FFCP PHASE1:Mm9::chr1:83113335..83113351,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20297 | |EntrezGene=20297 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt=F8WHA7,O89093,Q642U4,Q54AI7 | |UniProt=F8WHA7,O89093,Q642U4,Q54AI7 | ||
|association_with_transcript=0bp_to_ENSMUST00000027351,ENSMUST00000113437,NM_001159738,NM_016960,uc007bsk.2,uc007bsl.2,uc007bsm.2_5end | |association_with_transcript=0bp_to_ENSMUST00000027351,ENSMUST00000113437,NM_001159738,NM_016960,uc007bsk.2,uc007bsl.2,uc007bsm.2_5end | ||
|cluster_id=chr1:83113335..83113351,+ | |||
|description=CAGE_peak_1_at_Ccl20_5end | |description=CAGE_peak_1_at_Ccl20_5end | ||
|id=chr1:83113335..83113351,+ | |id=chr1:83113335..83113351,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.51e-08!15;CL:0002563!4.16e-08!9;CL:0002251!4.16e-08!9 | |ontology_enrichment_celltype=CL:0002076!3.51e-08!15;CL:0002563!4.16e-08!9;CL:0002251!4.16e-08!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.42e-12,15;CL:0002563,2.55e-11,9;CL:0002251,2.55e-11,9;CL:0000066,7.02e-11,25;CL:0000223,3.71e-09,20;CL:0000239,2.63e-08,6;CL:0000677,2.63e-08,6;CL:0000584,2.63e-08,6;CL:0000075,6.58e-07,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!1.92e-18!128;UBERON:0001555!1.92e-18!128;UBERON:0007026!1.92e-18!128;UBERON:0004119!3.69e-18!130;UBERON:0000925!3.69e-18!130;UBERON:0006595!3.69e-18!130;UBERON:0000160!2.10e-17!43;UBERON:0004921!4.51e-17!126;UBERON:0004185!4.51e-17!126;UBERON:0005409!3.65e-15!59;UBERON:0000344!1.34e-12!15;UBERON:0001242!5.75e-11!13;UBERON:0000060!5.75e-11!13;UBERON:0001262!5.75e-11!13;UBERON:0004786!5.75e-11!13;UBERON:0003350!4.16e-08!9;UBERON:0004808!4.16e-08!9;UBERON:0001277!4.16e-08!9 | |ontology_enrichment_uberon=UBERON:0001007!1.92e-18!128;UBERON:0001555!1.92e-18!128;UBERON:0007026!1.92e-18!128;UBERON:0004119!3.69e-18!130;UBERON:0000925!3.69e-18!130;UBERON:0006595!3.69e-18!130;UBERON:0000160!2.10e-17!43;UBERON:0004921!4.51e-17!126;UBERON:0004185!4.51e-17!126;UBERON:0005409!3.65e-15!59;UBERON:0000344!1.34e-12!15;UBERON:0001242!5.75e-11!13;UBERON:0000060!5.75e-11!13;UBERON:0001262!5.75e-11!13;UBERON:0004786!5.75e-11!13;UBERON:0003350!4.16e-08!9;UBERON:0004808!4.16e-08!9;UBERON:0001277!4.16e-08!9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.41e-23,31;UBERON:0005409,2.28e-19,47;UBERON:0001007,2.93e-18,116;UBERON:0001555,2.93e-18,116;UBERON:0007026,2.93e-18,116;UBERON:0000344,5.23e-18,15;UBERON:0004119,1.20e-17,118;UBERON:0000925,1.20e-17,118;UBERON:0006595,1.20e-17,118;UBERON:0004921,1.51e-16,114;UBERON:0001242,1.42e-15,13;UBERON:0001262,1.42e-15,13;UBERON:0004786,1.42e-15,13;UBERON:0003350,2.55e-11,9;UBERON:0004808,2.55e-11,9;UBERON:0001277,2.55e-11,9;UBERON:0004923,2.89e-09,24;UBERON:0000485,9.40e-09,11;UBERON:0000072,1.39e-07,27 | |||
|phase1_expression=0,2611.38297536534,2559.37072156614,13.3084252975005,11.520601788766,849.804874417986,1240.71673420284,2.32421982194837,3.51971805379167,11.2350972634557,1.19852577757853,0.797721589953364,0,0,0,0,0,0,0,0,0.510259740906419,0,0,2195.09604072554,2658.1653397253,3459.747583793,4081.46991360723,2833.23123858675,11.0213583284697,7.05684363327806,1621.29349391159,0,0,0,18.7753552838328,5.31950865147176,20.8252743387616,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0,0,0.218025156380447,0,0.194429899074283,0,0,0,1.45072428402269,0,3.60163210450326,0.573066879877513,2.06268836910977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.151452386666368,0,1.15945795480671,0,0,0,0,0,2.24711072210803,0,0,0,0,0,2.54805239706646,0,8.22665955842614,5.06719730950197,14.1546844604139,5.36664234679582,16.3130866697718,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,14.9113408974498,