FF:10253-104C1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004676 | ||
|accession_numbers=CAGE;DRX008768;DRR009640;DRZ001065;DRZ002450;DRZ012415;DRZ013800 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002108,UBERON:0000160,UBERON:0000331,UBERON:0000483,UBERON:0002116,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0001204,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0001262,UBERON:0004786,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001168 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
| | |||
|ancestors_in_anatomy_facet=UBERON: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000998,FF:0000004,FF:0011274 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr3:3634145..3634161,+!p1@Hnf4g!2.69!492.72!Hnf4g;;chr10:80555320..80555378,-!p1@Creb3l3!2.29!222.79!Creb3l3;;chr2:163372884..163372904,+!p1@Hnf4a!2.24!173.14!Hnf4a;;chr5:148118639..148118715,-!p1@Cdx2!2.24!170.88!Cdx2;;chr10:88969376..88969395,-!p1@Nr1h4!1.98!94.76!Nr1h4;;chr6:86619104..86619119,-!p1@Mxd1!1.87!556.23!Mxd1;;chr2:163332558..163332596,+!p2@Hnf4a!1.81!64.27!Hnf4a;;chr16:38294860..38294924,-!p1@Nr1i2!1.80!62.00!Nr1i2;;chr1:137155026..137155042,-!p1@Elf3!1.74!298.66!Elf3;;chr3:3508024..3508069,+!p2@Hnf4g!1.68!47.38!Hnf4g;;chr17:27865882..27865901,-!p1@Spdef!1.66!44.61!Spdef;;chr2:103123925..103123959,-!p3@Ehf!1.63!41.84!Ehf;;chr15:97738692..97738747,-!p1@Vdr!1.62!214.73!Vdr;;chr18:61195843..61195864,-!p2@Cdx1!1.62!40.58!Cdx1;;chr5:148118840..148118857,-!p2@Cdx2!1.62!40.32!Cdx2;;chr5:120121169..120121171,+!p4@Tbx3!1.60!67.80!Tbx3;;chr2:180069370..180069409,-!p1@Gata5!1.60!45.11!Gata5;;chr2:173044380..173044432,-!p1@Zbp1!1.59!86.95!Zbp1;;chr18:61195865..61195880,-!p1@Cdx1!1.58!37.30!Cdx1;;chr6:64679112..64679126,+!p1@Atoh1!1.53!32.51!Atoh1;;chr2:173044357..173044377,-!p2@Zbp1!1.51!44.61!Zbp1;;chr8:77396591..77396639,+!p1@Isx!1.45!26.97!Isx;;chr15:35225845..35225867,+!p1@Osr2!1.43!63.76!Osr2;;chr14:99697871..99697934,+!p1@Klf5!1.39!450.88!Klf5;;chr6:39068163..39068176,-!p2@Parp12!1.39!43.10!Parp12;;chr2:103143336..103143367,-!p1@Ehf!1.37!36.29!Ehf;;chr5:135582751..135582788,+!p1@Mlxipl!1.35!83.93!Mlxipl;;chr19:5560600..5560617,-!p1@Ovol1!1.33!24.70!Ovol1;;chr5:148118792..148118806,-!p3@Cdx2!1.33!20.16!Cdx2;;chr8:123260252..123260264,+!p1@Irf8!1.31!132.06!Irf8;;chr14:63864056..63864102,-!p1@Gata4!1.31!33.27!Gata4;;chr7:19608891..19608895,-!p1@Foxa3!1.30!24.45!Foxa3;;chr11:70500401..70500460,-!p3@Camta2!1.30!19.15!Camta2;;chr4:124805061..124805087,-!p1@Zc3h12a!1.28!54.94!Zc3h12a;;chr5:115421065..115421088,-!p1@Hnf1a!1.28!17.89!Hnf1a;;chr1:194979315..194979359,+!p1@Irf6!1.27!104.84!Irf6;;chr9:31720843..31720888,-!p1@Barx2!1.27!19.41!Barx2;;chr8:77397095..77397127,+!p2@Isx!1.26!17.39!Isx;;chr8:118231678..118231692,-!p2@Maf!1.24!144.67!Maf;;chr11:53583544..53583559,+!p1@Irf1!1.21!249.01!Irf1;;chr19:6996243..6996293,-!p1@Esrra!1.21!165.84!Esrra;;chr5:148118809..148118832,-!p5@Cdx2!1.17!13.86!Cdx2;;chr9:31720903..31720918,-!p2@Barx2!1.17!13.86!Barx2;;chr14:76887526..76887555,+!p10@Tsc22d1!1.14!12.85!Tsc22d1;;chr1:173144100..173144138,+!p2@Nr1i3!1.13!12.35!Nr1i3;;chr2:163372869..163372882,+!p3@Hnf4a!1.11!11.85!Hnf4a;;chr17:28409136..28409150,+!p3@Ppard!1.11!11.85!Ppard;;chr3:90046995..90047031,-!p2@Creb3l4!1.09!14.11!Creb3l4;;chr5:148118614..148118625,-!p4@Cdx2!1.08!11.09!Cdx2;;chr11:98636531..98636559,-!p1@Nr1d1!1.06!60.99!Nr1d1;;chr10:20880629..20880683,-!p1@Myb!1.05!29.49!Myb;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.05!10.33!Ppard;;chr7:20213752..20213778,-!p2@Relb!1.05!10.33!Relb;;chr12:78063146..78063159,-!p2@Max!1.04!26.46!Max;;chr3:89197057..89197114,-!p1@Zbtb7b!1.03!33.52!Zbtb7b;;chr1:138857048..138857071,-!p2@Nr5a2!1.02!9.58!Nr5a2;;chr2:103143315..103143328,-!p2@Ehf!1.00!9.07!Ehf;;chr7:148452314..148452329,-!p1@Irf7!0.99!62.25!Irf7;;chr3:30039329..30039355,-!p5@Mecom!0.99!8.82!Mecom;;chr8:77397492..77397514,+!p3@Isx!0.99!8.82!Isx;;chr8:118231705..118231722,-!p3@Maf!0.98!70.06!Maf;;chr8:79426176..79426275,+!p1@Nr3c2!0.98!44.11!Nr3c2;;chr4:148178559..148178603,+!p1@Casz1!0.98!25.20!Casz1;;chr8:77397190..77397202,+!p5@Isx!0.97!8.32!Isx;;chr3:128918394..128918413,+!p5@Pitx2!0.96!8.06!Pitx2;;chr3:3508005..3508