FFCP PHASE1:Mm9::chr6:54516493..54516502,-: Difference between revisions
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{{FFCP|EntrezGene=69938|HGNC=|MCL_coexpression_id=13|UniProt=Q9CZC8|association_with_transcript=-10bp_to_ENSMUST00000019268_5end|description=CAGE_peak_5_at_Scrn1_5end|id=chr6:54516493..54516502,-|ontology_enrichment_celltype=CL:0000221!8.03e-18!44;CL:0000133!8.03e-18!44;CL:0002319!2.60e-17!43;CL:0000117!8.55e-17!23;CL:0000337!8.55e-17!23;CL:0000055!4.56e-15!50;CL:0000540!6.71e-14!33;CL:0000047!6.71e-14!33;CL:0000031!6.71e-14!33;CL:0000404!6.71e-14!33;CL:0000393!3.24e-12!39;CL:0000211!3.24e-12!39;CL:0002321!9.07e-08!70;CL:0000220!9.07e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,8.29e-22,23;CL:0000337,8.29e-22,23;CL:0002319,6.12e-15,43;CL:0000221,1.66e-14,44;CL:0000133,1.66e-14,44;CL:0000540,3.63e-14,33;CL:0000047,3.63e-14,33;CL:0000031,3.63e-14,33;CL:0000404,3.63e-14,33;CL:0000393,1.80e-11,39;CL:0000211,1.80e-11,39;CL:0002610,7.80e-09,3;CL:0002612,1.11e-08,3;CL:0002614,6.26e-08,3;CL:0002321,1.23e-07,70;CL:0002608,1.36e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.61e-30!75;UBERON:0001016!2.61e-30!75;UBERON:0001017!3.47e-29!73;UBERON:0005743!3.47e-29!73;UBERON:0004121!6.84e-28!102;UBERON:0000924!6.84e-28!102;UBERON:0006601!6.84e-28!102;UBERON:0002346!2.09e-25!71;UBERON:0003075!2.09e-25!71;UBERON:0007284!2.09e-25!71;UBERON:0001049!2.45e-25!52;UBERON:0005068!2.45e-25!52;UBERON:0006241!2.45e-25!52;UBERON:0007135!2.45e-25!52;UBERON:0000033!1.36e-24!63;UBERON:0000955!1.16e-23!50;UBERON:0006238!1.16e-23!50;UBERON:0002616!7.09e-23!49;UBERON:0002020!1.85e-21!34;UBERON:0003056!2.27e-18!49;UBERON:0002791!3.05e-17!29;UBERON:0003528!3.05e-17!29;UBERON:0001893!3.05e-17!29;UBERON:0003080!8.34e-17!40;UBERON:0002780!5.71e-16!39;UBERON:0001890!5.71e-16!39;UBERON:0006240!5.71e-16!39;UBERON:0007811!6.10e-13!86;UBERON:0000956!2.54e-11!21;UBERON:0001869!2.54e-11!21;UBERON:0000203!2.54e-11!21;UBERON:0000153!2.24e-10!94;UBERON:0003076!2.35e-09!12;UBERON:0003057!2.35e-09!12;UBERON:0002619!9.52e-09!17;UBERON:0000025!2.62e-07!114;UBERON:0002420!2.62e-07!8;UBERON:0007245!2.62e-07!8;UBERON:0010009!2.62e-07!8;UBERON:0010011!2.62e-07!8;UBERON:0000454!2.62e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.54e-40,54;UBERON:0001017,8.16e-37,73;UBERON:0001016,1.17e-35,75;UBERON:0001049,1.18e-35,52;UBERON:0005068,1.18e-35,52;UBERON:0006241,1.18e-35,52;UBERON:0007135,1.18e-35,52;UBERON:0000955,2.55e-28,47;UBERON:0006238,2.55e-28,47;UBERON:0002020,4.00e-28,34;UBERON:0002346,8.33e-28,64;UBERON:0003075,8.33e-28,64;UBERON:0007284,8.33e-28,64;UBERON:0004121,9.44e-27,95;UBERON:0000924,9.44e-27,95;UBERON:0006601,9.44e-27,95;UBERON:0002616,1.23e-26,46;UBERON:0010371,1.31e-23,73;UBERON:0003528,3.55e-21,29;UBERON:0002791,3.55e-21,29;UBERON:0001893,3.55e-21,29;UBERON:0003080,1.32e-20,40;UBERON:0002780,7.24e-19,39;UBERON:0001890,7.24e-19,39;UBERON:0006240,7.24e-19,39;UBERON:0010314,1.93e-17,92;UBERON:0003076,1.21e-16,12;UBERON:0003057,1.21e-16,12;UBERON:0003056,5.56e-16,49;UBERON:0002619,2.91e-15,17;UBERON:0000956,2.51e-14,21;UBERON:0001869,2.51e-14,21;UBERON:0000203,2.51e-14,21;UBERON:0000025,7.34e-13,114;UBERON:0004111,1.32e-11,122;UBERON:0002240,6.05e-11,6;UBERON:0005174,6.05e-11,6;UBERON:0001137,6.05e-11,6;UBERON:0002950,2.79e-10,4;UBERON:0001891,2.79e-10,4;UBERON:0009616,2.79e-10,4;UBERON:0010286,2.79e-10,4;UBERON:0011216,1.36e-09,194;UBERON:0004684,7.80e-09,3;UBERON:0002275,7.80e-09,3;UBERON:0002257,1.11e-