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0.469052119962192,0.540186184383045,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,32.0506219494284,1.58670339998127,0,0.464473343720877,0.644337306610467,0.80673409849337,2.89091456998331,6.08722003560189,12.3377556001573,4.94096864172033,5.52937459360593,7.75930240960488,6.23885078781184,3.59527763461689,6.70027954611552,7.36822711041159,0,0.114248512609729,0,0.203651327845314,0.387904974335251,0,0,0.147610147979602,0.156998727841375,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0.287696137450811,0,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0.252578877947112,0,0,1.10851914099963,0,0,0,0,0.837531287209079,0.238043640886014,0.390267295715598,0.157635144106191,0.221464689648775,0.159454768657487,0.655453258862952,1.20879487306127,0.723245292907558,0,0,0,0.551873492609465,0,0,0,0,0.631016438832513,0,0,0,0,0,0.404810701674894,0.292255857911312,1.18586333383957,0,0,0.178065603667255,0,0.329940245945071,0,0.485561272309963,0.302323556964751,0.943025398779491,0.295301892880773,0.307435147943927,1.55056975900933,3.27180356529755,1.78248689192361,0,1.05418608574999,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,6.76033637060068,0.322928853391811,1.20625849856312,2.14870219205646,2.9545361954111,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,2.23651413839534,4.10420295122845,5.43629569637619,4.58561383866973,1.75323650300267,0.991841468704031,0,4.66613903850454,4.34937519160848,0,0.149516546043979,0,0,0,0,0,0,0,0,0,6.00421129193539,0,0,0.51968329191118,0.358053391334963,2.18549490259391,4.80781798079875,4.87375439676105,4.2405908978222,2.057583779685,4.33552596088414,11.402572046551,8.56285390598932,8.06450625052826,0,1.55390167361845,1.70456327558004,3.02192309455341,0,3.37828455812128,2.74727436400898,2.78678892802786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.888986911206461,1.23621034343337,0,0.505394423527595,1.2673964994512,0.188626341386076,0.37456602987953,0.704276676453562,0.746661096422973,0,0.463537303779422,1.15745532278223,1.23625770240992,1.17759136107518,0.342869252385415,0.70990322463735,0.953744759789284,0.145346416632329,0.376437521661322,0.423073039458382,0.365855945745545,0.789209134313529,0.135804113845862,1.12228454331548,1.06771516311757,0.29551344712669,0.409231043169689,0.464810523557898,0.771626443924566,0,1.40358965067245,2.36358159453128,0.57386499620653,0.882365676478062,0.231867835620421 | |phase1_expression=0,2611.38297536534,2559.37072156614,13.3084252975005,11.520601788766,849.804874417986,1240.71673420284,2.32421982194837,3.51971805379167,11.2350972634557,1.19852577757853,0.797721589953364,0,0,0,0,0,0,0,0,0.510259740906419,0,0,2195.09604072554,2658.1653397253,3459.747583793,4081.46991360723,2833.23123858675,11.0213583284697,7.05684363327806,1621.29349391159,0,0,0,18.7753552838328,5.31950865147176,20.8252743387616,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0,0,0.218025156380447,0,0.194429899074283,0,0,0,1.45072428402269,0,3.60163210450326,0.573066879877513,2.06268836910977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.151452386666368,0,1.15945795480671,0,0,0,0,0,2.24711072210803,0,0,0,0,0,2.54805239706646,0,8.22665955842614,5.06719730950197,14.1546844604139,5.36664234679582,16.3130866697718,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,14.9113408974498,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0.469052119962192,0.540186184383045,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,32.0506219494284,1.58670339998127,0,0.464473343720877,0.644337306610467,0.80673409849337,2.89091456998331,6.08722003560189,12.3377556001573,4.94096864172033,5.52937459360593,7.75930240960488,