021,+!p3@Hnf4g!0.95!7.81!Hnf4g;;chr10:80555398..80555409,-!p2@Creb3l3!0.95!7.81!Creb3l3;;chr3:128918433..128918448,+!p8@Pitx2!0.92!7.31!Pitx2;;chr2:180069640..180069660,-!p4@Gata5!0.92!7.31!Gata5;;chr11:98636400..98636418,-!p4@Nr1d1!0.91!9.58!Nr1d1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!0.91!9.33!Zbtb11;;chr11:100948597..100948637,+!p1@Mlx!0.89!167.35!Mlx;;chr14:76887566..76887579,+!p18@Tsc22d1!0.89!6.80!Tsc22d1;;chr2:166888058..166888105,-!p2@Znfx1!0.88!22.18!Znfx1;;chr11:98636508..98636524,-!p3@Nr1d1!0.88!8.32!Nr1d1;;chr19:53384910..53384937,+!p3@Mxi1!0.86!18.65!Mxi1;;chr2:77357622..77357704,-!p1@Zfp385b!0.86!17.39!Zfp385b;;chr10:88996336..88996380,-!p2@Nr1h4!0.86!7.81!Nr1h4;;chr8:77397169..77397182,+!p7@Isx!0.86!6.30!Isx;;chr1:52176315..52176343,+!p1@Stat1!0.85!94.01!Stat1;;chr12:58646974..58647003,-!p1@Foxa1!0.85!8.32!Foxa1;;chr4:55545337..55545357,-!p1@Klf4!0.84!93.76!Klf4;;chr5:120121020..120121049,+!p1@Tbx3!0.83!37.80!Tbx3;;chr6:39068210..39068251,-!p1@Parp12!0.83!28.23!Parp12;;chr4:87452180..87452196,-!p3@Mllt3!0.83!11.85!Mllt3;;chr8:77396650..77396662,+!p4@Isx!0.83!5.80!Isx;;chr19:55816546..55816556,+!p3@Tcf7l2!0.82!22.68!Tcf7l2;;chr15:85566184..85566238,+!p1@Ppara!0.82!8.57!Ppara;;chr1:138846079..138846103,-!p6@Nr5a2!0.82!5.54!Nr5a2;;chr3:94176733..94176794,+!p1@Rorc!0.81!45.11!Rorc;;chr6:39068181..39068206,-!p3@Parp12!0.81!11.85!Parp12;;chr7:134519473..134519502,-!p3@Zfp747!0.81!7.56!Zfp747;;chr8:87502608..87502623,-!p1@Junb!0.80!94.51!Junb;;chr1:57029281..57029326,-!p1@Satb2!0.80!8.57!Satb2;;chr19:5560570..5560582,-!p2@Ovol1!0.80!5.29!Ovol1;;chr17:34784073..34784118,+!p2@Atf6b!0.79!22.43!Atf6b;;chr8:73905344..73905381,-!p2@Nr2f6!0.79!13.11!Nr2f6;;chr19:6996294..6996324,-!p2@Esrra!0.78!36.29!Esrra;;chr4:135700687..135700719,+!p2@Id3!0.78!8.06!Id3;;chr2:79296783..79296801,-!p1@Neurod1!0.78!5.04!Neurod1;;chr1:194979361..194979373,+!p2@Irf6!0.77!6.80!Irf6;;chr2:91035254..91035271,-!p3@Nr1h3!0.76!6.05!Nr1h3;;chr19:6164433..6164446,+!p2@Batf2!0.76!4.79!Batf2;;chr7:52960555..52960662,+!p1@Dbp!0.74!42.59!Dbp;;chr18:11052606..11052633,+!p4@Gata6!0.74!12.35!Gata6;;chr8:87643578..87643593,-!p1@Zfp791!0.74!10.08!Zfp791;;chr15:35225873..35225889,+!p2@Osr2!0.74!4.54!Osr2;;chr10:80555285..80555291,-!p4@Creb3l3!0.74!4.54!Creb3l3;;chr7:134519511..134519534,-!p2@Zfp747!0.73!8.57!Zfp747;;chr19:53384985..53385042,+!p1@Mxi1!0.72!147.19!Mxi1;;chr3:14578786..14578807,+!p2@E2f5!0.72!17.64!E2f5;;chr11:98636373..98636387,-!p5@Nr1d1!0.72!5.04!Nr1d1;;chr11:98822047..98822072,+!p9@Rara!0.72!4.28!Rara;;chr10:80555299..80555306,-!p3@Creb3l3!0.72!4.28!Creb3l3;;chr13:44825008..44825066,+!p5@Jarid2!0.71!8.82!Jarid2;;chr5:144951153..144951203,+!p1@Bhlha15!0.71!6.30!Bhlha15;;chr5:77524250..77524300,-!p1@Hopx!0.70!91.74!Hopx;;chr15:85566051..85566080,+!p4@Ppara!0.70!4.79!Ppara;;chr1:194979383..194979393,+!p3@Irf6!0.70!4.03!Irf6;;chr2:133377954..133377973,+!p1@Bmp2!0.69!13.86!Bmp2;;chr5:138187181..138187192,+!p5@Tsc22d4!0.69!11.09!Tsc22d4;;chr6:86619130..86619158,-!p2@Mxd1!0.68!62.25!Mxd1;;chr18:11052485..11052508,+!p2@Gata6!0.68!11.85!Gata6;;chr8:77397026..77397036,+!p6@Isx!0.68!3.78!Isx;;chr4:148178529..148178548,+!p3@Casz1!0.66!9.33!Casz1;;chr2:91035197..91035237,-!p1@Nr1h3!0.66!8.06!Nr1h3;;chr11:53164556..53164567,+!p5@Aff4!0.66!6.05!Aff4;;chr1:165219345..165219366,-!p7@Prrx1!0.66!3.53!Prrx1;;chr18:36441119..36441158,+!p2@Pura!0.65!9.33!Pura;;chr7:20408047..20408125,-!p1@Bcl3!0.64!44.86!Bcl3;;chr18:11052642..11052659,+!p1@Gata6!0.64!19.66!Gata6;;chr15:85566014..85566045,+!p3@Ppara!0.64!4.79!Ppara;;chr15:85565338..85565355,+!p7@Ppara!0.63!3.28!Ppara;;chr3:89197216..89197258,-!p3@Zbtb7b!0.62!7.31!Zbtb7b;;chr13:5860776..5860796,+!p1@Klf6!0.61!89.72!Klf6;;chr1:135320989..135321043,-!p1@Sox13!0.61!41.08!Sox13;;chr1:133904946..133904974,+!p7@Elk4!0.61!5.04!Elk4;;chr12:109242266..109242295,-!p1@Bcl11b!0.60!29.74!Bcl11b;;chr16:87699206..87699229,+!p3@Bach1!0.60!19.15!Bach1;;chr8:47825166..47825178,+!p2@Irf2!0.60!5.04!Irf2;;chr1:138857076..138857105,-!p1@Nr5a2!0.60!3.02!Nr5a2;;chr2:180069410..180069421,-!p3@Gata5!0.60!3.02!Gata5;;chr5:65194752..65194769,+!p1@Klf3!0.59!118.45!Klf3;;chr5:140267476..140267493,+!p1@Mafk!0.59!19.66!Mafk;;chr14:19071567..19071612,-!p2@Nr1d2!0.59!13.11!Nr1d2;;chr12:86814833..86814846,+!p1@Fos!0.58!81.41!Fos;;chr10:88996295..88996335,-!p3@Nr1h4!0.58!3.53!Nr1h4;;chr11:98407264..98407295,-!p1@Ikzf3!0.58!2.77!Ikzf3;;chr2:180069423..180069434,-!p2@Gata5!0.58!2.77!Gata5;;chr9:31721051..31721068,-!p3@Barx2!0.58!2.77!Barx2;;chr17:28409059..28409076,+!p6@Ppard!0.58!2.77!Ppard;;chr10:107769168..107769215,+!p1@Pawr!0.57!33.77!Pawr;;chr4:43575544..43575565,+!p2@Creb3!0.57!19.15!Creb3;;chr10:80600749..80600766,+!p2@Zbtb7a!0.57!17.39!Zbtb7a;;chr10:127095407..127095440,+!p3@Stat6!0.57!3.53!Stat6;;chr13:37918094..37918119,+!p6@Rreb1!0.56!6.55!Rreb1;;chr16:55822638..55822669,-!p3@Nfkbiz!0.56!4.28!Nfkbiz;;chr1:194979301..194979310,+!p4@Irf6!0.56!3.28!Irf6;;chr1:138846009..138846038,-!p3@Nr5a2!0.56!3.02!Nr5a2;;chr16:55822241..55822258,-!p1@Nfkbiz!0.55!100.56!Nfkbiz;;chr4:148275237..148275311,+!p2@Casz1!0.55!12.85!Casz1;;chr2:24278519..24278530,-!p3@Pax8!0.55!2.52!Pax8;;chr1:57029027..57029056,-!p7@Satb2!0.55!2.52!Satb2;;chr1:138846117..138846129,-!p8@Nr5a2!0.55!2.52!Nr5a2;;chr10:79884592..79884621,-!p5@Tcf3!0.55!2.52!Tcf3;;chr11:98614335..98614349,+!p8@Thra!0.55!2.52!Thra;;chr2:152561980..152561997,+!p1@Id1!0.54!91.74!Id1;;chr1:135320962..135320981,-!p2@Sox13!0.54!10.08!Sox13;;chr8:47825203..47825225,+!p3@Irf2!0.54!3.53!Irf2;;chr5:104182694..104182724,+!p8@Aff1!0.54!3.28!Aff1;;chr2:160192793..160192809,-!p1@Mafb!0.52!45.11!Mafb;;chr1:39250584..39250643,+!p1@Npas2!0.52!14.62!Npas2;;chr18:75527009..75527027,+!p1@Smad7!0.51!61.50!Smad7;;chr19:46379199..46379301,+!p1@Nfkb2!0.51!16.13!Nfkb2;;chr10:80598209..80598236,+!p4@Zbtb7a!0.51!4.28!Zbtb7a;;chr1:138846047..138846074,-!p5@Nr5a2!0.51!2.52!Nr5a2;;chr1:194982959..194983007,+!p5@Irf6!0.51!2.27!Irf6;;chr16:87699237..87699279,+!p1@Bach1!0.50!29.74!Bach1;;chr4:135728581..135728668,+!p1@E2f2!0.50!13.11!E2f2;;chr4:87452200..87452229,-!p2@Mllt3!0.50!5.54!Mllt3;;chr11:53583960..53584007,+!p2@Irf1!0.50!5.54!Irf1;;chr2:146047829..146047847,+!p1@Insm1!0.50!4.54!Insm1;;chr5:120121262..120121282,+!p6@Tbx3!0.50!2.52!Tbx3;;chr6:37391910..37391928,-!p3@Creb3l2!0.50!2.52!Creb3l2;;chr7:35904304..35904320,+!p1@Cebpa!0.49!57.21!Cebpa;;chr8:72519989..72520007,-!p5@Gatad2a!0.49!13.11!Gatad2a;;chr5:77524231..77524245,-!p3@Hopx!0.49!6.30!Hopx;;chr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f13!0.09!7.81!Klf13;;chr10:127707562..127707597,+!p2@Stat2!0.09!4.79!Stat2;;chr5:104121453..104121479,+!p4@Aff1!0.09!4.28!Aff1;;chr18:55147667..55147746,-!p2@Zfp608!0.09!4.28!Zfp608;;chr16:33380881..33380909,+!p1@Zfp148!0.09!4.03!Zfp148;;chr13:67461490..67461531,-!p1@Zfp595,p1@Zfp953!0.09!3.78!Zfp953;;chr15:38230415..38230426,-!p2@Klf10!0.09!3.02!Klf10;;chr7:13063643..13063662,+!p2@Zfp606!0.09!2.02!Zfp606;;chr8:92872242..92872285,-!p1@Tox3!0.09!2.02!Tox3;;chr15:57526316..57526332,+!p4@Zhx2!0.09!1.76!Zhx2;;chr7:13420092..13420160,+!p2@Zfp110!0.09!1.26!Zfp110;;chr7:135381498..135381509,-!p2@9130023H24Rik!0.09!1.01!9130023H24Rik;;chr9:63869834..63869849,-!p5@Smad6!0.09!1.01!Smad6;;chr2:120996813..120996829,-!p2@Zscan29!0.09!1.01!Zscan29;;chr8:108583683..108583693,+!p3@Nfatc3!0.09!0.76!Nfatc3;;chr5:110539135..110539159,+!p4@Zfp605!0.09!0.76!Zfp605;;chr12:109242296..109242307,-!p3@Bcl11b!0.09!0.76!Bcl11b;;chr10:44178474..44178487,-!p4@Prdm1!0.09!0.76!Prdm1;;chr11:102177921..102177960,-!p9@Ubtf!0.09!0.76!Ubtf;;chr3:9610233..9610247,-!p4@Zfp704!0.09!0.76!Zfp704;;chr4:87678639..87678653,-!p11@Mllt3!0.09!0.50!Mllt3;;chr3:133207214..133207228,-!p2@Tet2!0.09!0.50!Tet2;;chr1:38721792..38721845,-!p1@Aff3!0.09!0.50!Aff3;;chr7:25292033..25292043,+!p9@Zfp428!0.09!0.50!Zfp428;;chr10:107769219..107769226,+!p5@Pawr!0.09!0.50!Pawr;;chr13:44825963..44825967,+!p12@Jarid2!0.09!0.50!Jarid2;;chr7:133839456..133839523,+!p1@Bola2!0.08!53.18!Bola2;;chr5:21290933..21291050,-!p1@Dnajc2!0.08!40.32!Dnajc2;;chr12:4484016..4484074,-!p1@Ncoa1!0.08!17.14!Ncoa1;;chr17:24806629..24806672,+!p1@Zfp598!0.08!11.34!Zfp598;;chr17:35372700..35372762,-!p1@Nfkbil1!0.08!11.09!Nfkbil1;;chr5:145992626..145992652,+!p2@Zfp655!0.08!6.80!Zfp655;;chr3:95021612..95021650,-!p2@Gabpb2!0.08!4.79!Gabpb2;;chr5:92391901..92391936,+!p1@Thap6!0.08!4.54!Thap6;;chr8:125778131..125778178,+!p1@Zfp276