08,3;UBERON:0002021,1.37e-08,10;UBERON:0000411,1.37e-08,10;UBERON:0001950,1.37e-08,10;UBERON:0001948,1.39e-08,5;UBERON:0002315,1.39e-08,5;UBERON:0001954,3.56e-08,7;UBERON:0003022,3.56e-08,7;UBERON:0002421,3.56e-08,7;UBERON:0000349,3.56e-08,7;UBERON:0002600,3.56e-08,7;UBERON:0002420,4.40e-08,8;UBERON:0007245,4.40e-08,8;UBERON:0010009,4.40e-08,8;UBERON:0010011,4.40e-08,8;UBERON:0000454,4.40e-08,8;UBERON:0002038,6.26e-08,3;UBERON:0009663,6.26e-08,3;UBERON:0009661,6.26e-08,3;UBERON:0000125,6.26e-08,3;UBERON:0002308,6.26e-08,3;UBERON:0004733,2.07e-07,6;UBERON:0004732,2.07e-07,6;UBERON:0002028,2.07e-07,6;UBERON:0007277,2.07e-07,6|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0,0,0.872100625521786,1.09843091367236,0.777719596297134,1.39986421625363,1.43752564364972,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0.889294796111139,0,0,0,0,0.384218305321555,0.725827286159344,0.675029691658453,1.47227472945967,1.42825492201902,0.883474163806454,1.22490799214954,1.24599112323707,1.83843757322004,2.20231761998777,2.042997409363,3.22573719838111,0.791317726381163,3.11057988248193,0.52091337055676,1.3959149950069,1.12552522006336,2.90316670775939,2.35702868378934,2.42031857358475,1.4911955666024,0.302904773332736,0.529000920747499,0,0,0,0,0,0,0,0.511290967734173,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0,0.593768556259299,0.173485326766136,0,0,0.150722640552623,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,2.34224637609238,3.35114730901528,0,0,0,0,2.24685959107234,0.457500602818626,4.27224797183739,0.869121600961382,1.79000820131231,1.24672826735736,2.10913641988085,0,0,0,0.210441855886474,0,0,0.360124259610698,0.150704817835715,0.340182495756639,0.512454881139399,0.374806898238915,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0.292399974850665,0.219550115291051,0.134206418760372,0.630869845692382,1.54356918568927,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.172684981865896,0.144649058581512,0,0,0.491764273019036,0,2.40825884981688,1.40654023910644,0,0,0,0.780877488593277,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,1.28528526568723,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0,0,0,0,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0,0,0,2.41052892613663,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0.387479470433193,0,0,0,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.84130094602871,1.14579102687879,1.71853182343688,0,0,0,2.2516060161211,1.35942722695261,3.10656187051092,0,0,0.170733605754134,0,0.419226325255965,0.367687016900028,0.222246727801615,0,0.962757628775446,0,0,0.188626341386076,0.280924522409647,0.128050304809739,0.17230640686684,0,0.347652977834566,0.578727661391115,0.412085900803307,0.294397840268795,0,0,0.238436189947321,0,0.188218760830661,0.338458431566706,0.548783918618318,0.263069711437843,0.271608227691724,0.561142271657738,0.355905054372522,0.0985044823755635,0,0.309873682371932,0.385813221962283,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0|short_description=p5@Scrn1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=69938 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CZC8 | |||
|association_with_transcript=-10bp_to_ENSMUST00000019268_5end | |||
|cluster_id=chr6:54516493..54516502,- | |||
|description=CAGE_peak_5_at_Scrn1_5end | |||
|id=chr6:54516493..54516502,- | |||
