FFCP PHASE1:Mm9::chr7:53039056..53039102,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=381983|HGNC=|MCL_coexpression_id=13|UniProt=E9QNZ5|association_with_transcript=-5bp_to_ENSMUST00000118564_5end|description=CAGE_peak_3_at_Lmtk3_5end|id=chr7:53039056..53039102,+|ontology_enrichment_celltype=CL:0000117!1.21e-15!23;CL:0000337!1.21e-15!23;CL:0000540!1.61e-13!33;CL:0000047!1.61e-13!33;CL:0000031!1.61e-13!33;CL:0000404!1.61e-13!33;CL:0000393!6.38e-10!39;CL:0000211!6.38e-10!39;CL:0002319!1.09e-09!43;CL:0000221!1.15e-09!44;CL:0000133!1.15e-09!44;CL:0000055!5.92e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.05e-24,23;CL:0000337,7.05e-24,23;CL:0000540,1.84e-15,33;CL:0000047,1.84e-15,33;CL:0000031,1.84e-15,33;CL:0000404,1.84e-15,33;CL:0000393,6.74e-12,39;CL:0000211,6.74e-12,39;CL:0002319,4.19e-10,43;CL:0000221,1.04e-09,44;CL:0000133,1.04e-09,44;CL:0002609,5.54e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.27e-27!73;UBERON:0005743!2.27e-27!73;UBERON:0002346!1.78e-26!71;UBERON:0003075!1.78e-26!71;UBERON:0007284!1.78e-26!71;UBERON:0000073!2.00e-26!75;UBERON:0001016!2.00e-26!75;UBERON:0000033!2.91e-25!63;UBERON:0001049!3.42e-25!52;UBERON:0005068!3.42e-25!52;UBERON:0006241!3.42e-25!52;UBERON:0007135!3.42e-25!52;UBERON:0000955!3.66e-24!50;UBERON:0006238!3.66e-24!50;UBERON:0004121!8.38e-24!102;UBERON:0000924!8.38e-24!102;UBERON:0006601!8.38e-24!102;UBERON:0002616!2.59e-23!49;UBERON:0003056!7.62e-23!49;UBERON:0002020!4.19e-21!34;UBERON:0003080!3.34e-20!40;UBERON:0002780!1.34e-19!39;UBERON:0001890!1.34e-19!39;UBERON:0006240!1.34e-19!39;UBERON:0002791!4.47e-18!29;UBERON:0003528!4.47e-18!29;UBERON:0001893!4.47e-18!29;UBERON:0007811!1.35e-17!86;UBERON:0000153!2.13e-16!94;UBERON:0000956!9.21e-13!21;UBERON:0001869!9.21e-13!21;UBERON:0000203!9.21e-13!21;UBERON:0002619!6.08e-10!17;UBERON:0002021!1.14e-08!10;UBERON:0000411!1.14e-08!10;UBERON:0001950!1.14e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.25e-33,34;UBERON:0000073,1.33e-33,54;UBERON:0001049,1.47e-31,52;UBERON:0005068,1.47e-31,52;UBERON:0006241,1.47e-31,52;UBERON:0007135,1.47e-31,52;UBERON:0002346,9.21e-31,64;UBERON:0003075,9.21e-31,64;UBERON:0007284,9.21e-31,64;UBERON:0001017,7.60e-30,73;UBERON:0003528,8.41e-29,29;UBERON:0002791,8.41e-29,29;UBERON:0001893,8.41e-29,29;UBERON:0001016,1.29e-28,75;UBERON:0000955,2.32e-27,47;UBERON:0006238,2.32e-27,47;UBERON:0002616,3.98e-26,46;UBERON:0010371,4.46e-25,73;UBERON:0003080,1.17e-24,40;UBERON:0003056,1.52e-24,49;UBERON:0004121,2.88e-24,95;UBERON:0000924,2.88e-24,95;UBERON:0006601,2.88e-24,95;UBERON:0002780,9.71e-24,39;UBERON:0001890,9.71e-24,39;UBERON:0006240,9.71e-24,39;UBERON:0000956,2.55e-20,21;UBERON:0001869,2.55e-20,21;UBERON:0000203,2.55e-20,21;UBERON:0010314,7.97e-17,92;UBERON:0002619,8.24e-16,17;UBERON:0002021,8.09e-13,10;UBERON:0000411,8.09e-13,10;UBERON:0001950,8.09e-13,10;UBERON:0002420,1.77e-09,8;UBERON:0007245,1.77e-09,8;UBERON:0010009,1.77e-09,8;UBERON:0010011,1.77e-09,8;UBERON:0000454,1.77e-09,8;UBERON:0000025,2.12e-07,114;UBERON:0003076,2.91e-07,12;UBERON:0003057,2.91e-07,12;UBERON:0000369,3.46e-07,5;UBERON:0002435,3.46e-07,5;UBERON:0000204,3.46e-07,5;UBERON:0010082,3.46e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0.680346321208558,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0.336093799142464,0,0,0,9.71119012126069,10.0508286061686,9.50747105259269,0,0,0,0,0,0,0.384218305321555,7.8804105354443,11.2054928