!0.08!4.28!Zfp276;;chr16:33380851..33380873,+!p3@Zfp148!0.08!3.02!Zfp148;;chr18:84255804..84255832,-!p2@Tshz1!0.08!3.02!Tshz1;;chr17:34169293..34169320,+!p3@Rxrb!0.08!2.52!Rxrb;;chr1:181476392..181476407,-!p2@Tfb2m!0.08!2.02!Tfb2m;;chr10:41995430..41995458,-!p3@Foxo3!0.08!2.02!Foxo3;;chr2:48805633..48805648,+!p5@Mbd5!0.08!1.26!Mbd5;;chr6:72849280..72849297,-!p6@Kcmf1!0.08!1.26!Kcmf1;;chr10:22451765..22451795,-!p6@Tbpl1!0.08!0.76!Tbpl1;;chr12:77470573..77470585,-!p6@Zbtb25!0.08!0.76!Zbtb25;;chr12:3806513..3806527,+!p9@Dnmt3a!0.08!0.76!Dnmt3a;;chrX:137077699..137077705,-!p8@Tsc22d3!0.08!0.50!Tsc22d3;;chr1:181733959..181733977,-!p4@Ahctf1!0.08!0.50!Ahctf1;;chr5:65213459..65213485,+!p12@Klf3!0.08!0.50!Klf3;;chr5:53981578..53981590,+!p4@Rbpj!0.08!0.50!Rbpj;;chr2:168055853..168055886,-!p1@Adnp,p1@Dpm1!0.07!70.82!Adnp;;chr13:44826722..44826742,+!p1@Jarid2!0.07!16.63!Jarid2;;chr12:86940338..86940357,+!p1@Jdp2!0.07!9.83!Jdp2;;chr3:14578609..14578687,+!p1@E2f5!0.07!9.33!E2f5;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.07!5.54!Zbtb11;;chr12:100631123..100631206,-!p3@Foxn3!0.07!5.29!Foxn3;;chr7:6124098..6124133,+!p1@Zfp444!0.07!4.03!Zfp444;;chr4:82151622..82151643,-!p4@Nfib!0.07!3.53!Nfib;;chr11:97524415..97524455,+!p2@Mllt6!0.07!3.28!Mllt6;;chr9:20297135..20297154,-!p2@Zfp426!0.07!3.02!Zfp426;;chrX:45807489..45807502,-!p2@Elf4!0.07!2.52!Elf4;;chr10:41996471..41996487,-!p4@Foxo3!0.07!2.27!Foxo3;;chr19:53384965..53384984,+!p4@Mxi1!0.07!2.27!Mxi1;;chr1:52176406..52176433,+!p2@Stat1!0.07!1.76!Stat1;;chr18:76401789..76401814,+!p4@Smad2!0.07!1.51!Smad2;;chr16:4559721..4559747,-!p3@Tfap4!0.07!1.51!Tfap4;;chr3:152058408..152058453,+!p5@Gm8261,p5@Zzz3!0.07!1.51!Zzz3;;chr4:126700650..126700678,+!p5@Sfpq!0.07!1.26!Sfpq;;chr6:47545052..47545064,-!p2@Ezh2!0.07!1.26!Ezh2;;chr4:134708451..134708469,+!p1@Runx3!0.07!1.01!Runx3;;chr15:75771423..75771445,+!p2@Zfp623!0.07!0.76!Zfp623;;chr13:72766250..72766273,+!p1@Irx2!0.07!0.76!Irx2;;chr19:10315252..10315266,-!p2@Gm98!0.07!0.76!Gm98;;chr10:127176667..127176679,+!p2@Zbtb39!0.07!0.76!Zbtb39;;chr11:96153767..96153822,+!p1@Hoxb6!0.07!0.76!Hoxb6;;chr11:96691273..96691286,-!p6@Nfe2l1!0.07!0.50!Nfe2l1;;chr3:96002383..96002407,-!p4@Bola1!0.07!0.50!Bola1;;chr15:79178060..79178074,+!p2@Maff!0.07!0.50!Maff;;chr6:133985790..133985801,+!p8@Etv6!0.07!0.50!Etv6;;chr6:48395677..48395688,-!p7@Zfp467!0.07!0.50!Zfp467;;chr12:85534937..85534948,-!p10@C130039O16Rik!0.07!0.50!C130039O16Rik;;chr14:47896863..47896886,-!p5@Wdhd1!0.07!0.25!Wdhd1;;chr12:109241728..109241781,-!p2@Bcl11b!0.07!0.25!Bcl11b;;chr2:27532912..27532923,+!p9@Rxra!0.07!0.25!Rxra;;chrX:148667771..148667803,+!p1@Kdm5c!0.06!56.96!Kdm5c;;chr6:83299445..83299490,+!p1@Bola3!0.06!43.10!Bola3;;chr2:165818125..165818167,+!p1@Ncoa3!0.06!26.97!Ncoa3;;chr2:84877326..84877362,+!p2@Ssrp1!0.06!21.67!Ssrp1;;chr6:47544966..47545046,-!p1@Ezh2!0.06!20.92!Ezh2;;chr4:97444446..97444470,+!p3@Nfia!0.06!9.07!Nfia;;chr7:105851601..105851647,+!p2@Prkrir!0.06!8.82!Prkrir;;chr3:95021853..95021911,-!p1@Gabpb2!0.06!7.31!Gabpb2;;chr8:118230866..118230891,-!p4@Maf!0.06!6.05!Maf;;chr11:70577930..70577985,+!p1@Zfp3!0.06!5.29!Zfp3;;chr17:28314341..28314394,+!p2@Zfp523!0.06!5.29!Zfp523;;chr17:45570455..45570479,-!p2@Cdc5l!0.06!3.02!Cdc5l;;chr2:38781916..38781974,-!p1@Nr6a1!0.06!2.27!Nr6a1;;chr4:149611311..149611317,+!p2@Eno1!0.06!2.27!Eno1;;chr6:124959131..124959160,+!p4@Zfp384!0.06!2.02!Zfp384;;chrX:35542909..35542927,+!p4@Zbtb33!0.06!1.76!Zbtb33;;chr8:72520121..72520135,-!p12@Gatad2a!0.06!1.26!Gatad2a;;chr8:107694568..107694586,+!p5@Cbfb!0.06!1.26!Cbfb;;chr3:30993616..30993634,+!p3@Skil!0.06!1.01!Skil;;chr3:32264530..32264544,-!p2@Zmat3!0.06!0.76!Zmat3;;chrX:137077682..137077692,-!p5@Tsc22d3!0.06!0.76!Tsc22d3;;chr9:110034493..110034502,+!p2@Smarcc1!0.06!0.76!Smarcc1;;chr5:147760370..147760377,+!p6@Gtf3a!0.06!0.76!Gtf3a;;chr11:98636685..98636696,-!p7@Nr1d1!0.06!0.76!Nr1d1;;chr13:59924409..59924418,-!p6@Zcchc6!0.06!0.50!Zcchc6;;chr19:23216166..23216191,+!p6@Klf9!0.06!0.50!Klf9;;chr17:84105231..84105253,+!p7@Mta3!0.06!0.25!Mta3;;chr10:79390120..79390129,+!p4@Arid3a!0.06!0.25!Arid3a;;chr7:24867205..24867217,+!p2@Zfp180!0.06!0.25!Zfp180;;chr5:104182754..104182777,+!p11@Aff1!0.06!0.25!Aff1;;chr14:22806778..22806795,-!p5@Zfp503!0.06!0.25!Zfp503;;chr6:115310968..115310980,+!p8@Pparg!0.06!0.25!Pparg;;chr8:23970000..23970026,+!p1@Myst3!0.05!52.17!Myst3;;chr12:41172341..41172385,-!p1@Zfp277!0.05!34.28!Zfp277;;chr6:92041430..92041460,+!p1@Nr2c2!0.05!22.43!Nr2c2;;chr1:13364108..13364150,-!p1@Ncoa2!0.05!21.67!Ncoa2;;chr5:123844791..123844835,+!p1@Mlxip!0.05!16.89!Mlxip;;chr15:102034070..102034124,+!p1@Zfp740!0.05!16.38!Zfp740;;chr5:31504603..31504702,-!p1@Zfp513!0.05!9.58!Zfp513;;chr4:133801494..133801519,-!p2@Zfp593!0.05!6.30!Zfp593;;chr7:28764174..28764200,-!p1@Zfp780b!0.05!6.05!Zfp780b;;chr8:109620276..109620306,-!p2@Terf2!0.05!5.04!Terf2;;chr19:55816414..55816425,+!p4@Tcf7l2!0.05!4.54!Tcf7l2;;chr2:164737060..164737083,-!p1@Zfp335!0.05!4.03!Zfp335;;chr13:37918773..37918818,+!p3@Rreb1!0.05!3.53!Rreb1;;chr13:67370029..67370067,-!p1@Zfp458!0.05!3.53!Zfp458;;chr17:87153462..87153473,+!p3@Epas1!0.05!3.02!Epas1;;chr10:126725875..126725902,-!p3@Mbd6!0.05!2.77!Mbd6;;chr7:31742079..31742108,-!p4@LOC100504922,p4@Usf2!0.05!2.27!Usf2;;chr10:20880731..20880775,-!p2@Myb!0.05!1.26!Myb;;chr2:165818178..165818187,+!p3@Ncoa3!0.05!1.26!Ncoa3;;chr1:95651267..95651284,-!p4@Thap4!0.05!1.01!Thap4;;chr1:189821714..189821761,+!p1@Esrrg!0.05!1.01!Esrrg;;chr1:74634786..74634804,-!p5@Zfp142!0.05!0.50!Zfp142;;chr8:87324203..87324206,-!p10@Nfix!0.05!0.50!Nfix;;chr13:64254437..64254453,-!p4@Zfp367!0.05!0.50!Zfp367;;chr14:18493480..18493494,+!p2@Thrb!0.05!0.25!Thrb;;chr2:126501847..126501876,-!p5@Gabpb1!0.05!0.25!Gabpb1;;chr10:13686074..13686090,+!p9@Hivep2!0.05!0.25!Hivep2;;chr8:72662954..72662961,-!p5@LOC100048268,p5@Rfxank!0.05!0.25!Rfxank;;chr9:71743910..71743915,-!p7@Tcf12!0.05!0.25!Tcf12;;chr5:77695241..77695257,+!p10@Rest!0.05!0.25!Rest;;chr5:38611816..38611827,+!p4@Lyar!0.05!0.25!Lyar;;chr4:135728282..135728310,+!p4@E2f2!0.05!0.25!E2f2;;chr10:79896360..79896400,-!p1@Tcf3!0.04!40.07!Tcf3;;chr18:76401546..76401613,+!p1@Smad2!0.04!20.41!Smad2;;chr8:124806017..124806040,+!p2@Zfpm1!0.04!10.08!Zfpm1;;chr12:112088483..112088512,+!p1@Zfp839!0.04!5.04!Zfp839;;chr5:65194720..65194738,+!p2@Klf3!0.04!4.54!Klf3;;chr7:26053413..26053439,+!p4@Cic!0.04!3.28!Cic;;chr16:33380950..33380988,+!p2@Zfp148!0.04!3.28!Zfp148;;chr13:37917925..37917950,+!p4@Rreb1!0.04!3.02!Rreb1;;chr12:3806536..3806571,+!p3@Dnmt3a!0.04!2.77!Dnmt3a;;chr7:4866778..4866801,+!p3@Zfp628!0.04!2.77!Zfp628;;chr18:84255649..84255661,-!p4@Tshz1!0.04!1.76!Tshz1;;chr1:64579465..64579474,+!p5@Creb1!0.04!1.51!Creb1;;chr1:95651346..95651383,-!p3@Thap4!0.04!1.51!Thap4;;chrX:131543765..131543775,-!p2@Zmat1!0.04!1.26!Zmat1;;chr13:44826634..44826645,+!p7@Jarid2!0.04!1.01!Jarid2;;chr15:25914138..25914146,+!p4@Zfp622!0.04!0.76!Zfp622;;chr2:153067138..153067147,-!p3@Plagl2!0.04!0.76!Plagl2;;chr1:52065454..52065495,+!p1@Stat4!0.04!0.76!Stat4;;chr18:36953486..36953503,+!p2@Zmat2!0.04!0.76!Zmat2;; | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:10253-104C1 | |||
|is_a=EFO:0002091;;FF:0000002;;FF:0011274 | |||
|is_obsolete= | |||
|library_id=CNhs13232 | |||
|library_id_phase_based=2:CNhs13232 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;10253 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;10253 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/Ileum%2520epithelium%252c%2520pool2.CNhs13232.10253-104C1.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/Ileum%2520epithelium%252c%2520pool2.CNhs13232.10253-104C1.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Ileum%2520epithelium%252c%2520pool2.CNhs13232.10253-104C1.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Ileum%2520epithelium%252c%2520pool2.CNhs13232.10253-104C1.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Ileum%2520epithelium%252c%2520pool2.CNhs13232.10253-104C1.mm9.nobarcode.rdna.fa.gz | |||
