | ||
|ontology_enrichment_uberon=UBERON:0005409;1.21e-09;22!UBERON:0000160;4.64e-07;17 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!4.78e-46!235;DOID:14566!7.29e-44!239;DOID:0050686!1.89e-26!137;DOID:0050687!1.48e-22!143;DOID:2531!2.44e-21!51;DOID:0060083!2.44e-21!51;DOID:305!2.48e-17!106;DOID:1240!8.61e-16!39;DOID:8692!3.72e-11!31;DOID:0060058!3.39e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:2531;3.89e-17;51!DOID:0060083;3.89e-17;51!DOID:1240;1.45e-14;39!DOID:8692;9.96e-13;31!DOID:3119;1.45e-10;14!DOID:0060058;8.54e-10;10!DOID:299;3.49e-09;25!DOID:1036;3.96e-09;8!DOID:0050686;1.12e-07;137 | |||
|ontology_enrichment_disease_v019_2=DOID:162,7.25e-40,235;DOID:14566,1.42e-38,239;DOID:2531,1.17e-27,51;DOID:0060083,1.17e-27,51;DOID:0050686,3.26e-27,137;DOID:1240,4.58e-19,39;DOID:0050687,5.88e-16,143;DOID:305,4.30e-13,106;DOID:8692,5.74e-13,31;DOID:3119,1.40e-10,14;DOID:0060058,8.91e-10,10;DOID:299,3.63e-09,25;DOID:1036,4.00e-09,8 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.58e-08!35;UBERON:0000160!3.83e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.21e-09;22!UBERON:0000160;4.64e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.02e-09,25;UBERON:0000160,4.78e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0,2.90370941842215,2.46301768349837,2.36132343941038,0,0,0,0,0,0.369754010166788,15.8807761189618,5.11809236954717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,1.17447437874188,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.523916301990851,0.364295288292542,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.937285727335186,0,0,0,0,0,0,0,0.245668634623536,0.103325781175765,0,0,0.910161361938026,0,0.505008341862199,0.125118519871964,0,0,0,0,0,0.538168907066586,0,0,0,0,0,0,0,0,0,0,0,0,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0.397589304964456,0.232387885739037,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0.441463099414651,13.4057398011994,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.672786506072164,0.43596006883328,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0.410952645100767,0.537182889719687,7.84596007954691,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.553107505625109,0,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,22.2381387248585,0,0,0.229628896329213,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0.541892875087706,0,0,0,0.223874754722178,0.219259876645935,0,0,0,0,0,0.54941678891006,0.660075999364704,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0.845086807596724,0.143411352204052,0,0.35667105148125,0,0,0,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,0,0.490080431962063,0.371606350251437,4.47234560226979,2.41882267384608,1.4348364545594,0.199579371432817,0,10.3720055534703,0.324621940274555,0.561594356226918,0,4.7003968731907,0,1.86220955581764,0,0,5.53600108997424,6.87010689511529,0.614481528616916,0,0.333698283423817,5.27547857585509,9.46580991243824,3.69262196843137,25.1523780982664,0.66614393599564,1.4098700508785,7.48562161632879,0,0,6.57515967237122,3.40963376167696,0,0,0,0,0,0.556543525114529,0.824019371133798,0.211125408127993,0,0.276283915531148,0.503865495708552,1.32949287252801,2.21552649829925,0,0.0898683511473268,17.5440751182097,6.13886844272246,0,0,0,0,0,0,0.260427761085233,0,0,6.14484620741698,14.2382044163949,0.709163045303809,0,0.291604613383254,0.173624994933292,0,0.120596438625408,0,0,0.295547618953547,0,4.03072315020264,0.278847488557207,0,0.113942055847001,1.38338342632836,5.02642808694724,0.108647371922008,0,0,0,3.06579894587209,0,0.831058409500782,6.31667849728106,8.4306889756628,8.22325776181629,11.0057164980027,0.635746315921515,0,0.163232808159148,7.6330658574328,23.1535844524037,0.995261931078505,1.68069372556344,0.611030144933625,0.296521128680622,0.370691816839509,0.417687798021821,0,0,0,10.5823777745086,0.391329237864179,0,0,0,0.61214552326098,0,45.2473492437623,9.64300179994398,3.32326936353593,6.28884716163448,4.39506085770115,4.77889719091835,0,6.65638430463066,0.867798691675654,0,0.0870592065804026,0,0.343972064943233,0.290268993867255,0.365446585430928,0.246346371159628,0,0,0,2.05562886970126,6.16015296279268,0.0633107959558787,2.73771935828724,0.160317640503067,0.426905989478705,6.5937171162103,6.62815918908888,0,3.77508995296322,0.288109595976299,6.58538438496792,0,2.8539883275459,3.13808538937,0.407992870545287,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0,0,0,0,6.98975697164723,7.09048640765013,6.01635766182515,7.54919691166871,2.85439696392771,10.3301465120257,0,0.136203406111576,0.160753148465019,0.412618309791701,0.415440338029185,0,0,0,1.34173875039706,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,6.81367922219513,0,2.37955392192264,0,0,0.129282956361551,0,0.513260513652988,7.04815022316672,0,0,0.414239055347196,0,0.197611631897944,11.8138820429469,2.55336503108073,0,0,0,0,0.314108192500469,0,0,0.1251909307065,0,0.110929051536852,0.0620964029413835,0.691743174681154,0.124980407962107,0,0,2.11739237728355,0,0,0,0.233713309847224,0,0.189403005275089,0,0,0,0,0,0.147855149989634,0,0,0,0.414706207840855,0,0,0,0,0.406870733204662,0,0,0.464033759878494,0,0,0,0,0,0.963099152036517,0,1.56596575179127,0.680117776536817,0,1.71315693154527,0.3581776821629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| ||
|short_description=p4@SMTN | |short_description=p4@SMTN | ||
}} | }} |
Latest revision as of 19:12, 19 September 2015
Short description: | p4@SMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMTN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000422839_5end |
EntrezGene: | SMTN |
HGNC: | 11126 |
UniProt: | C9JGQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.98e-12 | 24 |
pro-B cell | 1.98e-12 | 24 |
lymphoid lineage restricted progenitor cell | 2.41e-08 | 52 |
lymphocyte | 4.23e-08 | 53 |
common lymphoid progenitor | 4.23e-08 | 53 |
endodermal cell | 5.77e-08 | 58 |
epithelial cell of stomach | 6.48e-07 | 3 |
precursor B cell | 8.38e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.02e-09 | 25 |
intestine | 4.78e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.25e-40 | 235 |
disease of cellular proliferation | 1.42e-38 | 239 |
hematologic cancer | 1.17e-27 | 51 |
immune system cancer | 1.17e-27 | 51 |
organ system cancer | 3.26e-27 | 137 |
leukemia | 4.58e-19 | 39 |
cell type cancer | 5.88e-16 | 143 |
carcinoma | 4.30e-13 | 106 |
myeloid leukemia | 5.74e-13 | 31 |
gastrointestinal system cancer | 1.40e-10 | 14 |
lymphoma | 8.91e-10 | 10 |
adenocarcinoma | 3.63e-09 | 25 |
chronic leukemia | 4.00e-09 | 8 |