FFCP PHASE1:Hg19::chr22:39640974..39640994,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5155 | |EntrezGene=5155 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8800 | |HGNC=8800 | ||
|TSSclassifier=strong | |||
|UniProt=P01127 | |UniProt=P01127 | ||
|association_with_transcript=-17bp_to_NM_002608,uc003axf.2_5end | |association_with_transcript=-17bp_to_NM_002608,uc003axf.2_5end | ||
|cluster_id=chr22:39640974..39640994,- | |||
|coexpression_cluster_id=C140 | |coexpression_cluster_id=C140 | ||
|description=CAGE_peak_1_at_PDGFB_5end | |description=CAGE_peak_1_at_PDGFB_5end | ||
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|ontology_enrichment_celltype=CL:0000115!1.03e-19!35;CL:0002078!7.44e-19!44;CL:0000213!6.51e-18!57;CL:0000215!6.51e-18!57;CL:0002139!4.34e-17!24;CL:0000066!3.18e-14!254;CL:0000071!4.91e-13!18;CL:0002546!4.91e-13!18;CL:1000497!5.66e-10!18;CL:0002518!5.66e-10!18;CL:1000449!5.01e-09!16;CL:0000076!7.79e-09!62;CL:1000413!2.16e-07!9;CL:0002681!3.38e-07!13;CL:0002584!3.38e-07!13 | |ontology_enrichment_celltype=CL:0000115!1.03e-19!35;CL:0002078!7.44e-19!44;CL:0000213!6.51e-18!57;CL:0000215!6.51e-18!57;CL:0002139!4.34e-17!24;CL:0000066!3.18e-14!254;CL:0000071!4.91e-13!18;CL:0002546!4.91e-13!18;CL:1000497!5.66e-10!18;CL:0002518!5.66e-10!18;CL:1000449!5.01e-09!16;CL:0000076!7.79e-09!62;CL:1000413!2.16e-07!9;CL:0002681!3.38e-07!13;CL:0002584!3.38e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000115;4.44e-19;36!CL:0002139;1.99e-18;24!CL:0000071;5.04e-14;18!CL:0002078;1.50e-13;45!CL:1000497;3.89e-12;17!CL:0002518;3.89e-12;17!CL:0000213;2.96e-11;58!CL:0000215;2.96e-11;58!CL:1000449;4.01e-11;15!CL:0002681;4.16e-09;12!CL:0002584;4.16e-09;12!CL:1000413;6.78e-08;9!CL:1000507;1.34e-07;10!CL:1000494;1.34e-07;10 | |ontology_enrichment_celltype_v019=CL:0000115;4.44e-19;36!CL:0002139;1.99e-18;24!CL:0000071;5.04e-14;18!CL:0002078;1.50e-13;45!CL:1000497;3.89e-12;17!CL:0002518;3.89e-12;17!CL:0000213;2.96e-11;58!CL:0000215;2.96e-11;58!CL:1000449;4.01e-11;15!CL:0002681;4.16e-09;12!CL:0002584;4.16e-09;12!CL:1000413;6.78e-08;9!CL:1000507;1.34e-07;10!CL:1000494;1.34e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.98e-22,36;CL:0002078,3.93e-21,45;CL:0000213,1.01e-19,58;CL:0000215,1.01e-19,58;CL:0002139,2.10e-18,24;CL:0000071,5.25e-14,18;CL:0002546,5.25e-14,18;CL:0000066,3.46e-12,253;CL:1000497,3.95e-12,17;CL:0002518,3.95e-12,17;CL:1000449,4.08e-11,15;CL:0002681,4.25e-09,12;CL:0002584,4.25e-09,12;CL:1000413,6.89e-08,9;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0000076,2.75e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;5.04e-14;18 | |ontology_enrichment_development_v019=CL:0002546;5.04e-14;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!4.47e-22!625;UBERON:0000480!9.64e-22!626;UBERON:0007023!3.60e-20!115;UBERON:0000468!1.17e-19!659;UBERON:0004111!7.21e-19!241;UBERON:0000025!9.60e-17!194;UBERON:0000062!2.57e-16!511;UBERON:0000922!6.40e-16!612;UBERON:0000477!1.70e-15!286;UBERON:0002050!2.74e-15!605;UBERON:0005423!2.74e-15!605;UBERON:0000923!5.53e-15!604;UBERON:0005291!5.53e-15!604;UBERON:0006598!5.53e-15!604;UBERON:0002532!5.53e-15!604;UBERON:0000119!9.67e-14!312;UBERON:0000483!1.65e-13!309;UBERON:0001986!4.91e-13!18;UBERON:0004638!4.91e-13!18;UBERON:0004852!4.91e-13!18;UBERON:0000487!2.34e-11!22;UBERON:0001049!1.25e-10!57;UBERON:0005068!1.25e-10!57;UBERON:0006241!1.25e-10!57;UBERON:0007135!1.25e-10!57;UBERON:0000489!2.27e-10!32;UBERON:0000064!3.81e-10!219;UBERON:0003075!4.98e-10!86;UBERON:0007284!4.98e-10!86;UBERON:0003103!1.52e-09!69;UBERON:0000080!1.96e-09!18;UBERON:0002120!1.96e-09!18;UBERON:0004875!1.96e-09!18;UBERON:0005721!1.96e-09!18;UBERON:0005754!1.96e-09!18;UBERON:0007297!1.96e-09!18;UBERON:0001008!2.41e-09!45;UBERON:0006554!2.65e-09!44;UBERON:0002113!2.88e-09!27;UBERON:0003918!2.88e-09!27;UBERON:0005095!2.88e-09!27;UBERON:0007687!2.88e-09!27;UBERON:0006555!3.23e-09!17;UBERON:0005103!3.23e-09!17;UBERON:0000083!3.23e-09!17;UBERON:0009201!3.23e-09!17;UBERON:0004819!3.23e-09!17;UBERON:0006553!3.23e-09!17;UBERON:0003074!3.23e-09!17;UBERON:0003060!3.23e-09!17;UBERON:0004211!5.01e-09!16;UBERON:0001285!5.01e-09!16;UBERON:0007684!5.01e-09!16;UBERON:0003220!5.01e-09!16;UBERON:0004208!5.01e-09!16;UBERON:0006914!5.73e-09!25;UBERON:0004876!8.80e-09!20;UBERON:0002616!1.08e-08!59;UBERON:0003914!1.66e-08!118;UBERON:0002346!1.80e-08!90;UBERON:0003081!1.80e-08!216;UBERON:0003887!1.91e-08!21;UBERON:0005172!2.22e-08!55;UBERON:0005173!2.22e-08!55;UBERON:0003080!2.60e-08!42;UBERON:0000955!2.78e-08!69;UBERON:0006238!2.78e-08!69;UBERON:0000058!4.43e-08!26;UBERON:0002780!6.81e-08!41;UBERON:0001890!6.81e-08!41;UBERON:0006240!6.81e-08!41;UBERON:0005743!7.78e-08!86;UBERON:0003064!1.89e-07!37;UBERON:0001017!1.92e-07!82;UBERON:0003915!2.16e-07!9;UBERON:0004700!2.16e-07!9;UBERON:0001917!2.16e-07!9;UBERON:0001851!2.18e-07!16;UBERON:0005177!2.40e-07!107;UBERON:0000353!2.57e-07!17;UBERON:0005631!3.02e-07!14;UBERON:0000158!3.02e-07!14;UBERON:0001225!3.38e-07!13;UBERON:0008987!3.38e-07!13;UBERON:0002020!4.01e-07!34;UBERON:0003528!4.01e-07!34;UBERON:0001893!4.25e-07!34;UBERON:0002791!6.00e-07!33 | |ontology_enrichment_uberon=UBERON:0000467!4.47e-22!625;UBERON:0000480!9.64e-22!626;UBERON:0007023!3.60e-20!115;UBERON:0000468!1.17e-19!659;UBERON:0004111!7.21e-19!241;UBERON:0000025!9.60e-17!194;UBERON:0000062!2.57e-16!511;UBERON:0000922!6.40e-16!612;UBERON:0000477!1.70e-15!286;UBERON:0002050!2.74e-15!605;UBERON:0005423!2.74e-15!605;UBERON:0000923!5.53e-15!604;UBERON:0005291!5.53e-15!604;UBERON:0006598!5.53e-15!604;UBERON:0002532!5.53e-15!604;UBERON:0000119!9.67e-14!312;UBERON:0000483!1.65e-13!309;UBERON:0001986!4.91e-13!18;UBERON:0004638!4.91e-13!18;UBERON:0004852!4.91e-13!18;UBERON:0000487!2.34e-11!22;UBERON:0001049!1.25e-10!57;UBERON:0005068!1.25e-10!57;UBERON:0006241!