815303,9.04397333810943,2.28520787523043,2.42955395046775,7.96190194897201,8.05101956553185,13.7882817991503,2.20231761998777,2.42605942361857,3.5329502648936,10.9465618816061,11.2529801630964,6.25096044668112,2.23346399201105,3.37657566019008,2.90316670775939,7.66034322231536,5.12538050876771,6.71038004971082,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0,0.173485326766136,0,0,0.301445281105245,0.23517741427141,0.251333182659351,0,0,0,0,0,0.484875253135222,0,4.09893115816166,4.1889341362691,0,0,0,0,3.59497534571574,9.60751265919116,13.3193613239636,12.3415267336516,8.95004100656157,4.77912502486988,6.65189178577806,0.101839363850316,0,0,0.631325567659422,0.260240885925407,0.459804208866946,0.540186389416048,2.56198190320716,1.56483948048054,1.0249097622788,1.49922759295566,1.03481348295606,0,0.189106080167819,0.175951124163949,0,0.834141747676794,0.696504333044333,0,0.59710280045548,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,13.6688466566683,11.216602749342,0,0,0,0.232236671860439,0.128867461322093,0,0.444756087689741,0,0,0,0,0,0.19496408711912,0,0,0,0,0.456994050438915,0,0,0,0.210407459670956,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325929952884052,0,0,0.335012514883631,0,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.9266070798535,1.40654023910644,0,0,1.26203287766503,0.390438744296638,0.430846795465598,0,0.445597348164788,0,0.404810701674894,0.584511715822624,0,12.8528526568723,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0.590603785761546,0.307435147943927,0,0,0,0,0,0,1.36175842301515,0.36012218806262,0.776152102696527,0,0.532020700926821,0.535106452806212,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0.161464426695906,0,0.238744688006273,0,0.291480836629851,1.48340241608408,0,0,0,0,0,0,0,0,0.276399947608848,0,0.316335993581135,0.813277868507395,0.324016022465404,0,0,0.404593039154462,0,0,0,0,0.56369293868419,0.299033092087958,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0.483168241652012,0,0,0.202725215290164,0.102710957164827,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,10.7302850097243,9.66682996665071,9.73922372846974,9.10821866421544,14.3867329151835,12.8416962556249,9.45031500324528,10.3573876741571,8.60970577069989,9.83744592328458,0.31136204275253,0.399024873401031,0.853668028770671,1.94485373654635,0.209613162627982,1.65459157605013,2.22246727801615,2.26638562962784,1.92551525755089,1.01078884705519,1.2673964994512,3.01802146217722,1.87283014939765,2.11283002936069,1.78049953762401,0.952587382566147,2.20180219295225,1.92909220463705,1.23625770240992,1.61918812147837,2.40008476669791,1.77475806159337,1.43061713968393,2.61623549938191,1.78807822789128,1.52306294205018,2.0122077016005,2.36762740294059,0.950628796921032,4.48913817326191,1.30498519936592,1.77308068276014,0.818462086339379,1.23949472948773,1.92906610981141,4.99621155875892,1.40358965067245,1.07435527024149,0.57386499620653,0,0.231867835620421|short_description=p3@Lmtk3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=381983 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=E9QNZ5 | |||
|association_with_transcript=-5bp_to_ENSMUST00000118564_5end | |||
|cluster_id=chr7:53039056..53039102,+ | |||
|description=CAGE_peak_3_at_Lmtk3_5end | |||
