FFCP PHASE1:Hg19::chr16:19421803..19421848,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79838 | |EntrezGene=79838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |HGNC=22999 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYU8 | |UniProt=F5GYU8 | ||
|association_with_transcript=-12bp_to_ENST00000541464,uc010vaq.1_5end | |association_with_transcript=-12bp_to_ENST00000541464,uc010vaq.1_5end | ||
|cluster_id=chr16:19421803..19421848,+ | |||
|coexpression_cluster_id=C3539 | |coexpression_cluster_id=C3539 | ||
|description=CAGE_peak_4_at_TMC5_5end | |description=CAGE_peak_4_at_TMC5_5end | ||
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|ontology_enrichment_celltype=CL:0000066!5.85e-10!254 | |ontology_enrichment_celltype=CL:0000066!5.85e-10!254 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.93e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.77e-33;29!UBERON:0006595;1.16e-15;86!UBERON:0001041;1.06e-09;30!UBERON:0009847;1.70e-09;3!UBERON:0003353;1.70e-09;3 | |ontology_enrichment_development_v019=UBERON:0008947;5.77e-33;29!UBERON:0006595;1.16e-15;86!UBERON:0001041;1.06e-09;30!UBERON:0009847;1.70e-09;3!UBERON:0003353;1.70e-09;3 | ||
|ontology_enrichment_disease=DOID:305!5.49e-29!106;DOID:0050687!3.59e-24!143;DOID:162!1.13e-11!235;DOID:14566!5.37e-11!239;DOID:299!2.42e-09!25;DOID:1749!8.29e-09!14 | |ontology_enrichment_disease=DOID:305!5.49e-29!106;DOID:0050687!3.59e-24!143;DOID:162!1.13e-11!235;DOID:14566!5.37e-11!239;DOID:299!2.42e-09!25;DOID:1749!8.29e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:299;8.23e-10;25!DOID:305;1.10e-09;106!DOID:0050615;4.65e-08;16!DOID:3493;8.20e-07;2!DOID:1749;9.24e-07;14 | |ontology_enrichment_disease_v019=DOID:299;8.23e-10;25!DOID:305;1.10e-09;106!DOID:0050615;4.65e-08;16!DOID:3493;8.20e-07;2!DOID:1749;9.24e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,4.80e-33,106;DOID:0050687,2.87e-23,143;DOID:162,1.83e-12,235;DOID:14566,5.54e-12,239;DOID:299,9.12e-10,25;DOID:0050615,4.38e-08,16;DOID:3493,6.32e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.84e-21!169;UBERON:0000925!6.84e-21!169;UBERON:0006595!6.84e-21!169;UBERON:0004921!7.81e-21!129;UBERON:0004185!7.81e-21!129;UBERON:0001007!1.31e-20!155;UBERON:0001555!1.31e-20!155;UBERON:0007026!1.31e-20!155;UBERON:0000077!5.83e-18!130;UBERON:0000065!4.88e-17!53;UBERON:0008947!1.98e-16!38;UBERON:0003258!1.98e-16!38;UBERON:0007023!5.27e-16!115;UBERON:0001004!1.19e-15!72;UBERON:0001041!1.04e-13!98;UBERON:0001737!7.25e-13!9;UBERON:0000072!1.41e-11!46;UBERON:0000481!1.65e-09!347;UBERON:0001557!1.67e-08!19;UBERON:0000063!4.44e-08!97;UBERON:0005153!6.75e-08!37;UBERON:0002048!1.69e-07!22;UBERON:0000117!1.69e-07!22;UBERON:0000171!1.69e-07!22;UBERON:0000170!1.69e-07!22;UBERON:0005597!1.69e-07!22;UBERON:0000118!1.69e-07!22;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0002294!5.57e-07!7;UBERON:0001173!5.57e-07!7;UBERON:0004912!5.57e-07!7;UBERON:0000064!7.09e-07!219;UBERON:0005911!9.92e-07!82 | |ontology_enrichment_uberon=UBERON:0004119!6.84e-21!169;UBERON:0000925!6.84e-21!169;UBERON:0006595!6.84e-21!169;UBERON:0004921!7.81e-21!129;UBERON:0004185!7.81e-21!129;UBERON:0001007!1.31e-20!155;UBERON:0001555!1.31e-20!155;UBERON:0007026!1.31e-20!155;UBERON:0000077!5.83e-18!130;UBERON:0000065!4.88e-17!53;UBERON:0008947!1.98e-16!38;UBERON:0003258!1.98e-16!38;UBERON:0007023!5.27e-16!115;UBERON:0001004!1.19e-15!72;UBERON:0001041!1.04e-13!98;UBERON:0001737!7.25e-13!9;UBERON:0000072!1.41e-11!46;UBERON:0000481!1.65e-09!347;UBERON:0001557!1.67e-08!19;UBERON:0000063!4.44e-08!97;UBERON:0005153!6.75e-08!37;UBERON:0002048!1.69e-07!22;UBERON:0000117!1.69e-07!22;UBERON:0000171!1.69e-07!22;UBERON:0000170!1.69e-07!22;UBERON:0005597!1.69e-07!22;UBERON:0000118!1.69e-07!22;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