FFCP PHASE1:Mm9::chr4:130348609..130348635,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20970 | |EntrezGene=20970 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1801 | |MCL_coexpression_id=1801 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000146093_5end | |association_with_transcript=0bp_to_ENSMUST00000146093_5end | ||
|cluster_id=chr4:130348609..130348635,+ | |||
|description=CAGE_peak_5_at_Sdc3_5end | |description=CAGE_peak_5_at_Sdc3_5end | ||
|id=chr4:130348609..130348635,+ | |id=chr4:130348609..130348635,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.61e-13!23;CL:0000337!1.61e-13!23;CL:0002319!3.99e-13!43;CL:0000055!9.84e-13!50;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0000540!1.46e-12!33;CL:0000047!1.46e-12!33;CL:0000031!1.46e-12!33;CL:0000404!1.46e-12!33;CL:0000221!2.17e-12!44;CL:0000133!2.17e-12!44 | |ontology_enrichment_celltype=CL:0000117!1.61e-13!23;CL:0000337!1.61e-13!23;CL:0002319!3.99e-13!43;CL:0000055!9.84e-13!50;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0000540!1.46e-12!33;CL:0000047!1.46e-12!33;CL:0000031!1.46e-12!33;CL:0000404!1.46e-12!33;CL:0000221!2.17e-12!44;CL:0000133!2.17e-12!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.85e-14,23;CL:0000337,1.85e-14,23;CL:0002319,1.10e-12,43;CL:0000221,2.75e-12,44;CL:0000133,2.75e-12,44;CL:0000540,5.23e-12,33;CL:0000047,5.23e-12,33;CL:0000031,5.23e-12,33;CL:0000404,5.23e-12,33;CL:0000393,8.88e-11,39;CL:0000211,8.88e-11,39;CL:0002194,3.96e-09,4;CL:0000766,3.96e-09,4;CL:0000234,3.96e-09,4;CL:0000576,3.96e-09,4;CL:0000235,3.96e-09,4;CL:0000864,3.96e-09,4;CL:0002009,3.96e-09,4;CL:0000040,3.96e-09,4;CL:0000559,3.96e-09,4;CL:0002092,8.96e-08,3;CL:0002540,8.96e-08,3;CL:0000723,3.38e-07,91;CL:0000048,3.38e-07,91;CL:0002612,5.15e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.37e-17!75;UBERON:0001016!3.37e-17!75;UBERON:0001017!1.18e-16!73;UBERON:0005743!1.18e-16!73;UBERON:0004121!1.97e-15!102;UBERON:0000924!1.97e-15!102;UBERON:0006601!1.97e-15!102;UBERON:0002346!8.89e-13!71;UBERON:0003075!8.89e-13!71;UBERON:0007284!8.89e-13!71;UBERON:0002020!8.91e-12!34;UBERON:0001049!3.47e-11!52;UBERON:0005068!3.47e-11!52;UBERON:0006241!3.47e-11!52;UBERON:0007135!3.47e-11!52;UBERON:0000955!5.34e-10!50;UBERON:0006238!5.34e-10!50;UBERON:0002616!1.64e-09!49;UBERON:0000033!2.54e-09!63;UBERON:0002791!9.40e-09!29;UBERON:0003528!9.40e-09!29;UBERON:0001893!9.40e-09!29;UBERON:0003056!5.62e-08!49;UBERON:0003080!1.55e-07!40;UBERON:0002780!3.56e-07!39;UBERON:0001890!3.56e-07!39;UBERON:0006240!3.56e-07!39 | |ontology_enrichment_uberon=UBERON:0000073!3.37e-17!75;UBERON:0001016!3.37e-17!75;UBERON:0001017!1.18e-16!73;UBERON:0005743!1.18e-16!73;UBERON:0004121!1.97e-15!102;UBERON:0000924!1.97e-15!102;UBERON:0006601!1.97e-15!102;UBERON:0002346!8.89e-13!71;UBERON:0003075!8.89e-13!71;UBERON:0007284!8.89e-13!71;UBERON:0002020!8.91e-12!34;UBERON:0001049!3.47e-11!52;UBERON:0005068!3.47e-11!52;UBERON:0006241!3.47e-11!52;UBERON:0007135!3.47e-11!52;UBERON:0000955!5.34e-10!50;UBERON:0006238!5.34e-10!50;UBERON:0002616!1.64e-09!49;UBERON:0000033!2.54e-09!63;UBERON:0002791!9.40e-09!29;UBERON:0003528!9.40e-09!29;UBERON:0001893!9.40e-09!29;UBERON:0003056!5.62e-08!49;UBERON:0003080!1.55e-07!40;UBERON:0002780!3.56e-07!39;UBERON:0001890!3.56e-07!39;UBERON:0006240!3.56e-07!39 