|name=Ileum epithelium, pool2 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs13232,LSID1006,release012,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=0.0822298478454525,0,0,0,0,0,-0.497453041177005,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0886326182118205,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.38115755590039,0,0,0,0,-0.00970287220376229,-0.120690107284006,-0.0869183944166835,0.0940963699509363,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0976147801771522,0,-0.122238570723291,0,0,-0.0200716156083788,-0.117389802908326,-0.310650657339386,-0.158091042771083,-0.0520550650554724,0,-0.0780086007519514,-0.098159946211252,-0.2481904685864,0,0,-0.0830631906659118,-0.066171801118691,-0.418649644316929,-0.0788315948399074,0,0,0,0,0,0.0976147801771522,-0.206814654737266,-1.13384382175846,-0.269803002231399,0,0,0,0,0 | |||
|rna_box=104 | |||
|rna_catalog_number= | |||
|rna_concentration=0.0475 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number=Cont_ileum_b | |||
|rna_od260/230=2.23 | |||
|rna_od260/280=2.29 | |||
|rna_position=C1 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=104C1 | |||
|rna_weight_ug=0.5225 | |||
|sample_age= | |||
|sample_category=tissues | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=Shinji Fukuda (RCAI) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition=epithelial sheet was isolated by manipulation with a fine needle under stereomicroscopic monitoring | |||
|sample_id=10253 | |||
|sample_note= | |||
|sample_sex=female | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=Balb/c | |||
|sample_tissue=ileum | |||
|top_motifs=ZEB1:2.60647408505;HNF4A_NR2F1,2:2.57173617801;PPARG:2.34256391469;SNAI1..3:2.09188945074;NFIX:1.89487828696;PDX1:1.78535762669;TBX4,5:1.77188044656;HNF1A:1.6500819825;YY1:1.61355464426;ESRRA:1.61182650387;IRF1,2:1.59158104629;FOXM1:1.56759456843;ADNP_IRX_SIX_ZHX:1.51358990228;ARID5B:1.48528620508;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.42816537171;NKX6-1,2:1.41746138069;NR6A1:1.41713204415;FOXN1:1.33870903643;FOSL2:1.25801648584;ELK1,4_GABP{A,B1}:1.24890504332;NR5A1,2:1.19505460046;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16775261625;NR1H4:1.09421009661;bHLH_family:1.05509964886;AR:0.970622985093;DMAP1_NCOR{1,2}_SMARC:0.944086822475;T:0.942309833909;STAT5{A,B}:0.905792378605;STAT2,4,6:0.712511408953;ATF6:0.68190941652;POU2F1..3:0.631093335334;MYOD1:0.630342945192;LMO2:0.598836500881;FOS_FOS{B,L1}_JUN{B,D}:0.596428316006;ETS1,2:0.562183863652;STAT1,3:0.479245760832;NFKB1_REL_RELA:0.417866295741;FOXQ1:0.406436764964;ELF1,2,4:0.369024905532;TFCP2:0.312616578247;VSX1,2:0.308311834383;FOX{I1,J2}:0.277322811223;BACH2:0.274692432402;HLF:0.26264903303;HES1:0.251345218849;NFY{A,B,C}:0.234989814141;IRF7:0.229057653515;GTF2A1,2:0.204745315387;TP53:0.200608485173;FOXL1:0.190260737768;PAX8:0.189300136319;ZNF148:0.167238971466;SPI1:0.133843032766;RUNX1..3:0.127134623438;MYB:0.125156784472;FOXA2:0.0790581788534;FOX{D1,D2}:0.0666388301679;E2F1..5:0.0591632788582;OCT4_SOX2{dimer}:0.0542171276022;TLX1..3_NFIC{dimer}:0.0526230656781;GATA6:0.0347051268241;LEF1_TCF7_TCF7L1,2:0.0254246359987;XCPE1{core}:0.0141150052164;HOX{A5,B5}:0.00938553322379;CDX1,2,4:0.00670214476467;ZBTB6:0.00375154712496;SP1:-0.0121342826993;ONECUT1,2:-0.0224406801048;ATF5_CREB3:-0.0228658591291;HBP1_HMGB_SSRP1_UBTF:-0.0739446687941;EBF1:-0.0769501523581;PAX2:-0.0789177229159;NFE2:-0.106886489416;NANOG{mouse}:-0.129589791049;FOXO1,3,4:-0.135365743528;CREB1:-0.14460588224;TBP:-0.15807790744;ESR1:-0.210668522769;NKX3-2:-0.222454095319;SREBF1,2:-0.229368193172;LHX3,4:-0.260736878803;ALX4:-0.29301007732;POU3F1..4:-0.313775420703;NANOG:-0.316936396041;PBX1:-0.332298019743;JUN:-0.344714574436;ZNF423:-0.363987695195;ZNF143:-0.364246581919;GFI1:-0.387418744777;CRX:-0.389497844426;AIRE:-0.393653871458;PAX6:-0.414830268922;CDC5L:-0.419358020282;SPZ1:-0.435969191587;CUX2:-0.439506028896;NFE2L2:-0.450209646947;POU1F1:-0.450657285227;ATF4:-0.477146768901;POU6F1:-0.480644229718;BPTF:-0.531087373342;RORA:-0.542201791662;HIF1A:-0.551028479701;HMGA1,2:-0.567910307538;NFE2L1:-0.578077757116;FOXP3:-0.593754444703;GZF1:-0.594564662426;SPIB:-0.615394403267;POU5F1:-0.621193716144;FOX{F1,F2,J1}:-0.637714647294;REST:-0.650595668508;MYBL2:-0.655053943751;SOX17:-0.661467918743;NRF1:-0.663668700574;MAFB:-0.670524075491;RXRA_VDR{dimer}:-0.683945057009;TLX2:-0.697436397933;ZBTB16:-0.701423375816;EP300:-0.707566949928;GFI1B:-0.716144712571;MEF2{A,B,C,D}:-0.736363536339;MTF1:-0.753231709375;RFX1:-0.754267644657;NKX2-2,8:-0.766350578617;MED-1{core}:-0.775277656726;CEBPA,B_DDIT3:-