|id=chr7:53039056..53039102,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.21e-15!23;CL:0000337!1.21e-15!23;CL:0000540!1.61e-13!33;CL:0000047!1.61e-13!33;CL:0000031!1.61e-13!33;CL:0000404!1.61e-13!33;CL:0000393!6.38e-10!39;CL:0000211!6.38e-10!39;CL:0002319!1.09e-09!43;CL:0000221!1.15e-09!44;CL:0000133!1.15e-09!44;CL:0000055!5.92e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.05e-24,23;CL:0000337,7.05e-24,23;CL:0000540,1.84e-15,33;CL:0000047,1.84e-15,33;CL:0000031,1.84e-15,33;CL:0000404,1.84e-15,33;CL:0000393,6.74e-12,39;CL:0000211,6.74e-12,39;CL:0002319,4.19e-10,43;CL:0000221,1.04e-09,44;CL:0000133,1.04e-09,44;CL:0002609,5.54e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.27e-27!73;UBERON:0005743!2.27e-27!73;UBERON:0002346!1.78e-26!71;UBERON:0003075!1.78e-26!71;UBERON:0007284!1.78e-26!71;UBERON:0000073!2.00e-26!75;UBERON:0001016!2.00e-26!75;UBERON:0000033!2.91e-25!63;UBERON:0001049!3.42e-25!52;UBERON:0005068!3.42e-25!52;UBERON:0006241!3.42e-25!52;UBERON:0007135!3.42e-25!52;UBERON:0000955!3.66e-24!50;UBERON:0006238!3.66e-24!50;UBERON:0004121!8.38e-24!102;UBERON:0000924!8.38e-24!102;UBERON:0006601!8.38e-24!102;UBERON:0002616!2.59e-23!49;UBERON:0003056!7.62e-23!49;UBERON:0002020!4.19e-21!34;UBERON:0003080!3.34e-20!40;UBERON:0002780!1.34e-19!39;UBERON:0001890!1.34e-19!39;UBERON:0006240!1.34e-19!39;UBERON:0002791!4.47e-18!29;UBERON:0003528!4.47e-18!29;UBERON:0001893!4.47e-18!29;UBERON:0007811!1.35e-17!86;UBERON:0000153!2.13e-16!94;UBERON:0000956!9.21e-13!21;UBERON:0001869!9.21e-13!21;UBERON:0000203!9.21e-13!21;UBERON:0002619!6.08e-10!17;UBERON:0002021!1.14e-08!10;UBERON:0000411!1.14e-08!10;UBERON:0001950!1.14e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.25e-33,34;UBERON:0000073,1.33e-33,54;UBERON:0001049,1.47e-31,52;UBERON:0005068,1.47e-31,52;UBERON:0006241,1.47e-31,52;UBERON:0007135,1.47e-31,52;UBERON:0002346,9.21e-31,64;UBERON:0003075,9.21e-31,64;UBERON:0007284,9.21e-31,64;UBERON:0001017,7.60e-30,73;UBERON:0003528,8.41e-29,29;UBERON:0002791,8.41e-29,29;UBERON:0001893,8.41e-29,29;UBERON:0001016,1.29e-28,75;UBERON:0000955,2.32e-27,47;UBERON:0006238,2.32e-27,47;UBERON:0002616,3.98e-26,46;UBERON:0010371,4.46e-25,73;UBERON:0003080,1.17e-24,40;UBERON:0003056,1.52e-24,49;UBERON:0004121,2.88e-24,95;UBERON:0000924,2.88e-24,95;UBERON:0006601,2.88e-24,95;UBERON:0002780,9.71e-24,39;UBERON:0001890,9.71e-24,39;UBERON:0006240,9.71e-24,39;UBERON:0000956,2.55e-20,21;UBERON:0001869,2.55e-20,21;UBERON:0000203,2.55e-20,21;UBERON:0010314,7.97e-17,92;UBERON:0002619,8.24e-16,17;UBERON:0002021,8.09e-13,10;UBERON:0000411,8.09e-13,10;UBERON:0001950,8.09e-13,10;UBERON:0002420,1.77e-09,8;UBERON:0007245,1.77e-09,8;UBERON:0010009,1.77e-09,8;UBERON:0010011,1.77e-09,8;UBERON:0000454,1.77e-09,8;UBERON:0000025,2.12e-07,114;UBERON:0003076,2.91e-07,12;UBERON:0003057,2.91e-07,12;UBERON:0000369,3.46e-07,5;UBERON:0002435,3.46e-07,5;UBERON:0000204,3.46e-07,5;UBERON:0010082,3.46e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.140788722151667,0,0.171217968225505,0,0,0,0,0,0,0,0,0,0.680346321208558,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0.336093799142464,0,0,0,9.71119012126069,10.0508286061686,9.50747105259269,0,0,0,0,0,0,0.384218305321555,7.8804105354443,11.2054928815303,9.04397333810943,2.28520787523043,2.42955395046775,7.96190194897201,8.05101956553185,13.7882817991503,2.20231761998777,2.42605942361857,3.5329502648936,10.9465618816061,11.2529801630964,6.25096044668112,2.23346399201105,3.37657566019008,2.90316670775939,7.66034322231536,5.12538050876771,6.71038004971082,