6.23885078781184,3.59527763461689,6.70027954611552,7.36822711041159,0,0.114248512609729,0,0.203651327845314,0.387904974335251,0,0,0.147610147979602,0.156998727841375,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0.287696137450811,0,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0.252578877947112,0,0,1.10851914099963,0,0,0,0,0.837531287209079,0.238043640886014,0.390267295715598,0.157635144106191,0.221464689648775,0.159454768657487,0.655453258862952,1.20879487306127,0.723245292907558,0,0,0,0.551873492609465,0,0,0,0,0.631016438832513,0,0,0,0,0,0.404810701674894,0.292255857911312,1.18586333383957,0,0,0.178065603667255,0,0.329940245945071,0,0.485561272309963,0.302323556964751,0.943025398779491,0.295301892880773,0.307435147943927,1.55056975900933,3.27180356529755,1.78248689192361,0,1.05418608574999,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,6.76033637060068,0.322928853391811,1.20625849856312,2.14870219205646,2.9545361954111,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,2.23651413839534,4.10420295122845,5.43629569637619,4.58561383866973,1.75323650300267,0.991841468704031,0,4.66613903850454,4.34937519160848,0,0.149516546043979,0,0,0,0,0,0,0,0,0,6.00421129193539,0,0,0.51968329191118,0.358053391334963,2.18549490259391,4.80781798079875,4.87375439676105,4.2405908978222,2.057583779685,4.33552596088414,11.402572046551,8.56285390598932,8.06450625052826,0,1.55390167361845,1.70456327558004,3.02192309455341,0,3.37828455812128,2.74727436400898,2.78678892802786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.888986911206461,1.23621034343337,0,0.505394423527595,1.2673964994512,0.188626341386076,0.37456602987953,0.704276676453562,0.746661096422973,0,0.463537303779422,1.15745532278223,1.23625770240992,1.17759136107518,0.342869252385415,0.70990322463735,0.953744759789284,0.145346416632329,0.376437521661322,0.423073039458382,0.365855945745545,0.789209134313529,0.135804113845862,1.12228454331548,1.06771516311757,0.29551344712669,0.409231043169689,0.464810523557898,0.771626443924566,0,1.40358965067245,2.36358159453128,0.57386499620653,0.882365676478062,0.231867835620421 | ||
|short_description=p1@Ccl20 | |short_description=p1@Ccl20 | ||
}} | }} |
Latest revision as of 16:20, 1 October 2015
Short description: | p1@Ccl20 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ccl20_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | 0bp_to_ENSMUST00000027351, ENSMUST00000113437, NM_001159738, NM_016960, uc007bsk.2, uc007bsl.2, uc007bsm.2_5end |
EntrezGene: | Ccl20 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.42e-12 | 15 |
intestinal epithelial cell | 2.55e-11 | 9 |
epithelial cell of alimentary canal | 2.55e-11 | 9 |
epithelial cell | 7.02e-11 | 25 |
endodermal cell | 3.71e-09 | 20 |
brush border epithelial cell | 2.63e-08 | 6 |
gut absorptive cell | 2.63e-08 | 6 |
enterocyte | 2.63e-08 | 6 |
columnar/cuboidal epithelial cell | 6.58e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.41e-23 | 31 |
gastrointestinal system | 2.28e-19 | 47 |
digestive system | 2.93e-18 | 116 |
digestive tract | 2.93e-18 | 116 |
primitive gut | 2.93e-18 | 116 |
mucosa | 5.23e-18 | 15 |
endoderm-derived structure | 1.20e-17 | 118 |
endoderm | 1.20e-17 | 118 |
presumptive endoderm | 1.20e-17 | 118 |
subdivision of digestive tract | 1.51e-16 | 114 |
intestinal mucosa | 1.42e-15 | 13 |
wall of intestine | 1.42e-15 | 13 |
gastrointestinal system mucosa | 1.42e-15 | 13 |
epithelium of mucosa | 2.55e-11 | 9 |
gastrointestinal system epithelium | 2.55e-11 | 9 |
intestinal epithelium | 2.55e-11 | 9 |
organ component layer | 2.89e-09 | 24 |
simple columnar epithelium | 9.40e-09 | 11 |
segment of respiratory tract | 1.39e-07 | 27 |