FFCP PHASE1:Hg19::chr9:130524695..130524736,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10044 | |EntrezGene=10044 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16884 | |HGNC=16884 | ||
|TSSclassifier=strong | |||
|UniProt=B4DG32,Q8N5H7 | |UniProt=B4DG32,Q8N5H7 | ||
|association_with_transcript=0bp_to_ENST00000429553,ENST00000440630,NM_001142531,NM_001142532,uc004brz.3,uc011mak.1_5end | |association_with_transcript=0bp_to_ENST00000429553,ENST00000440630,NM_001142531,NM_001142532,uc004brz.3,uc011mak.1_5end | ||
|cluster_id=chr9:130524695..130524736,- | |||
|coexpression_cluster_id=C140 | |coexpression_cluster_id=C140 | ||
|description=CAGE_peak_10_at_SH2D3C_5end | |description=CAGE_peak_10_at_SH2D3C_5end | ||
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|ontology_enrichment_celltype=CL:0002139!9.90e-37!24;CL:0000115!1.07e-36!35;CL:0000071!4.37e-28!18;CL:0002546!4.37e-28!18;CL:0002078!6.96e-27!44;CL:0000213!2.61e-18!57;CL:0000215!2.61e-18!57;CL:1000413!3.41e-15!9;CL:0002544!1.31e-10!6;CL:0005020!3.72e-10!6;CL:0002138!3.72e-10!6;CL:0005022!3.72e-10!6;CL:0002543!5.71e-10!6 | |ontology_enrichment_celltype=CL:0002139!9.90e-37!24;CL:0000115!1.07e-36!35;CL:0000071!4.37e-28!18;CL:0002546!4.37e-28!18;CL:0002078!6.96e-27!44;CL:0000213!2.61e-18!57;CL:0000215!2.61e-18!57;CL:1000413!3.41e-15!9;CL:0002544!1.31e-10!6;CL:0005020!3.72e-10!6;CL:0002138!3.72e-10!6;CL:0005022!3.72e-10!6;CL:0002543!5.71e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.68e-88;24!CL:0000071;4.66e-71;18!CL:0000115;2.40e-66;36!CL:0002078;1.17e-41;45!CL:1000413;2.70e-41;9!CL:0000213;4.16e-30;58!CL:0000215;4.16e-30;58!CL:0002544;7.21e-28;6!CL:0002138;5.96e-19;6!CL:0002543;1.60e-18;6!CL:0002144;4.50e-15;3!CL:0002545;1.26e-10;2!CL:0000076;2.13e-10;63!CL:0002188;5.33e-09;5!CL:0002618;7.37e-07;3 | |ontology_enrichment_celltype_v019=CL:0002139;1.68e-88;24!CL:0000071;4.66e-71;18!CL:0000115;2.40e-66;36!CL:0002078;1.17e-41;45!CL:1000413;2.70e-41;9!CL:0000213;4.16e-30;58!CL:0000215;4.16e-30;58!CL:0002544;7.21e-28;6!CL:0002138;5.96e-19;6!CL:0002543;1.60e-18;6!CL:0002144;4.50e-15;3!CL:0002545;1.26e-10;2!CL:0000076;2.13e-10;63!CL:0002188;5.33e-09;5!CL:0002618;7.37e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.15e-88,24;CL:0000115,3.22e-81,36;CL:0000071,4.07e-71,18;CL:0002546,4.07e-71,18;CL:0002078,9.83e-64,45;CL:0000213,4.70e-48,58;CL:0000215,4.70e-48,58;CL:1000413,2.60e-41,9;CL:0002544,6.93e-28,6;CL:0000222,8.30e-20,121;CL:0005020,4.78e-19,6;CL:0002138,4.78e-19,6;CL:0005022,4.78e-19,6;CL:0002543,1.31e-18,6;CL:0000076,2.07e-17,63;CL:0002144,5.19e-15,3;CL:0002545,1.39e-10,2;CL:0002188,3.90e-09,5;CL:0002618,7.38e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;4.66e-71;18!CL:0005022;5.96e-19;6!CL:0000222;1.47e-08;121 | |ontology_enrichment_development_v019=CL:0002546;4.66e-71;18!CL:0005022;5.96e-19;6!CL:0000222;1.47e-08;121 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;6.95e-10;2 | |ontology_enrichment_disease_v019=DOID:114;6.95e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:114,9.53e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.70e-45!115;UBERON:0001986!4.37e-28!18;UBERON:0004638!4.37e-28!18;UBERON:0004852!4.37e-28!18;UBERON:0000487!8.92e-22!22;UBERON:0004111!7.47e-21!241;UBERON:0000025!9.67e-20!194;UBERON:0000477!4.02e-19!286;UBERON:0006914!2.17e-18!25;UBERON:0001049!8.91e-16!57;UBERON:0005068!8.91e-16!57;UBERON:0006241!8.91e-16!57;UBERON:0007135!8.91e-16!57;UBERON:0000055!2.61e-15!69;UBERON:0003915!3.41e-15!9;UBERON:0004700!3.41e-15!9;UBERON:0001917!3.41e-15!9;UBERON:0003075!2.66e-12!86;UBERON:0007284!2.66e-12!86;UBERON:0002049!4.40e-12!79;UBERON:0007798!4.40e-12!79;UBERON:0004872!5.21e-12!84;UBERON:0000119!6.10e-12!312;UBERON:0002616!9.50e-12!59;UBERON:0000483!2.44e-11!309;UBERON:0002346!2.66e-11!90;UBERON:0001981!3.69e-11!60;UBERON:0007500!3.69e-11!60;UBERON:0004537!3.69e-11!60;UBERON:0006965!3.69e-11!60;UBERON:0001009!4.14e-11!113;UBERON:0002020!2.37e-10!34;UBERON:0003528!2.37e-10!34;UBERON:0001017!2.69e-10!82;UBERON:0005743!3.01e-10!86;UBERON:0001893!3.16e-10!34;UBERON:0000468!6.71e-10!659;UBERON:0001950!8.67e-10!20;UBERON:0002780!1.14e-09!41;UBERON:0001890!1.14e-09!41;UBERON:0006240!1.14e-09!41;UBERON:0000467!1.23e-09!625;UBERON:0000480!1.45e-09!626;UBERON:0002791!1.53e-09!33;UBERON:0000955!1.99e-09!69;UBERON:0006238!1.99e-09!69;UBERON:0003080!2.62e-09!42;UBERON:0004535!2.83e-09!110;UBERON:0000073!3.22e-09!94;UBERON:0001016!3.22e-09!94;UBERON:0001869!6.67e-09!32;UBERON:0002619!1.27e-08!22;UBERON:0003076!1.64e-08!15;UBERON:0003057!1.64e-08!15;UBERON:0001638!2.51e-08!9;UBERON:0003920!2.51e-08!9;UBERON:0004582!2.51e-08!9;UBERON:0003914!1.16e-07!118;UBERON:0002465!1.44e-07!10;UBERON:0003103!1.48e-07!69;UBERON:0001473!2.60e-07!8;UBERON:0004536!2.60e-07!8;UBERON:0006558!2.60e-07!8;UBERON:0000956!3.19e-07!25;UBERON:0000203!3.19e-07!25;UBERON:0004732!4.72e-07!13 | |ontology_enrichment_uberon=UBERON:0007023!2.70e-45!115;UBERON:0001986!4.37e-28!18;UBERON:0004638!4.37e-28!18;UBERON:0004852!4.37e-28!18;UBERON:0000487!8.92e-22!22;UBERON:0004111!7.47e-21!241;UBERON:0000025!9.67e-20!194;UBERON:0000477!4.02e-19!286;UBERON:0006914!2.17e-18!25;UBERON:0001049!8.91e-16!57;UBERON:0005068!8.91e-16!57;UBERON:0006241!8.91e-16!57;UBERON:0007135!8.91e-16!57;UBERON:0000055!2.61e-15!69;UBERON:0003915!3.41e-15!9;UBERON:0004700!3.41e-15!9;UBERON:0001917!3.41e-15!9;UBERON:0003075!2.66