FFCP PHASE1:Hg19::chrX:19766188..19766199,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:19766188..19766199,- to FFCP PHASE1:Hg19::chrX:19766188..19766199,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=30011 | |EntrezGene=30011 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13867 | |HGNC=13867 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JPT1 | |UniProt=Q5JPT1 | ||
|association_with_transcript=-367bp_to_ENST00000432234_5end | |||
|cluster_id=chrX:19766188..19766199,- | |||
|description=CAGE_peak_37_at_SH3KBP1_5end | |||
|id=chrX:19766188..19766199,- | |||
|ontology_enrichment_celltype=CL:0000988!2.05e-25!182;CL:0000738!3.08e-22!140;CL:0000037!1.10e-21!172;CL:0000566!1.10e-21!172;CL:0002032!2.00e-19!165;CL:0000837!2.00e-19!165;CL:0002031!4.92e-18!124;CL:0002087!2.76e-17!119;CL:0000945!4.23e-16!24;CL:0000826!4.23e-16!24;CL:0000838!6.56e-14!52;CL:0000542!1.35e-13!53;CL:0000051!1.35e-13!53;CL:0000080!1.32e-08!6;CL:0000766!2.24e-08!76;CL:0002057!2.72e-08!42;CL:0000763!7.22e-08!112;CL:0000049!7.22e-08!112;CL:0000784!1.06e-07!3;CL:0000860!1.22e-07!45;CL:0000134!4.70e-07!358;CL:0002320!8.52e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.44e-17;24!CL:0000081;5.06e-10;11!CL:0000775;1.10e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.45e-17,24;CL:0000826,5.45e-17,24;CL:0000081,5.54e-10,11;CL:0000775,1.19e-09,3;CL:0000838,4.46e-08,52;CL:0000542,6.24e-08,53;CL:0000051,6.24e-08,53;CL:0000988,8.50e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060058!1.20e-12!10;DOID:2531!5.07e-08!51;DOID:0060083!5.07e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:630;7.62e-26;1!DOID:0050177;7.62e-26;1!DOID:0050427;7.62e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.26e-25,1;DOID:0050177,1.26e-25,1;DOID:0050427,1.26e-25,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.01e-10!102;UBERON:0003061!2.01e-10!102;UBERON:0002193!3.52e-09!112;UBERON:0004177!7.17e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;7.67e-11;10!UBERON:0002106;1.53e-09;3!UBERON:0000178;1.54e-07;15!UBERON:0000179;1.54e-07;15!UBERON:0000463;1.54e-07;15!UBERON:0002390;2.73e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.06e-11,10;UBERON:0000358,8.06e-11,10;UBERON:0000307,8.06e-11,10;UBERON:0000091,8.06e-11,10;UBERON:0000087,8.06e-11,10;UBERON:0007010,8.06e-11,10;UBERON:0007806,8.06e-11,10;UBERON:0008780,8.06e-11,10;UBERON:0005728,8.06e-11,10;UBERON:0002106,1.30e-09,3;UBERON:0004854,1.30e-09,3;UBERON:0009034,1.30e-09,3;UBERON:0002095,1.30e-09,3;UBERON:0004782,1.30e-09,3;UBERON:0003281,1.30e-09,3;UBERON:0009664,1.30e-09,3;UBERON:0002296,1.30e-09,3;UBERON:0005602,1.30e-09,3;UBERON:0001179,1.30e-09,3;UBERON:0006293,1.30e-09,3;UBERON:0000178,1.59e-07,15;UBERON:0000179,1.59e-07,15;UBERON:0000463,1.59e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,2.54511827294832,2.12519109546934,0,0,0.154816123316076,0,0,0,0.232401601740905,0.284338464974843,0,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640276590135727,0.159426272728822,0.199579371432817,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.861593638227486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.86494757262552,1.67075119208729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,2.54511827294832,2.12519109546934,0,0,0.154816123316076,0,0,0,0.232401601740905,0.284338464974843,0,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640276590135727,0.159426272728822,0.199579371432817,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.861593638227486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48260564340311,0.86494757262552,1.67075119208729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | ||
|short_description=p37@SH3KBP1 | |||
}} | }} |
Latest revision as of 08:05, 20 September 2015
Short description: | p37@SH3KBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_37_at_SH3KBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -367bp_to_ENST00000432234_5end |
EntrezGene: | SH3KBP1 |
HGNC: | 13867 |
UniProt: | Q5JPT1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.45e-17 | 24 |
pro-B cell | 5.45e-17 | 24 |
blood cell | 5.54e-10 | 11 |
neutrophil | 1.19e-09 | 3 |
lymphoid lineage restricted progenitor cell | 4.46e-08 | 52 |
lymphocyte | 6.24e-08 | 53 |
common lymphoid progenitor | 6.24e-08 | 53 |
hematopoietic cell | 8.50e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 8.06e-11 | 10 |
blastocyst | 8.06e-11 | 10 |
blastula | 8.06e-11 | 10 |
bilaminar disc | 8.06e-11 | 10 |
inner cell mass | 8.06e-11 | 10 |
cleaving embryo | 8.06e-11 | 10 |
connecting stalk | 8.06e-11 | 10 |
inner cell mass derived epiblast | 8.06e-11 | 10 |
extraembryonic mesoderm | 8.06e-11 | 10 |
spleen | 1.30e-09 | 3 |
gastrointestinal system mesentery | 1.30e-09 | 3 |
stomach region | 1.30e-09 | 3 |
mesentery | 1.30e-09 | 3 |
gastrointestinal system serosa | 1.30e-09 | 3 |
mesentery of stomach | 1.30e-09 | 3 |
gut mesentery | 1.30e-09 | 3 |
dorsal mesentery | 1.30e-09 | 3 |
dorsal mesogastrium | 1.30e-09 | 3 |
peritoneal cavity | 1.30e-09 | 3 |
spleen primordium | 1.30e-09 | 3 |
blood | 1.59e-07 | 15 |
haemolymphatic fluid | 1.59e-07 | 15 |
organism substance | 1.59e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.26e-25 | 1 |
monogenic disease | 1.26e-25 | 1 |
xeroderma pigmentosum | 1.26e-25 | 1 |