FFCP PHASE1:Hg19::chr17:46688310..46688323,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:46688310..46688323,-
|short_description=p4@HOXB7
|description=CAGE_peak_4_at_HOXB7_5end
|association_with_transcript=55bp_to_ENST00000239165_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3217 | |EntrezGene=3217 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5118 | |HGNC=5118 | ||
|TSSclassifier=strong | |||
|UniProt=P09629 | |UniProt=P09629 | ||
|association_with_transcript=55bp_to_ENST00000239165_5end | |||
|cluster_id=chr17:46688310..46688323,- | |||
|description=CAGE_peak_4_at_HOXB7_5end | |||
|id=chr17:46688310..46688323,- | |||
|ontology_enrichment_celltype=CL:0000066!9.03e-14!254;CL:0000213!4.63e-10!57;CL:0000215!4.63e-10!57;CL:1000449!5.12e-10!16;CL:1000497!2.73e-09!18;CL:0002518!2.73e-09!18;CL:1000507!5.50e-09!12;CL:1000494!5.50e-09!12;CL:0002139!8.45e-09!24;CL:0000222!2.36e-08!119;CL:0002078!3.75e-08!44;CL:0002681!9.49e-08!13;CL:0002584!9.49e-08!13;CL:0000115!1.72e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.30e-11;24!CL:0000115;2.45e-09;36!CL:1000449;7.74e-09;15!CL:0002138;1.10e-08;6!CL:1000497;1.41e-07;17!CL:0002518;1.41e-07;17!CL:0002078;1.69e-07;45!CL:0000213;9.93e-07;58!CL:0000215;9.93e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,2.48e-12,45;CL:0000115,8.61e-12,36;CL:0002139,3.20e-11,24;CL:0000213,1.59e-10,58;CL:0000215,1.59e-10,58;CL:1000449,5.77e-09,15;CL:0005020,6.85e-09,6;CL:0002138,6.85e-09,6;CL:0005022,6.85e-09,6;CL:1000497,1.09e-07,17;CL:0002518,1.09e-07,17;CL:0000066,3.45e-07,253 | |||
|ontology_enrichment_development_v019=CL:0005022;1.10e-08;6!UBERON:0006241;5.63e-07;3!UBERON:0003057;5.63e-07;3 | |||
|ontology_enrichment_disease=DOID:0050687!1.75e-10!143;DOID:14566!1.24e-08!239;DOID:162!2.46e-08!235;DOID:305!7.78e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!4.38e-14!32;UBERON:0000080!7.66e-12!18;UBERON:0002120!7.66e-12!18;UBERON:0004875!7.66e-12!18;UBERON:0005721!7.66e-12!18;UBERON:0005754!7.66e-12!18;UBERON:0007297!7.66e-12!18;UBERON:0004876!1.39e-11!20;UBERON:0006555!6.01e-11!17;UBERON:0005103!6.01e-11!17;UBERON:0000083!6.01e-11!17;UBERON:0009201!6.01e-11!17;UBERON:0004819!6.01e-11!17;UBERON:0006553!6.01e-11!17;UBERON:0003074!6.01e-11!17;UBERON:0003060!6.01e-11!17;UBERON:0000058!6.90e-11!26;UBERON:0002113!9.06e-11!27;UBERON:0003918!9.06e-11!27;UBERON:0005095!9.06e-11!27;UBERON:0007687!9.06e-11!27;UBERON:0003887!3.47e-10!21;UBERON:0003064!3.97e-10!37;UBERON:0006554!4.44e-10!44;UBERON:0004211!5.12e-10!16;UBERON:0001285!5.12e-10!16;UBERON:0007684!5.12e-10!16;UBERON:0003220!5.12e-10!16;UBERON:0004208!5.12e-10!16;UBERON:0001008!1.25e-09!45;UBERON:0009773!5.50e-09!12;UBERON:0001231!5.50e-09!12;UBERON:0004810!5.50e-09!12;UBERON:0009569!9.04e-08!113;UBERON:0001225!9.49e-08!13;UBERON:0008987!9.49e-08!13;UBERON:0001851!1.04e-07!16;UBERON:0003886!1.07e-07!63;UBERON:0002417!1.69e-07!61;UBERON:0000916!1.69e-07!61;UBERON:0000353!3.72e-07!17;UBERON:0002100!4.22e-07!216;UBERON:0005177!9.65e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.98e-11;29!UBERON:0006555;7.74e-09;15!UBERON:0004819;7.74e-09;15!UBERON:0001285;7.74e-09;15!UBERON:0007684;7.74e-09;15!UBERON:0001473;1.02e-08;8!UBERON:0004536;1.02e-08;8!UBERON:0006558;1.02e-08;8!UBERON:0002113;3.02e-07;24!UBERON:0011143;3.02e-07;24!UBERON:0006947;5.20e-07;3!UBERON:0004054;5.20e-07;3!UBERON:0002240;5.63e-07;3!UBERON:0005174;5.63e-07;3!UBERON:0001137;5.63e-07;3!UBERON:0002050;8.55e-07;5!UBERON:0005423;8.55e-07;5!UBERON:0002465;8.58e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,3.06e-14,31;UBERON:0006555,1.59e-10,16;UBERON:0004819,1.59e-10,16;UBERON:0002113,6.53