FFCP PHASE1:Hg19::chr22:39639932..39639953,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5155 | |EntrezGene=5155 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8800 | |HGNC=8800 | ||
|TSSclassifier=strong | |||
|UniProt=P01127 | |UniProt=P01127 | ||
|association_with_transcript=14bp_to_CR541807_5end | |association_with_transcript=14bp_to_CR541807_5end | ||
|cluster_id=chr22:39639932..39639953,- | |||
|description=CAGE_peak_3_at_PDGFB_5end | |description=CAGE_peak_3_at_PDGFB_5end | ||
|id=chr22:39639932..39639953,- | |id=chr22:39639932..39639953,- | ||
|ontology_enrichment_celltype=CL:0000066!2.00e-44!254;CL:0000076!9.69e-17!62;CL:0000223!5.46e-11!59;CL:0002139!9.46e-11!24;CL:0002076!3.61e-10!43;CL:0002078!5.96e-10!44;CL:0000213!1.25e-09!57;CL:0000215!1.25e-09!57;CL:0000115!2.96e-09!35;CL:1000449!1.98e-08!16;CL:0000071!3.10e-08!18;CL:0002546!3.10e-08!18;CL:1000497!6.22e-08!18;CL:0002518!6.22e-08!18;CL:1000507!9.82e-08!12;CL:1000494!9.82e-08!12;CL:0002321!2.94e-07!248;CL:0000220!3.95e-07!246 | |ontology_enrichment_celltype=CL:0000066!2.00e-44!254;CL:0000076!9.69e-17!62;CL:0000223!5.46e-11!59;CL:0002139!9.46e-11!24;CL:0002076!3.61e-10!43;CL:0002078!5.96e-10!44;CL:0000213!1.25e-09!57;CL:0000215!1.25e-09!57;CL:0000115!2.96e-09!35;CL:1000449!1.98e-08!16;CL:0000071!3.10e-08!18;CL:0002546!3.10e-08!18;CL:1000497!6.22e-08!18;CL:0002518!6.22e-08!18;CL:1000507!9.82e-08!12;CL:1000494!9.82e-08!12;CL:0002321!2.94e-07!248;CL:0000220!3.95e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.14e-17;10!CL:1000494;1.14e-17;10!CL:1000449;3.52e-16;15!CL:1000497;7.30e-14;17!CL:0002518;7.30e-14;17!CL:0002681;5.75e-12;12!CL:0002584;5.75e-12;12!CL:0000349;6.65e-08;19!CL:0002076;3.10e-07;42!CL:0000076;8.30e-07;63!CL:0002577;8.40e-07;3!CL:0000239;9.83e-07;3!CL:1000615;9.83e-07;3!CL:0002306;9.83e-07;3 | |ontology_enrichment_celltype_v019=CL:1000507;1.14e-17;10!CL:1000494;1.14e-17;10!CL:1000449;3.52e-16;15!CL:1000497;7.30e-14;17!CL:0002518;7.30e-14;17!CL:0002681;5.75e-12;12!CL:0002584;5.75e-12;12!CL:0000349;6.65e-08;19!CL:0002076;3.10e-07;42!CL:0000076;8.30e-07;63!CL:0002577;8.40e-07;3!CL:0000239;9.83e-07;3!CL:1000615;9.83e-07;3!CL:0002306;9.83e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.32e-33,253;CL:1000507,6.85e-18,10;CL:1000494,6.85e-18,10;CL:1000449,2.54e-16,15;CL:1000497,5.50e-14,17;CL:0002518,5.50e-14,17;CL:0000076,3.14e-13,63;CL:0002681,6.02e-12,12;CL:0002584,6.02e-12,12;CL:0002321,1.48e-09,250;CL:0002076,1.95e-09,42;CL:0000223,6.20e-08,58;CL:0000349,7.97e-08,19;CL:0002078,7.94e-07,45;CL:0002577,9.19e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!4.98e-11!106;DOID:0050687!1.51e-08!143 | |ontology_enrichment_disease=DOID:305!4.98e-11!106;DOID:0050687!1.51e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.66e-09!169;UBERON:0000925!5.66e-09!169;UBERON:0006595!5.66e-09!169;UBERON:0000064!6.03e-09!219;UBERON:0000080!1.61e-08!18;UBERON:0002120!1.61e-08!18;UBERON:0004875!1.61e-08!18;UBERON:0005721!1.61e-08!18;UBERON:0005754!1.61e-08!18;UBERON:0007297!1.61e-08!18;UBERON:0004111!1.82e-08!241;UBERON:0006555!1.98e-08!17;UBERON:0005103!1.98e-08!17;UBERON:0000083!1.98e-08!17;UBERON:0009201!1.98e-08!17;UBERON:0004819!1.98e-08!17;UBERON:0006553!1.98e-08!17;UBERON:0003074!1.98e-08!17;UBERON:0003060!1.98e-08!17;UBERON:0004211!1.98e-08!16;UBERON:0001285!1.98e-08!16;UBERON:0007684!1.98e-08!16;UBERON:0003220!1.98e-08!16;UBERON:0004208!1.98e-08!16;UBERON:0001008!2.14e-08!45;UBERON:0000477!2.25e-08!286;UBERON:0000489!2.74e-08!32;UBERON:0005631!2.95e-08!14;UBERON:0000158!2.95e-08!14;UBERON:0001986!3.10e-08!18;UBERON:0004638!3.10e-08!18;UBERON:0004852!3.10e-08!18;UBERON:0006554!3.89e-08!44;UBERON:0000487!4.87e-08!22;UBERON:0009773!9.82e-08!12;UBERON:0001231!9.82e-08!12;UBERON:0004810!9.82e-08!12;UBERON:0002113!1.07e-07!27;UBERON:0003918!1.07e-07!27;UBERON:0005095!1.07e-07!27;UBERON:0007687!1.07e-07!27;UBERON:0005177!2.68e-07!107;UBERON:0000058!2.92e-07!26;UBERON:0003887!5.17e-07!21;UBERON:0004876!5.67e-07!20;UBERON:0000119!8.30e-07!312 | |ontology_enrichment_uberon=UBERON:0004119!5.66e-09!169;UBERON:0000925!5.66e-09!169;UBERON:0006595!5.66e-09!169;UBERON:0000064!6.03e-09!219;UBERON:0000080!1.61e-08!18;UBERON:0002120!1.61e-08!18;UBERON:0004875!1.61e-08!18;UBERON:0005721!1.61e-08!18;UBERON:0005754!1.61e-08!18;UBERON:0007297!1.61e-08!18;UBERON:0004111!1.82e-08!241;UBERON:0006555!1.98e-08!17;UBERON:0005103!1.98e-08!17;UBERON:0000083!1.98e-08!17;UBERON:0009201!1.98e-08!17;UBERON:0004819!1.98e-08!17;UBERON:0006553!1.98e-08!17;UBERON:0003074!1.98e-08!17;UBERON:0003060!1.98e-08!17;UBERON:0004211!1.98e-08!16;UBERON:0001285!1.98e-08!16;UBERON:0007684!1.98e-08!16;UBERON:0003220!1.98e-08!16;UBERON:0004208!1.98e-08!16;UBERON:0001008!2.14e-08!45;UBERON:0000477!2.25e-08!286;UBERON:0000489!2.74e-08!32;UBERON:0005631!2.95e-08!14;UBERON:0000158!2.95e-08!14;UBERON:0001986!3.10e-08!18;UBERON:0004638!3.10e-08!18;UBERON:0004852!3.10e-08!18;UBERON:0006554!3.89e-08!44;UBERON:0000487!4.87e-08!22;UBERON:0009773!9.82e-08!12;UBERON:0001231!9.82e-08!12;UBERON:0004810!9.82e-08!12;UBERON:0002113!1.07e-07!27;UBERON:0003918!1.07e-07!27;UBERON:0005095!1.07e-07!27;UBERON:0007687!1.07e-07!27;UBERON:0005177!2.68e-07!107;UBERON:0000058!2.92e-07!26;UBERON:0003887!5.17e-07!21;UBERON:0004876!5.67e-07!20;UBERON:0000119!8.30e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.14e-17;10!UBERON:0009773;1.14e-17;10!UBERON:0001231;1.14e-17;10!UBERON:0004810;1.14e-17;10!UBERON:0006555;3.52e-16;15!UBERON:0004819;3.52e-16;15!UBERON:0001285;3.52e-16;15!UBERON:0007684;3.52e-16;15!UBERON:0006554;9.11e-14;30!UBERON:0001008;9.11e-14;30!UBERON:0001225;5.75e-12;12!UBERON:0008987;5.75e-12;12!UBERON:0002113;6.65e-12;24!UBERON:0011143;6.65e-12;24!UBERON:0001851;5.23e-11;15!UBERON:0000489;3.51e-09;29!UBERON:0000353;4.11e-09;15!UBERON:0005631;3.90e-08;10!UBERON:0000158;3.90e-08;10!UBERON:0001987;6.25e-08;4!UBERON:0000478;6.46e-07;24!UBERON:0006853;9.83e-07;3!UBERON:0007685;9.83e-07;3!UBERON:0004134;9.83e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0004211;1.14e-17;10!UBERON:0009773;1.14e-17;10!UBERON:0001231;1.14e-17;10!UBERON:0004810;1.14e-17;10!UBERON:0006555;3.52e-16;15!UBERON:0004819;3.52e-16;15!UBERON:0001285;3.52e-16;15!UBERON:0007684;3.52e-16;15!UBERON:0006554;9.11e-14;30!UBERON:0001008;9.11e-14;30!UBERON:0001225;5.75e-12;12!UBERON:0008987;5.75e-12;12!UBERON:0002113;6.65e-12;24!UBERON:0011143;6.65e-12;24!UBERON:0001851;5.23e-11;15!UBERON:0000489;3.51e-09;29!UBERON:0000353;4.11e-09;15!UBERON:0005631;3.90e-08;10!UBERON:0000158;3.90e-08;10!UBERON:0001987;6.25e-08;4!UBERON:0000478;6.46e-07;24!UBERON:0006853;9.83e-07;3!UBERON:0007685;9.83e-07;3!UBERON:0004134;9.83e-07;3 | ||
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| ||
|short_description=p3@PDGFB | |short_description=p3@PDGFB | ||
}} | }} |
Latest revision as of 18:14, 24 September 2015
Short description: | p3@PDGFB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDGFB_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_CR541807_5end |
EntrezGene: | PDGFB |
HGNC: | 8800 |
UniProt: | P01127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.32e-33 | 253 |
kidney tubule cell | 6.85e-18 | 10 |
nephron tubule epithelial cell | 6.85e-18 | 10 |
epithelial cell of nephron | 2.54e-16 | 15 |
kidney cell | 5.50e-14 | 17 |
kidney epithelial cell | 5.50e-14 | 17 |
squamous epithelial cell | 3.14e-13 | 63 |
kidney cortical cell | 6.02e-12 | 12 |
renal cortical epithelial cell | 6.02e-12 | 12 |
embryonic cell | 1.48e-09 | 250 |
endo-epithelial cell | 1.95e-09 | 42 |
endodermal cell | 6.20e-08 | 58 |
extraembryonic cell | 7.97e-08 | 19 |
meso-epithelial cell | 7.94e-07 | 45 |
placental epithelial cell | 9.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 6.85e-18 | 10 |
nephron epithelium | 2.54e-16 | 15 |
renal tubule | 2.54e-16 | 15 |
nephron tubule | 2.54e-16 | 15 |
nephron | 2.54e-16 | 15 |
uriniferous tubule | 2.54e-16 | 15 |
nephrogenic mesenchyme | 2.54e-16 | 15 |
excretory tube | 4.44e-15 | 16 |
kidney epithelium | 4.44e-15 | 16 |
urinary system structure | 2.22e-14 | 47 |
renal system | 6.19e-14 | 48 |
extraembryonic membrane | 8.50e-14 | 14 |
membranous layer | 8.50e-14 | 14 |
cortex of kidney | 6.02e-12 | 12 |
renal parenchyma | 6.02e-12 | 12 |
cortex | 5.33e-11 | 15 |
kidney | 1.28e-10 | 26 |
kidney mesenchyme | 1.28e-10 | 26 |
upper urinary tract | 1.28e-10 | 26 |
kidney rudiment | 1.28e-10 | 26 |
kidney field | 1.28e-10 | 26 |
chorion | 2.26e-09 | 7 |
parenchyma | 4.25e-09 | 15 |
cavitated compound organ | 2.70e-08 | 31 |
placenta | 5.73e-08 | 4 |
allantois | 5.73e-08 | 4 |
extraembryonic structure | 7.02e-07 | 24 |