|ontology_enrichment_celltype=CL:0000221!8.03e-18!44;CL:0000133!8.03e-18!44;CL:0002319!2.60e-17!43;CL:0000117!8.55e-17!23;CL:0000337!8.55e-17!23;CL:0000055!4.56e-15!50;CL:0000540!6.71e-14!33;CL:0000047!6.71e-14!33;CL:0000031!6.71e-14!33;CL:0000404!6.71e-14!33;CL:0000393!3.24e-12!39;CL:0000211!3.24e-12!39;CL:0002321!9.07e-08!70;CL:0000220!9.07e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.29e-22,23;CL:0000337,8.29e-22,23;CL:0002319,6.12e-15,43;CL:0000221,1.66e-14,44;CL:0000133,1.66e-14,44;CL:0000540,3.63e-14,33;CL:0000047,3.63e-14,33;CL:0000031,3.63e-14,33;CL:0000404,3.63e-14,33;CL:0000393,1.80e-11,39;CL:0000211,1.80e-11,39;CL:0002610,7.80e-09,3;CL:0002612,1.11e-08,3;CL:0002614,6.26e-08,3;CL:0002321,1.23e-07,70;CL:0002608,1.36e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.61e-30!75;UBERON:0001016!2.61e-30!75;UBERON:0001017!3.47e-29!73;UBERON:0005743!3.47e-29!73;UBERON:0004121!6.84e-28!102;UBERON:0000924!6.84e-28!102;UBERON:0006601!6.84e-28!102;UBERON:0002346!2.09e-25!71;UBERON:0003075!2.09e-25!71;UBERON:0007284!2.09e-25!71;UBERON:0001049!2.45e-25!52;UBERON:0005068!2.45e-25!52;UBERON:0006241!2.45e-25!52;UBERON:0007135!2.45e-25!52;UBERON:0000033!1.36e-24!63;UBERON:0000955!1.16e-23!50;UBERON:0006238!1.16e-23!50;UBERON:0002616!7.09e-23!49;UBERON:0002020!1.85e-21!34;UBERON:0003056!2.27e-18!49;UBERON:0002791!3.05e-17!29;UBERON:0003528!3.05e-17!29;UBERON:0001893!3.05e-17!29;UBERON:0003080!8.34e-17!40;UBERON:0002780!5.71e-16!39;UBERON:0001890!5.71e-16!39;UBERON:0006240!5.71e-16!39;UBERON:0007811!6.10e-13!86;UBERON:0000956!2.54e-11!21;UBERON:0001869!2.54e-11!21;UBERON:0000203!2.54e-11!21;UBERON:0000153!2.24e-10!94;UBERON:0003076!2.35e-09!12;UBERON:0003057!2.35e-09!12;UBERON:0002619!9.52e-09!17;UBERON:0000025!2.62e-07!114;UBERON:0002420!2.62e-07!8;UBERON:0007245!2.62e-07!8;UBERON:0010009!2.62e-07!8;UBERON:0010011!2.62e-07!8;UBERON:0000454!2.62e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.54e-40,54;UBERON:0001017,8.16e-37,73;UBERON:0001016,1.17e-35,75;UBERON:0001049,1.18e-35,52;UBERON:0005068,1.18e-35,52;UBERON:0006241,1.18e-35,52;UBERON:0007135,1.18e-35,52;UBERON:0000955,2.55e-28,47;UBERON:0006238,2.55e-28,47;UBERON:0002020,4.00e-28,34;UBERON:0002346,8.33e-28,64;UBERON:0003075,8.33e-28,64;UBERON:0007284,8.33e-28,64;UBERON:0004121,9.44e-27,95;UBERON:0000924,9.44e-27,95;UBERON:0006601,9.44e-27,95;UBERON:0002616,1.23e-26,46;UBERON:0010371,1.31e-23,73;UBERON:0003528,3.55e-21,29;UBERON:0002791,3.55e-21,29;UBERON:0001893,3.55e-21,29;UBERON:0003080,1.32e-20,40;UBERON:0002780,7.24e-19,39;UBERON:0001890,7.24e-19,39;UBERON:0006240,7.24e-19,39;UBERON:0010314,1.93e-17,92;UBERON:0003076,1.21e-16,12;UBERON:0003057,1.21e-16,12;UBERON:0003056,5.56e-16,49;UBERON:0002619,2.91e-15,17;UBERON:0000956,2.51e-14,21;UBERON:0001869,2.51e-14,21;UBERON:0000203,2.51e-14,21;UBERON:0000025,7.34e-13,114;UBERON:0004111,1.32e-11,122;UBERON:0002240,6.05e-11,6;UBERON:0005174,6.05e-11,6;UBERON:0001137,6.05e-11,6;UBERON:0002950,2.79e-10,4;UBERON:0001891,2.79e-10,4;UBERON:0009616,2.79e-10,4;UBERON:0010286,2.79e-10,4;UBERON:0011216,1.36e-09,194;UBERON:0004684,7.80e-09,3;UBERON:0002275,7.80e-09,3;UBERON:0002257,1.11e-08,3;UBERON:0002021,1.37e-08,10;UBERON:0000411,1.37e-08,10;UBERON:0001950,1.37e-08,10;UBERON:0001948,1.39e-08,5;UBERON:0002315,1.39e-08,5;UBERON:0001954,3.56e-08,7;UBERON:0003022,3.56e-08,7;UBERON:0002421,3.56e-08,7;UBERON:0000349,3.56e-08,7;UBERON:0002600,3.56e-08,7;UBERON:0002420,4.40e-08,8;UBERON:0007245,4.40e-08,8;UBERON:0010009,4.40e-08,8;UBERON:0010011,4.40e-08,8;UBERON:0000454,4.40e-08,8;UBERON:0002038,6.26e-08,3;UBERON:0009663,6.26e-08,3;UBERON:0009661,6.26e-08,3;UBERON:0000125,6.26e-08,3;UBERON:0002308,6.26e-08,3;UBERON:0004733,2.07e-07,6;UBERON:0004732,2.07e-07,6;UBERON:0002028,2.07e-07,6;UBERON:0007277,2.07e-07,6 