0.781559989636;SOX{8,9,10}:-0.792205594233;SRF:-0.80484423054;TFAP2B:-0.805822220558;ZFP161:-0.80810806281;TFAP4:-0.810652260237;HMX1:-0.832963500319;BREu{core}:-0.836163779442;PRRX1,2:-0.84876531625;RXR{A,B,G}:-0.855402200224;AHR_ARNT_ARNT2:-0.860467204572;MYFfamily:-0.865216084387;GCM1,2:-0.915501777616;PAX1,9:-0.916762981118;TEAD1:-0.918687865889;NKX2-1,4:-0.94305295329;EVI1:-0.947730323407;NR3C1:-0.95681178999;HOX{A4,D4}:-0.978795211631;RBPJ:-0.989295217463;PAX5:-0.992767093105;NKX2-3_NKX2-5:-1.01854512388;MAZ:-1.06438109894;HIC1:-1.07710732146;EGR1..3:-1.09879143765;RFX2..5_RFXANK_RFXAP:-1.1025069025;HSF1,2:-1.12257834101;TGIF1:-1.12600255681;UFEwm:-1.14100354921;NFIL3:-1.16991088529;TFAP2{A,C}:-1.18980180353;SMAD1..7,9:-1.25023268706;GTF2I:-1.26160240669;ZNF238:-1.28118070453;DBP:-1.30582326624;SOX2:-1.31354115948;MTE{core}:-1.33291684641;FOXD3:-1.38316727812;TFDP1:-1.38379835572;ALX1:-1.39511854933;TAL1_TCF{3,4,12}:-1.42616592934;KLF4:-1.45913696842;HOXA9_MEIS1:-1.46907076244;ZNF384:-1.47894857298;MZF1:-1.51742054878;NKX3-1:-1.55601177868;PITX1..3:-1.61194863495;NHLH1,2:-1.61984783788;EN1,2:-1.62190772006;PATZ1:-1.64093427125;FOXP1:-1.66932082738;ATF2:-1.68591959604;PAX4:-1.69039919126;PRDM1:-1.69940609335;TEF:-1.72198349986;HAND1,2:-1.74771100449;GLI1..3:-1.8086106563;RREB1:-1.82053712736;TOPORS:-1.82273932728;IKZF1:-1.89616928586;SOX5:-1.97165262793;NFATC1..3:-1.97923667967;ZIC1..3:-2.09613227568;GATA4:-2.3047682307;IKZF2:-2.64661186354 | |top_motifs=ZEB1:2.60647408505;HNF4A_NR2F1,2:2.57173617801;PPARG:2.34256391469;SNAI1..3:2.09188945074;NFIX:1.89487828696;PDX1:1.78535762669;TBX4,5:1.77188044656;HNF1A:1.6500819825;YY1:1.61355464426;ESRRA:1.61182650387;IRF1,2:1.59158104629;FOXM1:1.56759456843;ADNP_IRX_SIX_ZHX:1.51358990228;ARID5B:1.48528620508;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.42816537171;NKX6-1,2:1.41746138069;NR6A1:1.41713204415;FOXN1:1.33870903643;FOSL2:1.25801648584;ELK1,4_GABP{A,B1}:1.24890504332;NR5A1,2:1.19505460046;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16775261625;NR1H4:1.09421009661;bHLH_family:1.05509964886;AR:0.970622985093;DMAP1_NCOR{1,2}_SMARC:0.944086822475;T:0.942309833909;STAT5{A,B}:0.905792378605;STAT2,4,6:0.712511408953;ATF6:0.68190941652;POU2F1..3:0.631093335334;MYOD1:0.630342945192;LMO2:0.598836500881;FOS_FOS{B,L1}_JUN{B,D}:0.596428316006;ETS1,2:0.562183863652;STAT1,3:0.479245760832;NFKB1_REL_RELA:0.417866295741;FOXQ1:0.406436764964;ELF1,2,4:0.369024905532;TFCP2:0.312616578247;VSX1,2:0.308311834383;FOX{I1,J2}:0.277322811223;BACH2:0.274692432402;HLF:0.26264903303;HES1:0.251345218849;NFY{A,B,C}:0.234989814141;IRF7:0.229057653515;GTF2A1,2:0.204745315387;TP53:0.200608485173;FOXL1:0.190260737768;PAX8:0.189300136319;ZNF148:0.167238971466;SPI1:0.133843032766;RUNX1..3:0.127134623438;MYB:0.125156784472;FOXA2:0.0790581788534;FOX{D1,D2}:0.0666388301679;E2F1..5:0.0591632788582;OCT4_SOX2{dimer}:0.0542171276022;TLX1..3_NFIC{dimer}:0.0526230656781;GATA6:0.0347051268241;LEF1_TCF7_TCF7L1,2:0.0254246359987;XCPE1{core}:0.0141150052164;HOX{A5,B5}:0.00938553322379;CDX1,2,4:0.00670214476467;ZBTB6:0.00375154712496;SP1:-0.0121342826993;ONECUT1,2:-0.0224406801048;ATF5_CREB3:-0.0228658591291;HBP1_HMGB_SSRP1_UBTF:-0.0739446687941;EBF1:-0.0769501523581;PAX2:-0.0789177229159;NFE2:-0.106886489416;NANOG{mouse}:-0.129589791049;FOXO1,3,4:-0.135365743528;CREB1:-0.14460588224;TBP:-0.15807790744;ESR1:-0.210668522769;NKX3-2:-0.222454095319;SREBF1,2:-0.229368193172;LHX3,4:-0.260736878803;ALX4:-0.29301007732;POU3F1..4:-0.313775420703;NANOG:-0.316936396041;PBX1:-0.332298019743;JUN:-0.344714574436;ZNF423:-0.363987695195;ZNF143:-0.364246581919;GFI1:-0.387418744777;CRX:-0.389497844426;AIRE:-0.393653871458;PAX6:-0.414830268922;CDC5L:-0.419358020282;SPZ1:-0.435969191587;CUX2:-0.439506028896;NFE2L2:-0.450209646947;POU1F1:-0.450657285227;ATF4:-0.477146768901;POU6F1:-0.480644229718;BPTF:-0.531087373342;RORA:-0.542201791662;HIF1A:-0.551028479701;HMGA1,2:-0.567910307538;NFE2L1:-0.578077757116;FOXP3:-0.593754444703;GZF1:-0.594564662426;SPIB:-0.615394403267;POU5F1:-0.621193716144;FOX{F1,F2,J1}:-0.637714647294;REST:-0.650595668508;MYBL2:-0.655053943751;SOX17:-0.661467918743;NRF1:-0.663668700574;MAFB:-0.670524075491