0002294!5.57e-07!7;UBERON:0001173!5.57e-07!7;UBERON:0004912!5.57e-07!7;UBERON:0000064!7.09e-07!219;UBERON:0005911!9.92e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.66e-26;9!UBERON:0001557;6.66e-26;9!UBERON:0000065;6.45e-16;44!UBERON:0000072;1.42e-14;37!UBERON:0001004;6.09e-11;65!UBERON:0002294;4.04e-10;7!UBERON:0001173;4.04e-10;7!UBERON:0002048;1.78e-09;22!UBERON:0000117;1.78e-09;22!UBERON:0000171;1.78e-09;22!UBERON:0000170;1.78e-09;22!UBERON:0004921;1.66e-07;33!UBERON:0002394;5.23e-07;4!UBERON:0003928;5.23e-07;4!UBERON:0005409;8.67e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0001737;6.66e-26;9!UBERON:0001557;6.66e-26;9!UBERON:0000065;6.45e-16;44!UBERON:0000072;1.42e-14;37!UBERON:0001004;6.09e-11;65!UBERON:0002294;4.04e-10;7!UBERON:0001173;4.04e-10;7!UBERON:0002048;1.78e-09;22!UBERON:0000117;1.78e-09;22!UBERON:0000171;1.78e-09;22!UBERON:0000170;1.78e-09;22!UBERON:0004921;1.66e-07;33!UBERON:0002394;5.23e-07;4!UBERON:0003928;5.23e-07;4!UBERON:0005409;8.67e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.16e-26,9;UBERON:0004921,4.96e-24,118;UBERON:0008947,5.34e-24,38;UBERON:0003258,5.34e-24,38;UBERON:0001007,2.36e-20,145;UBERON:0001555,2.36e-20,145;UBERON:0007026,2.36e-20,145;UBERON:0001041,2.72e-19,87;UBERON:0000065,4.04e-19,54;UBERON:0004119,9.68e-19,160;UBERON:0000925,9.68e-19,160;UBERON:0006595,9.68e-19,160;UBERON:0001004,7.68e-17,74;UBERON:0000072,4.84e-14,47;UBERON:0001557,6.32e-14,19;UBERON:0005153,1.53e-10,37;UBERON:0002048,1.71e-09,22;UBERON:0000117,1.71e-09,22;UBERON:0000171,1.71e-09,22;UBERON:0000170,1.71e-09,22;UBERON:0005597,1.71e-09,22;UBERON:0000118,1.71e-09,22;UBERON:0011216,3.72e-08,223;UBERON:0002294,7.97e-08,9;UBERON:0001173,7.97e-08,9;UBERON:0004912,7.97e-08,9;UBERON:0005157,1.14e-07,47;UBERON:0001048,3.77e-07,160;UBERON:0005178,6.43e-07,34;UBERON:0002224,6.43e-07,34 | |||
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| ||
|short_description=p4@TMC5 | |short_description=p4@TMC5 | ||
}} | }} |
Latest revision as of 23:41, 24 September 2015
Short description: | p4@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TMC5_5end |
Coexpression cluster: | C3539_lung_adenocarcinoma_trachea_gastric_somatostatinoma_Hep2_signet |
Association with transcript: | -12bp_to_ENST00000541464, uc010vaq.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | F5GYU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.93e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.16e-26 | 9 |
subdivision of digestive tract | 4.96e-24 | 118 |
respiratory primordium | 5.34e-24 | 38 |
endoderm of foregut | 5.34e-24 | 38 |
digestive system | 2.36e-20 | 145 |
digestive tract | 2.36e-20 | 145 |
primitive gut | 2.36e-20 | 145 |
foregut | 2.72e-19 | 87 |
respiratory tract | 4.04e-19 | 54 |
endoderm-derived structure | 9.68e-19 | 160 |
endoderm | 9.68e-19 | 160 |
presumptive endoderm | 9.68e-19 | 160 |
respiratory system | 7.68e-17 | 74 |
segment of respiratory tract | 4.84e-14 | 47 |
upper respiratory tract | 6.32e-14 | 19 |
epithelial bud | 1.53e-10 | 37 |
lung | 1.71e-09 | 22 |
respiratory tube | 1.71e-09 | 22 |
respiration organ | 1.71e-09 | 22 |
pair of lungs | 1.71e-09 | 22 |
lung primordium | 1.71e-09 | 22 |
lung bud | 1.71e-09 | 22 |
organ system subdivision | 3.72e-08 | 223 |
biliary system | 7.97e-08 | 9 |
biliary tree | 7.97e-08 | 9 |
biliary bud | 7.97e-08 | 9 |
epithelial fold | 1.14e-07 | 47 |
primordium | 3.77e-07 | 160 |
thoracic cavity element | 6.43e-07 | 34 |
thoracic cavity | 6.43e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.80e-33 | 106 |
cell type cancer | 2.87e-23 | 143 |
cancer | 1.83e-12 | 235 |
disease of cellular proliferation | 5.54e-12 | 239 |
adenocarcinoma | 9.12e-10 | 25 |
respiratory system cancer | 4.38e-08 | 16 |
signet ring cell adenocarcinoma | 6.32e-07 | 2 |