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.95e-25,73;UBERON:0001016,6.96e-24,75;UBERON:0000073,1.17e-17,54;UBERON:0004121,4.83e-17,95;UBERON:0000924,4.83e-17,95;UBERON:0006601,4.83e-17,95;UBERON:0002020,9.57e-16,34;UBERON:0001049,3.24e-15,52;UBERON:0005068,3.24e-15,52;UBERON:0006241,3.24e-15,52;UBERON:0007135,3.24e-15,52;UBERON:0002240,3.69e-12,6;UBERON:0005174,3.69e-12,6;UBERON:0001137,3.69e-12,6;UBERON:0002346,3.05e-11,64;UBERON:0003075,3.05e-11,64;UBERON:0007284,3.05e-11,64;UBERON:0001948,1.67e-10,5;UBERON:0002315,1.67e-10,5;UBERON:0003076,1.01e-09,12;UBERON:0003057,1.01e-09,12;UBERON:0000955,1.35e-09,47;UBERON:0006238,1.35e-09,47;UBERON:0003528,2.47e-09,29;UBERON:0002791,2.47e-09,29;UBERON:0001893,2.47e-09,29;UBERON:0010314,3.66e-09,92;UBERON:0010371,3.86e-09,73;UBERON:0002616,1.08e-08,46;UBERON:0002780,2.64e-08,39;UBERON:0001890,2.64e-08,39;UBERON:0006240,2.64e-08,39;UBERON:0003080,5.24e-08,40;UBERON:0002021,5.98e-08,10;UBERON:0000411,5.98e-08,10;UBERON:0001950,5.98e-08,10;UBERON:0002257,5.15e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0.699561878128147,0,0.137114433605739,0,0.425216450755349,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0.782391344348039,0,0.439372365468944,0,0,2.87505128729943,0,0,0,1.02903774414379,0.573066879877513,0.515672092277442,1.61853168687678,3.70293685490423,0.633831403506179,0,0,5.39939830368839,6.92206453796882,9.2362414942993,3.89480143673926,4.61061966385865,0.933206510776299,1.62007125998029,0.841299845405528,3.42781181284564,1.76694832761291,0.857435594504678,0.958454710182364,0.919218786610021,4.40463523997555,1.91531007127782,1.38245879930619,4.3522474950964,4.11694396210843,0.52091337055676,1.3959149950069,0.56276261003168,0.916789486660861,3.53554302568401,2.98980529678116,2.23679334990361,0.681535739998656,0.377857800533928,0,0,0,0,0.649776417447669,0,0.421333260395256,0.340860645156116,0.259786004602869,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0.890652834388949,1.21439728736295,1.21786191324856,0.230615497256059,0.452167921657868,1.41106448562846,0.251333182659351,0,0,0,0.485300549842228,0,0.484875253135222,0,0,1.67557365450764,0.255457055208591,0,0,0,0.898743836428936,0,1.13088916901578,1.04294592115366,0.255715457330331,1.45451631191692,1.1356888414743,0.305518091550949,0,0.252722758433675,0.631325567659422,0,0.459804208866946,0.540186389416048,0.452114453507145,0.544291993210623,0.2562274405697,0.468508622798644,0,0.215567992932842,0.189106080167819,0.527853372491847,1.09597866213787,0,0,0.205782136407943,0,0,0,0,0,0,0,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0,0.146199987425332,0.219550115291051,0,0.210289948564127,1.74937841044784,0,0,0.426576501070468,0.232236671860439,0.38660238396628,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.19496408711912,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0.166845105716094,0,0.224862112384854,0,0,0.50925170356284,0,0.162135226775035,0.274561413188081,4.31304619582064,0,0.312037673114561,0.252578877947112,0.538192240565737,1.4473305640901,0.184753190166605,0.189491411770485,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0,0.157635144106191,0.221464689648775,0.159454768657487,0.491589944147214,0.345369963731791,0.144649058581512,3.01582567878545,2.71952841909355,0.491764273019036,0,1.76605648986571,0.468846746368813,0.327869890753351,0.252470927204373,0,0,0.430846795465598,0.238968797952552,0.891194696329576,0.283076530788832,1.21443210502468,0.292255857911312,1.97643888973262,1.60660658