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0,0,0.872100625521786,1.09843091367236,0.777719596297134,1.39986421625363,1.43752564364972,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0.889294796111139,0,0,0,0,0.384218305321555,0.725827286159344,0.675029691658453,1.47227472945967,1.42825492201902,0.883474163806454,1.22490799214954,1.24599112323707,1.83843757322004,2.20231761998777,2.042997409363,3.22573719838111,0.791317726381163,3.11057988248193,0.52091337055676,1.3959149950069,1.12552522006336,2.90316670775939,2.35702868378934,2.42031857358475,1.4911955666024,0.302904773332736,0.529000920747499,0,0,0,0,0,0,0,0.511290967734173,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0,0.593768556259299,0.173485326766136,0,0,0.150722640552623,0,0.125666591329675,0,0.144599356919912,0,0.161766849947409,0,0,0,2.34224637609238,3.35114730901528,0,0,0,0,2.24685959107234,0.457500602818626,4.27224797183739,0.869121600961382,1.79000820131231,1.24672826735736,2.10913641988085,0,0,0,0.210441855886474,0,0,0.360124259610698,0.150704817835715,0.340182495756639,0.512454881139399,0.374806898238915,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0.292399974850665,0.219550115291051,0.134206418760372,0.630869845692382,1.54356918568927,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0.172684981865896,0.144649058581512,0,0,0.491764273019036,0,2.40825884981688,1.40654023910644,0,0,0,0.780877488593277,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0,1.28528526568723,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0,0,0,0,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0,0,0,2.41052892613663,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0.387479470433193,0,0,0,0.209718688851422,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.84130094602871,1.14579102687879,1.71853182343688,0,0,0,2.2516060161211,1.35942722695261,3.10656187051092,0,0,0.170733605754134,0,0.419226325255965,0.367687016900028,0.222246727801615,0,0.962757628775446,0,0,0.188626341386076,0.280924522409647,0.128050304809739,0.17230640686684,0,0.347652977834566,0.578727661391115,0.412085900803307,0.294397840268795,0,0,0.238436189947321,0,0.188218760830661,0.338458431566706,0.548783918618318,0.263069711437843,0.271608227691724,0.561142271657738,0.355905054372522,0.0985044823755635,0,0.309873682371932,0.385813221962283,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p5@Scrn1 | |||
}} |
Latest revision as of 13:58, 1 October 2015
Short description: | p5@Scrn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Scrn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -10bp_to_ENSMUST00000019268_5end |
EntrezGene: | Scrn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.29e-22 | 23 |
neuroblast (sensu Vertebrata) | 8.29e-22 | 23 |
neural cell | 6.12e-15 | 43 |
ectodermal cell | 1.66e-14 | 44 |
neurectodermal cell | 1.66e-14 | 44 |
neuron | 3.63e-14 | 33 |
neuronal stem cell | 3.63e-14 | 33 |
neuroblast | 3.63e-14 | 33 |
electrically signaling cell | 3.63e-14 | 33 |
electrically responsive cell | 1.80e-11 | 39 |
electrically active cell | 1.80e-11 | 39 |
raphe nuclei neuron | 7.80e-09 | 3 |
neuron of the ventral spinal cord | 1.11e-08 | 3 |
neuron of the substantia nigra | 6.26e-08 | 3 |
embryonic cell | 1.23e-07 | 70 |
hippocampal neuron | 1.36e-07 | 3 |