FFCP PHASE1:Hg19::chr6:1312325..1312340,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=94234 | |EntrezGene=94234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=20951 | |HGNC=20951 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q9C009 | |UniProt=Q9C009 | ||
|association_with_transcript=-334bp_to_ENST00000296839,NM_033260,uc003mtl.3_5end | |association_with_transcript=-334bp_to_ENST00000296839,NM_033260,uc003mtl.3_5end | ||
|cluster_id=chr6:1312325..1312340,+ | |||
|description=CAGE_peak_1_at_FOXQ1_5end | |description=CAGE_peak_1_at_FOXQ1_5end | ||
|id=chr6:1312325..1312340,+ | |id=chr6:1312325..1312340,+ | ||
Latest revision as of 17:52, 24 September 2015
| Short description: | p1@FOXQ1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_FOXQ1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -334bp_to_ENST00000296839, NM_033260, uc003mtl.3_5end |
| EntrezGene: | FOXQ1 |
| HGNC: | 20951 |
| UniProt: | Q9C009 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@FOXQ1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endodermal cell | 9.06e-15 | 58 |
| endo-epithelial cell | 8.86e-14 | 42 |
| epithelial cell | 3.74e-13 | 253 |
| epithelial cell of alimentary canal | 8.18e-10 | 20 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 1.03e-28 | 160 |
| endoderm | 1.03e-28 | 160 |
| presumptive endoderm | 1.03e-28 | 160 |
| digestive system | 3.88e-27 | 145 |
| digestive tract | 3.88e-27 | 145 |
| primitive gut | 3.88e-27 | 145 |
| organ system subdivision | 1.08e-23 | 223 |
| subdivision of digestive tract | 4.76e-20 | 118 |
| respiratory system | 1.30e-16 | 74 |
| foregut | 1.40e-15 | 87 |
Showing 1 to 10 of 50 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 3.49e-14 | 106 |
| cell type cancer | 1.42e-07 | 143 |
| squamous cell carcinoma | 2.51e-07 | 14 |
Showing 1 to 3 of 3 entries