210904,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0.242780636154981,0.302323556964751,0.754420319023592,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0.177340233642274,0,0.329098041204242,0,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0.291480836629851,1.8542530201051,0.854354403989263,0.206386867963223,0,0,0.27338845544205,0,0,0,0,0,0.158167996790568,0,0,0.209088296014469,0.436725127492355,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0.448549638131936,0.496375471371293,0,0.258319646955462,0.168956125490778,0.234714477291508,0,0,0,0,0.948033361884535,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,0.772758376128762,0.375364950902364,0,0,0,0.564751842617067,1.38097570952153,1.14579102687879,1.89038500578056,1.37016503954128,2.2661816921691,0,1.35096360967266,1.35942722695261,0,0.31136204275253,0.798049746802062,0,0.729320151204882,0.419226325255965,0.367687016900028,0.666740183404846,0.824140228955577,0,0.252697211763798,0.50695859978048,0.754505365544305,0.280924522409647,0.384150914429216,0.631790158511746,1.42888107384922,0.927074607558844,0.192909220463705,0,0.588795680537589,0.685738504770831,0.177475806159338,0.238436189947321,0.872078499793971,0.0941093804153306,0.338458431566706,0.914639864363863,0.526139422875686,0.407412341537585,0,0.118635018124174,0.591026894253381,0,0.464810523557898,0,0.249810577937946,0.467863216890817,0.214871054048298,0.765153328275374,0.220591419119515,0.231867835620421 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0.699561878128147,0,0.137114433605739,0,0.425216450755349,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0,0.782391344348039,0,0.439372365468944,0,0,2.87505128729943,0,0,0,1.02903774414379,0.573066879877513,0.515672092277442,1.61853168687678,3.70293685490423,0.633831403506179,0,0,5.39939830368839,6.92206453796882,9.2362414942993,3.89480143673926,4.61061966385865,0.933206510776299,1.62007125998029,0.841299845405528,3.42781181284564,1.76694832761291,0.857435594504678,0.958454710182364,0.919218786610021,4.40463523997555,1.91531007127782,1.38245879930619,4.3522474950964,4.11694396210843,0.52091337055676,1.3959149950069,0.56276261003168,0.916789486660861,3.53554302568401,2.98980529678116,2.23679334990361,0.681535739998656,0.377857800533928,0,0,0,0,0.649776417447669,0,0.421333260395256,0.340860645156116,0.259786004602869,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0.890652834388949,1.21439728736295,1.21786191324856,0.230615497256059,0.452167921657868,1.41106448562846,0.251333182659351,0,0,0,0.485300549842228,0,0.484875253135222,0,0,1.67557365450764,0.255457055208591,0,0,0,0.898743836428936,0,1.13088916901578,1.04294592115366,0.255715457330331,1.45451631191692,1.1356888414743,0.305518091550949,0,0.252722758433675,0.631325567659422,0,0.459804208866946,0.540186389416048,0.452114453507145,0.544291993210623,0.2562274405697,0.468508622798644,0,0.215567992932842,0.189106080167819,0.527853372491847,1.09597866213787,0,0,0.205782136407943,0,0,0,0,0,0,0,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0,0.146199987425332,0.219550115291051,0,0.210289948564127,1.74937841044784,0,0,0.426576501070468,0.232236671860439,0.38660238396628,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.19496408711912,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0.166845105716094,0,0.224862112384854,0,0,0.50925170356284,0,0.162135226775035,0.274561413188081