e-12!86;UBERON:0007284!2.66e-12!86;UBERON:0002049!4.40e-12!79;UBERON:0007798!4.40e-12!79;UBERON:0004872!5.21e-12!84;UBERON:0000119!6.10e-12!312;UBERON:0002616!9.50e-12!59;UBERON:0000483!2.44e-11!309;UBERON:0002346!2.66e-11!90;UBERON:0001981!3.69e-11!60;UBERON:0007500!3.69e-11!60;UBERON:0004537!3.69e-11!60;UBERON:0006965!3.69e-11!60;UBERON:0001009!4.14e-11!113;UBERON:0002020!2.37e-10!34;UBERON:0003528!2.37e-10!34;UBERON:0001017!2.69e-10!82;UBERON:0005743!3.01e-10!86;UBERON:0001893!3.16e-10!34;UBERON:0000468!6.71e-10!659;UBERON:0001950!8.67e-10!20;UBERON:0002780!1.14e-09!41;UBERON:0001890!1.14e-09!41;UBERON:0006240!1.14e-09!41;UBERON:0000467!1.23e-09!625;UBERON:0000480!1.45e-09!626;UBERON:0002791!1.53e-09!33;UBERON:0000955!1.99e-09!69;UBERON:0006238!1.99e-09!69;UBERON:0003080!2.62e-09!42;UBERON:0004535!2.83e-09!110;UBERON:0000073!3.22e-09!94;UBERON:0001016!3.22e-09!94;UBERON:0001869!6.67e-09!32;UBERON:0002619!1.27e-08!22;UBERON:0003076!1.64e-08!15;UBERON:0003057!1.64e-08!15;UBERON:0001638!2.51e-08!9;UBERON:0003920!2.51e-08!9;UBERON:0004582!2.51e-08!9;UBERON:0003914!1.16e-07!118;UBERON:0002465!1.44e-07!10;UBERON:0003103!1.48e-07!69;UBERON:0001473!2.60e-07!8;UBERON:0004536!2.60e-07!8;UBERON:0006558!2.60e-07!8;UBERON:0000956!3.19e-07!25;UBERON:0000203!3.19e-07!25;UBERON:0004732!4.72e-07!13 | ||
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|short_description=p10@SH2D3C | |short_description=p10@SH2D3C | ||
}} | }} |
Latest revision as of 05:06, 25 September 2015
Short description: | p10@SH2D3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SH2D3C_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 0bp_to_ENST00000429553, ENST00000440630, NM_001142531, NM_001142532, uc004brz.3, uc011mak.1_5end |
EntrezGene: | SH2D3C |
HGNC: | 16884 |
UniProt: | B4DG32Q8N5H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.15e-88 | 24 |
endothelial cell | 3.22e-81 | 36 |
blood vessel endothelial cell | 4.07e-71 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.07e-71 | 18 |
meso-epithelial cell | 9.83e-64 | 45 |
lining cell | 4.70e-48 | 58 |
barrier cell | 4.70e-48 | 58 |
endothelial cell of artery | 2.60e-41 | 9 |
aortic endothelial cell | 6.93e-28 | 6 |
mesodermal cell | 8.30e-20 | 121 |
lymphangioblast | 4.78e-19 | 6 |
endothelial cell of lymphatic vessel | 4.78e-19 | 6 |
vascular lymphangioblast | 4.78e-19 | 6 |
vein endothelial cell | 1.31e-18 | 6 |
squamous epithelial cell | 2.07e-17 | 63 |
capillary endothelial cell | 5.19e-15 | 3 |
thoracic aorta endothelial cell | 1.39e-10 | 2 |
glomerular endothelial cell | 3.90e-09 | 5 |
endothelial cell of umbilical vein | 7.38e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 9.53e-10 | 2 |