FFCP PHASE1:Hg19::chr1:207007692..207007696,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29949 | |EntrezGene=29949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5990 | |HGNC=5990 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHD0 | |UniProt=Q9UHD0 | ||
|association_with_transcript=-4bp_to_AF192498_5end | |||
|cluster_id=chr1:207007692..207007696,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_IL19_5end | |||
|id=chr1:207007692..207007696,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.58e-23!42;CL:0000860!3.67e-21!45;CL:0002009!8.18e-15!65;CL:0002194!1.24e-13!63;CL:0000576!1.24e-13!63;CL:0000040!1.24e-13!63;CL:0000559!1.24e-13!63;CL:0000557!3.26e-13!71;CL:0000839!6.94e-12!70;CL:0000766!1.20e-10!76;CL:0000763!6.50e-07!112;CL:0000049!6.50e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.96e-18;33!CL:0002057;1.96e-18;33!CL:0000473;7.46e-13;39!CL:0000234;7.46e-13;39!CL:0000576;5.69e-09;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.45e-16,42;CL:0002057,3.45e-16,42;CL:0000473,4.16e-14,48;CL:0000234,4.16e-14,48;CL:0002194,3.46e-11,59;CL:0000576,3.46e-11,59;CL:0000040,3.46e-11,59;CL:0000559,3.46e-11,59;CL:0002009,8.26e-11,61;CL:0000839,5.79e-10,66;CL:0000557,8.26e-10,67;CL:0000766,4.22e-09,72 | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.54e-15;1!CL:0002057;3.82e-13;42!UBERON:0008814;1.86e-08;2!UBERON:0010056;1.86e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006562!4.38e-12!11;UBERON:0002371!2.89e-11!80;UBERON:0001474!3.39e-10!86;UBERON:0002390!3.78e-10!102;UBERON:0003061!3.78e-10!102;UBERON:0002193!5.88e-10!112;UBERON:0002405!1.43e-09!115;UBERON:0001042!2.05e-09!10;UBERON:0009145!2.05e-09!10;UBERON:0003127!2.45e-09!2;UBERON:0004765!3.40e-09!101;UBERON:0001434!3.40e-09!101;UBERON:0000341!1.93e-08!2;UBERON:0000166!2.96e-08!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;1.44e-29;2!UBERON:0001723;9.09e-20;3!UBERON:0001033;9.09e-20;3!UBERON:0001736;1.54e-15;1!UBERON:0001044;2.35e-10;6!UBERON:0003293;2.35e-10;6!UBERON:0003294;2.35e-10;6!UBERON:0010047;2.35e-10;6!UBERON:0003408;2.35e-10;6!UBERON:0000167;2.35e-10;6!UBERON:0003126;3.73e-09;7!UBERON:0001005;3.73e-09;7!UBERON:0001829;2.00e-08;2!UBERON:0000165;2.42e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.44e-29,2;UBERON:0001723,1.15e-19,3;UBERON:0001033,1.15e-19,3;UBERON:0010056,1.15e-19,3;UBERON:0001736,1.54e-15,1;UBERON:0006298,1.54e-15,1;UBERON:0000166,1.54e-10,22;UBERON:0001044,2.19e-10,6;UBERON:0003293,2.19e-10,6;UBERON:0003294,2.19e-10,6;UBERON:0010047,2.19e-10,6;UBERON:0000167,2.19e-10,6;UBERON:0003126,3.73e-09,7;UBERON:0001005,3.73e-09,7;UBERON:0002371,1.34e-08,76;UBERON:0001829,2.00e-08,2;UBERON:0000165,4.71e-08,29;UBERON:0000930,4.71e-08,29;UBERON:0001474,6.15e-08,82;UBERON:0004765,3.45e-07,90;UBERON:0002405,6.10e-07,93 | |||
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| ||
|short_description=p1@IL19 | |||
}} | }} |
Latest revision as of 05:58, 20 September 2015
Short description: | p1@IL19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IL19_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -4bp_to_AF192498_5end |
EntrezGene: | IL19 |
HGNC: | 5990 |
UniProt: | Q9UHD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.45e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.45e-16 | 42 |
defensive cell | 4.16e-14 | 48 |
phagocyte | 4.16e-14 | 48 |
monopoietic cell | 3.46e-11 | 59 |
monocyte | 3.46e-11 | 59 |
monoblast | 3.46e-11 | 59 |
promonocyte | 3.46e-11 | 59 |
macrophage dendritic cell progenitor | 8.26e-11 | 61 |
myeloid lineage restricted progenitor cell | 5.79e-10 | 66 |
granulocyte monocyte progenitor cell | 8.26e-10 | 67 |
myeloid leukocyte | 4.22e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.44e-29 | 2 |
tongue | 1.15e-19 | 3 |
gustatory system | 1.15e-19 | 3 |
future tongue | 1.15e-19 | 3 |
submandibular gland | 1.54e-15 | 1 |
submandibular gland primordium | 1.54e-15 | 1 |
oral opening | 1.54e-10 | 22 |
saliva-secreting gland | 2.19e-10 | 6 |
gland of oral region | 2.19e-10 | 6 |
gland of foregut | 2.19e-10 | 6 |
oral gland | 2.19e-10 | 6 |
oral cavity | 2.19e-10 | 6 |
trachea | 3.73e-09 | 7 |
respiratory airway | 3.73e-09 | 7 |
bone marrow | 1.34e-08 | 76 |
major salivary gland | 2.00e-08 | 2 |
mouth | 4.71e-08 | 29 |
stomodeum | 4.71e-08 | 29 |
bone element | 6.15e-08 | 82 |
skeletal element | 3.45e-07 | 90 |
immune system | 6.10e-07 | 93 |