,4.31304619582064,0,0.312037673114561,0.252578877947112,0.538192240565737,1.4473305640901,0.184753190166605,0.189491411770485,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0,0.157635144106191,0.221464689648775,0.159454768657487,0.491589944147214,0.345369963731791,0.144649058581512,3.01582567878545,2.71952841909355,0.491764273019036,0,1.76605648986571,0.468846746368813,0.327869890753351,0.252470927204373,0,0,0.430846795465598,0.238968797952552,0.891194696329576,0.283076530788832,1.21443210502468,0.292255857911312,1.97643888973262,1.60660658210904,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0.242780636154981,0.302323556964751,0.754420319023592,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0.177340233642274,0,0.329098041204242,0,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0.291480836629851,1.8542530201051,0.854354403989263,0.206386867963223,0,0,0.27338845544205,0,0,0,0,0,0.158167996790568,0,0,0.209088296014469,0.436725127492355,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0.448549638131936,0.496375471371293,0,0.258319646955462,0.168956125490778,0.234714477291508,0,0,0,0,0.948033361884535,0.202725215290164,0,0,0,0.198681354781265,0,0,0.100966449948148,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,0.772758376128762,0.375364950902364,0,0,0,0.564751842617067,1.38097570952153,1.14579102687879,1.89038500578056,1.37016503954128,2.2661816921691,0,1.35096360967266,1.35942722695261,0,0.31136204275253,0.798049746802062,0,0.729320151204882,0.419226325255965,0.367687016900028,0.666740183404846,0.824140228955577,0,0.252697211763798,0.50695859978048,0.754505365544305,0.280924522409647,0.384150914429216,0.631790158511746,1.42888107384922,0.927074607558844,0.192909220463705,0,0.588795680537589,0.685738504770831,0.177475806159338,0.238436189947321,0.872078499793971,0.0941093804153306,0.338458431566706,0.914639864363863,0.526139422875686,0.407412341537585,0,0.118635018124174,0.591026894253381,0,0.464810523557898,0,0.249810577937946,0.467863216890817,0.214871054048298,0.765153328275374,0.220591419119515,0.231867835620421 | ||
|short_description=p5@Sdc3 | |short_description=p5@Sdc3 | ||
}} | }} |
Latest revision as of 10:07, 26 September 2015
Short description: | p5@Sdc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Sdc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1801 |
Association with transcript: | 0bp_to_ENSMUST00000146093_5end |
EntrezGene: | Sdc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.85e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-14 | 23 |
neural cell | 1.10e-12 | 43 |
ectodermal cell | 2.75e-12 | 44 |
neurectodermal cell | 2.75e-12 | 44 |
neuron | 5.23e-12 | 33 |
neuronal stem cell | 5.23e-12 | 33 |
neuroblast | 5.23e-12 | 33 |
electrically signaling cell | 5.23e-12 | 33 |
electrically responsive cell | 8.88e-11 | 39 |
electrically active cell | 8.88e-11 | 39 |
monopoietic cell | 3.96e-09 | 4 |
myeloid leukocyte | 3.96e-09 | 4 |
phagocyte | 3.96e-09 | 4 |
monocyte | 3.96e-09 | 4 |
macrophage | 3.96e-09 | 4 |
tissue-resident macrophage | 3.96e-09 | 4 |
macrophage dendritic cell progenitor | 3.96e-09 | 4 |
monoblast | 3.96e-09 | 4 |
promonocyte | 3.96e-09 | 4 |
bone marrow cell | 8.96e-08 | 3 |
mesenchymal stem cell of the bone marrow | 8.96e-08 | 3 |
somatic stem cell | 3.38e-07 | 91 |
multi fate stem cell | 3.38e-07 | 91 |
neuron of the ventral spinal cord | 5.15e-07 | 3 |