e-10,26;UBERON:0003918,6.53e-10,26;UBERON:0011143,6.53e-10,26;UBERON:0005095,6.53e-10,26;UBERON:0007687,6.53e-10,26;UBERON:0004211,5.77e-09,15;UBERON:0009773,5.77e-09,15;UBERON:0001231,5.77e-09,15;UBERON:0001285,5.77e-09,15;UBERON:0007684,5.77e-09,15;UBERON:0004208,5.77e-09,15;UBERON:0001473,6.49e-09,8;UBERON:0004536,6.49e-09,8;UBERON:0006558,6.49e-09,8;UBERON:0004876,2.24e-08,11;UBERON:0000080,5.50e-08,9;UBERON:0002120,5.50e-08,9;UBERON:0004875,5.50e-08,9;UBERON:0005721,5.50e-08,9;UBERON:0005754,5.50e-08,9;UBERON:0007297,5.50e-08,9;UBERON:0006947,2.71e-07,3;UBERON:0004054,2.71e-07,3;UBERON:0000058,3.38e-07,19;UBERON:0002240,5.96e-07,3;UBERON:0005174,5.96e-07,3;UBERON:0001137,5.96e-07,3;UBERON:0002465,6.07e-07,10;UBERON:0002417,6.63e-07,60;UBERON:0000916,6.63e-07,60 | |||
|phase1_expression=0.54503513781167,1.07050261945492,1.69145284915165,0,0,0,0,0.631719873426831,1.04474251279935,0,0,0,0,1.73272894144065,0.994192127183747,0,1.20538905604795,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0,3.35941786920128,4.26919515224052,2.67776490211736,1.61131726843659,6.0821768457481,0.732186172644509,1.10298924103761,4.0507097394088,1.87529429396568,1.34717623575702,0.900891843866578,0,1.89853131913626,1.64881569537367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597794722207204,0.704606991862589,0.323745888736263,0.702254033511242,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0,0,0,0,0,0.206105058476878,0.257640540045629,0,1.18143432568886,0.487185025805993,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0.721879481669586,1.41968160047813,1.51726221070292,1.44606617930089,0.992645754591546,0,0.71181185733329,0.539325232640658,0.98110732562673,0.769494313892781,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,1.87676382089396,0.462985512576611,2.66355813128438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.444485260045183,1.90994212779139,1.17217447210047,3.4214489204541,1.13110241973656,4.80548892550268,2.85826432630578,0,0,0,1.29271715757778,0,0.845302752556,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0.602878754119172,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0.434343920002738,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,3.50119364741774,0.813795071099207,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0.460385919864187,1.12264037773229,2.43464383585832,2.04682899626681,0.965123526861645,0,1.07946785661859,0.887808626565635,1.23190734020714,0,0.464841513839837,0.604297247958111,0.200506470303285,0.0920809889358963,0,0,0,0.902399225814824,1.23224539367064,2.35304930753057,2.92278449306521,1.16106791782163,5.68666920354483,2.89159298970077,0.647747748306418,1.54227252690289,0.270946437543853,1.50506932156456,0.254876273045038,0.831076008928724,1.79099803777743,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.742585499285292,0,0,0,0,0.154048617114644,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,1.27948895655667,1.71175595213568,0,0,0,0.823611089208164,0.589062011728432,0,0,0,0,0.487426979262569,1.05650146756755,0,0.141405431953713,0,0,0,0.438450885253763,0.578775534266688,0,0.405820753925408,0.92947049429925,0,0.860468113224309,1.3754865741837,1.07001315444375,0.354761064070598,0,0,0,0,0,0,0,0.376575203107117,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0.159426272728822,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0.121360521749513,0.222886768554957,3.97790605528978,0,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0.251932747854276,2.0453736500431,0,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0.874813840149763,0,0,0,0,0,0,0,0.653630781113941,0.139423744278603,1.