1.25e-10!57;UBERON:0007135!1.25e-10!57;UBERON:0000489!2.27e-10!32;UBERON:0000064!3.81e-10!219;UBERON:0003075!4.98e-10!86;UBERON:0007284!4.98e-10!86;UBERON:0003103!1.52e-09!69;UBERON:0000080!1.96e-09!18;UBERON:0002120!1.96e-09!18;UBERON:0004875!1.96e-09!18;UBERON:0005721!1.96e-09!18;UBERON:0005754!1.96e-09!18;UBERON:0007297!1.96e-09!18;UBERON:0001008!2.41e-09!45;UBERON:0006554!2.65e-09!44;UBERON:0002113!2.88e-09!27;UBERON:0003918!2.88e-09!27;UBERON:0005095!2.88e-09!27;UBERON:0007687!2.88e-09!27;UBERON:0006555!3.23e-09!17;UBERON:0005103!3.23e-09!17;UBERON:0000083!3.23e-09!17;UBERON:0009201!3.23e-09!17;UBERON:0004819!3.23e-09!17;UBERON:0006553!3.23e-09!17;UBERON:0003074!3.23e-09!17;UBERON:0003060!3.23e-09!17;UBERON:0004211!5.01e-09!16;UBERON:0001285!5.01e-09!16;UBERON:0007684!5.01e-09!16;UBERON:0003220!5.01e-09!16;UBERON:0004208!5.01e-09!16;UBERON:0006914!5.73e-09!25;UBERON:0004876!8.80e-09!20;UBERON:0002616!1.08e-08!59;UBERON:0003914!1.66e-08!118;UBERON:0002346!1.80e-08!90;UBERON:0003081!1.80e-08!216;UBERON:0003887!1.91e-08!21;UBERON:0005172!2.22e-08!55;UBERON:0005173!2.22e-08!55;UBERON:0003080!2.60e-08!42;UBERON:0000955!2.78e-08!69;UBERON:0006238!2.78e-08!69;UBERON:0000058!4.43e-08!26;UBERON:0002780!6.81e-08!41;UBERON:0001890!6.81e-08!41;UBERON:0006240!6.81e-08!41;UBERON:0005743!7.78e-08!86;UBERON:0003064!1.89e-07!37;UBERON:0001017!1.92e-07!82;UBERON:0003915!2.16e-07!9;UBERON:0004700!2.16e-07!9;UBERON:0001917!2.16e-07!9;UBERON:0001851!2.18e-07!16;UBERON:0005177!2.40e-07!107;UBERON:0000353!2.57e-07!17;UBERON:0005631!3.02e-07!14;UBERON:0000158!3.02e-07!14;UBERON:0001225!3.38e-07!13;UBERON:0008987!3.38e-07!13;UBERON:0002020!4.01e-07!34;UBERON:0003528!4.01e-07!34;UBERON:0001893!4.25e-07!34;UBERON:0002791!6.00e-07!33 | ||
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| ||
|short_description=p1@PDGFB | |short_description=p1@PDGFB | ||
}} | }} |
Latest revision as of 18:17, 24 September 2015
Short description: | p1@PDGFB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDGFB_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -17bp_to_NM_002608, uc003axf.2_5end |
EntrezGene: | PDGFB |
HGNC: | 8800 |
UniProt: | P01127 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.98e-22 | 36 |
meso-epithelial cell | 3.93e-21 | 45 |
lining cell | 1.01e-19 | 58 |
barrier cell | 1.01e-19 | 58 |
endothelial cell of vascular tree | 2.10e-18 | 24 |
blood vessel endothelial cell | 5.25e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.25e-14 | 18 |
epithelial cell | 3.46e-12 | 253 |
kidney cell | 3.95e-12 | 17 |
kidney epithelial cell | 3.95e-12 | 17 |
epithelial cell of nephron | 4.08e-11 | 15 |
kidney cortical cell | 4.25e-09 | 12 |
renal cortical epithelial cell | 4.25e-09 | 12 |
endothelial cell of artery | 6.89e-08 | 9 |
kidney tubule cell | 1.36e-07 | 10 |
nephron tubule epithelial cell | 1.36e-07 | 10 |
squamous epithelial cell | 2.75e-07 | 63 |