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0,0.173485326766136,0,0,0.301445281105245,0.23517741427141,0.251333182659351,0,0,0,0,0,0.484875253135222,0,4.09893115816166,4.1889341362691,0,0,0,0,3.59497534571574,9.60751265919116,13.3193613239636,12.3415267336516,8.95004100656157,4.77912502486988,6.65189178577806,0.101839363850316,0,0,0.631325567659422,0.260240885925407,0.459804208866946,0.540186389416048,2.56198190320716,1.56483948048054,1.0249097622788,1.49922759295566,1.03481348295606,0,0.189106080167819,0.175951124163949,0,0.834141747676794,0.696504333044333,0,0.59710280045548,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,13.6688466566683,11.216602749342,0,0,0,0.232236671860439,0.128867461322093,0,0.444756087689741,0,0,0,0,0,0.19496408711912,0,0,0,0,0.456994050438915,0,0,0,0.210407459670956,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325929952884052,0,0,0.335012514883631,0,0,0.157635144106191,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.9266070798535,1.40654023910644,0,0,1.26203287766503,0.390438744296638,0.430846795465598,0,0.445597348164788,0,0.404810701674894,0.584511715822624,0,12.8528526568723,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0.590603785761546,0.307435147943927,0,0,0,0,0,0,1.36175842301515,0.36012218806262,0.776152102696527,0,0.532020700926821,0.535106452806212,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0.161464426695906,0,0.238744688006273,0,0.291480836629851,1.48340241608408,0,0,0,0,0,0,0,0,0.276399947608848,0,0.316335993581135,0.813277868507395,0.324016022465404,0,0,0.404593039154462,0,0,0,0,0.56369293868419,0.299033092087958,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0.483168241652012,0,0,0.202725215290164,0.102710957164827,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,10.7302850097243,9.66682996665071,9.73922372846974,9.10821866421544,14.3867329151835,12.8416962556249,9.45031500324528,10.3573876741571,8.60970577069989,9.83744592328458,0.31136204275253,0.399024873401031,0.853668028770671,1.94485373654635,0.209613162627982,1.65459157605013,2.22246727801615,2.26638562962784,1.92551525755089,1.01078884705519,1.2673964994512,3.01802146217722,1.87283014939765,2.11283002936069,1.78049953762401,0.952587382566147,2.20180219295225,1.92909220463705,1.23625770240992,1.61918812147837,2.40008476669791,1.77475806159337,1.43061713968393,2.61623549938191,1.78807822789128,1.52306294205018,2.0122077016005,2.36762740294059,0.950628796921032,4.48913817326191,1.30498519936592,1.77308068276014,0.818462086339379,1.23949472948773,1.92906610981141,4.99621155875892,1.40358965067245,1.07435527024149,0.57386499620653,0,0.231867835620421 | |||
|short_description=p3@Lmtk3 | |||
}} |
Latest revision as of 21:53, 26 September 2015
Short description: | p3@Lmtk3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lmtk3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -5bp_to_ENSMUST00000118564_5end |
EntrezGene: | Lmtk3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.05e-24 | 23 |
neuroblast (sensu Vertebrata) | 7.05e-24 | 23 |
neuron | 1.84e-15 | 33 |
neuronal stem cell | 1.84e-15 | 33 |
neuroblast | 1.84e-15 | 33 |
electrically signaling cell | 1.84e-15 | 33 |
electrically responsive cell | 6.74e-12 | 39 |
electrically active cell | 6.74e-12 | 39 |
neural cell | 4.19e-10 | 43 |
ectodermal cell | 1.04e-09 | 44 |
neurectodermal cell | 1.04e-09 | 44 |
neuron of cerebral cortex | 5.54e-08 | 6 |