30815439456455,0.455768223388005,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0.802577647298789,0,0,0,0.728341138602278,1.97292201424695,1.20990716048664,0,0,0,0.829505531177977,0,0.992975867626496,0,0,4.55375273647668,0.554698692052555,0,0.195984794828755,1.48000651186684,5.76598005198699,3.78369271437556,0.967563312890852,0.730893170861856,0.903270027585302,0,0.617792886840502,0,0.137041924646751,0.993573058514948,0,3.12882212375685,0.961905843018405,0,1.19885765749278,1.15272333723285,0.458146384663663,1.20116498503375,0.432164393964449,0.99402028452346,0.235694034616795,1.22313785466253,1.98745407993433,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0.223171457441873,0,0,0,0,0,0,0.885847333632739,0,0,0,0,0,0,0,0,0,0,1.65491985328316,1.57363764404994,0,0,0.959575986597226,0,0,0,0,0,0,2.39460383124975,0.164185041498678,1.36310417428337,1.24643300672138,0,0,0,0,0.513260513652988,0,0.106787412567695,0,0,0.496166021811951,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0.124980407962107,3.03298235083296,2.56918800190471,2.11739237728355,0,1.1593682288866,0.298509605773748,0.934853239388898,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0.53168342911599,0.521745061811734,0.150257608997218,1.52322084867518,0.406870733204662,0,0.322231671127465,0,0,1.60011105865261,1.03018711554838,3.03074539889327,0,0,1.50109113962448,0.521988583930423,0.226705925512272,0.463044948647668,0.734210113519403,1.61179956973339,0.926404341482917,0.657852148736121,3.18040462702586,0,0,0,0,1.21543982470953,0,0,0,0.163565394255844,2.94848863961771,0.98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| ||
|short_description=p4@HOXB7 | |||
}} | }} |
Latest revision as of 07:30, 25 September 2015
Short description: | p4@HOXB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXB7_5end |
Coexpression cluster: | NA |
Association with transcript: | 55bp_to_ENST00000239165_5end |
EntrezGene: | HOXB7 |
HGNC: | 5118 |
UniProt: | P09629 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 2.48e-12 | 45 |
endothelial cell | 8.61e-12 | 36 |
endothelial cell of vascular tree | 3.20e-11 | 24 |
lining cell | 1.59e-10 | 58 |
barrier cell | 1.59e-10 | 58 |
epithelial cell of nephron | 5.77e-09 | 15 |
lymphangioblast | 6.85e-09 | 6 |
endothelial cell of lymphatic vessel | 6.85e-09 | 6 |
vascular lymphangioblast | 6.85e-09 | 6 |
kidney cell | 1.09e-07 | 17 |
kidney epithelial cell | 1.09e-07 | 17 |
epithelial cell | 3.45e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 3.06e-14 | 31 |
excretory tube | 1.59e-10 | 16 |
kidney epithelium | 1.59e-10 | 16 |
kidney | 6.53e-10 | 26 |
kidney mesenchyme | 6.53e-10 | 26 |
upper urinary tract | 6.53e-10 | 26 |
kidney rudiment | 6.53e-10 | 26 |
kidney field | 6.53e-10 | 26 |
nephron epithelium | 5.77e-09 | 15 |
renal tubule | 5.77e-09 | 15 |
nephron tubule | 5.77e-09 | 15 |
nephron | 5.77e-09 | 15 |
uriniferous tubule | 5.77e-09 | 15 |
nephrogenic mesenchyme | 5.77e-09 | 15 |
lymphatic vessel | 6.49e-09 | 8 |
lymph vasculature | 6.49e-09 | 8 |
lymphatic part of lymphoid system | 6.49e-09 | 8 |
urogenital ridge | 2.24e-08 | 11 |
mesonephros | 5.50e-08 | 9 |
pronephros | 5.50e-08 | 9 |
nephrogenic cord | 5.50e-08 | 9 |
pronephric mesoderm | 5.50e-08 | 9 |
rostral part of nephrogenic cord | 5.50e-08 | 9 |
presumptive pronephric mesoderm | 5.50e-08 | 9 |
male genital duct | 2.71e-07 | 3 |
internal male genitalia | 2.71e-07 | 3 |
duct | 3.38e-07 | 19 |
spinal cord | 5.96e-07 | 3 |
dorsal region element | 5.96e-07 | 3 |
dorsum | 5.96e-07 | 3 |
lymphoid system | 6.07e-07 | 10 |
abdominal segment of trunk | 6.63e-07 | 60 |
abdomen | 6.63e-07 | 60 |