;RXRA_VDR{dimer}:-0.683945057009;TLX2:-0.697436397933;ZBTB16:-0.701423375816;EP300:-0.707566949928;GFI1B:-0.716144712571;MEF2{A,B,C,D}:-0.736363536339;MTF1:-0.753231709375;RFX1:-0.754267644657;NKX2-2,8:-0.766350578617;MED-1{core}:-0.775277656726;CEBPA,B_DDIT3:-0.781559989636;SOX{8,9,10}:-0.792205594233;SRF:-0.80484423054;TFAP2B:-0.805822220558;ZFP161:-0.80810806281;TFAP4:-0.810652260237;HMX1:-0.832963500319;BREu{core}:-0.836163779442;PRRX1,2:-0.84876531625;RXR{A,B,G}:-0.855402200224;AHR_ARNT_ARNT2:-0.860467204572;MYFfamily:-0.865216084387;GCM1,2:-0.915501777616;PAX1,9:-0.916762981118;TEAD1:-0.918687865889;NKX2-1,4:-0.94305295329;EVI1:-0.947730323407;NR3C1:-0.95681178999;HOX{A4,D4}:-0.978795211631;RBPJ:-0.989295217463;PAX5:-0.992767093105;NKX2-3_NKX2-5:-1.01854512388;MAZ:-1.06438109894;HIC1:-1.07710732146;EGR1..3:-1.09879143765;RFX2..5_RFXANK_RFXAP:-1.1025069025;HSF1,2:-1.12257834101;TGIF1:-1.12600255681;UFEwm:-1.14100354921;NFIL3:-1.16991088529;TFAP2{A,C}:-1.18980180353;SMAD1..7,9:-1.25023268706;GTF2I:-1.26160240669;ZNF238:-1.28118070453;DBP:-1.30582326624;SOX2:-1.31354115948;MTE{core}:-1.33291684641;FOXD3:-1.38316727812;TFDP1:-1.38379835572;ALX1:-1.39511854933;TAL1_TCF{3,4,12}:-1.42616592934;KLF4:-1.45913696842;HOXA9_MEIS1:-1.46907076244;ZNF384:-1.47894857298;MZF1:-1.51742054878;NKX3-1:-1.55601177868;PITX1..3:-1.61194863495;NHLH1,2:-1.61984783788;EN1,2:-1.62190772006;PATZ1:-1.64093427125;FOXP1:-1.66932082738;ATF2:-1.68591959604;PAX4:-1.69039919126;PRDM1:-1.69940609335;TEF:-1.72198349986;HAND1,2:-1.74771100449;GLI1..3:-1.8086106563;RREB1:-1.82053712736;TOPORS:-1.82273932728;IKZF1:-1.89616928586;SOX5:-1.97165262793;NFATC1..3:-1.97923667967;ZIC1..3:-2.09613227568;GATA4:-2.3047682307;IKZF2:-2.64661186354 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10253-104C1;search_select_hide=table117:10253-104C1 | |||
}} | }} |
Latest revision as of 13:57, 3 June 2020
Name: | Ileum epithelium, pool2 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs13232 |
Sample type: | tissues |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13232
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | -0.0355 |
1001 | -0.0749 |
1002 | -0.116 |
1003 | -0.175 |
1004 | 0 |
1005 | 0.177 |
1006 | -0.351 |
1007 | -0.117 |
1008 | 1.964 |
1009 | -0.19 |
101 | -0.172 |
1010 | 0 |
1011 | -0.298 |
1012 | 0 |
1013 | 0.266 |
1014 | -0.0874 |
1015 | -0.424 |
1016 | -0.594 |
1017 | 0 |
1018 | 0.245 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.0264 |
1023 | 0 |
1024 | -0.307 |
1025 | 0 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.176 |
103 | -0.0887 |
1030 | 0 |
1031 | -0.911 |
1032 | 0.751 |
1033 | -0.00394 |
1034 | 0.156 |
1035 | 0 |
1036 | -0.111 |
1037 | 0 |
1038 | 0.0793 |
1039 | 0.198 |
104 | 0 |
1040 | -0.546 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13232
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13232
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.126 |
10 | 10 | 0.105 |
100 | 100 | 0.733 |
101 | 101 | 0.76 |
102 | 102 | 0.568 |
103 | 103 | 0.227 |
104 | 104 | 0.894 |
105 | 105 | 0.216 |
106 | 106 | 0.0465 |
107 | 107 | 0.246 |
108 | 108 | 0.943 |
109 | 109 | 0.0357 |
11 | 11 | 0.109 |
110 | 110 | 0.224 |
111 | 111 | 0.294 |
112 | 112 | 0.0218 |
113 | 113 | 0.456 |
114 | 114 | 0.0593 |
115 | 115 | 0.832 |
116 | 116 | 0.223 |
117 | 117 | 0.0247 |
118 | 118 | 0.381 |
119 | 119 | 0.259 |
12 | 12 | 0.674 |
120 | 120 | 0.531 |
121 | 121 | 0.584 |
122 | 122 | 0.824 |
123 | 123 | 0.0431 |
124 | 124 | 0.1 |
125 | 125 | 0.169 |
126 | 126 | 0.0412 |
127 | 127 | 0.212 |
128 | 128 | 0.355 |
129 | 129 | 0.254 |
13 | 13 | 9.35114e-5 |
130 | 130 | 0.642 |
131 | 131 | 0.627 |
132 | 132 | 0.524 |
133 | 133 | 0.81 |
134 | 134 | 0.999 |
135 | 135 | 0.154 |
136 | 136 | 0.0219 |
137 | 137 | 0.756 |
138 | 138 | 0.0852 |
139 | 139 | 0.0866 |
14 | 14 | 0.727 |
140 | 140 | 0.208 |
141 | 141 | 0.222 |
142 | 142 | 1 |
143 | 143 | 0.236 |
144 | 144 | 0.318 |
145 | 145 | 0.0907 |
146 | 146 | 0.292 |
147 | 147 | 0.96 |
148 | 148 | 0.624 |
149 | 149 | 0.989 |
15 | 15 | 0.0901 |
150 | 150 | 0.372 |
151 | 151 | 0.637 |
152 | 152 | 0.0737 |
153 | 153 | 0.848 |
154 | 154 | 0.833 |
155 | 155 | 0.291 |
156 | 156 | 0.0586 |
157 | 157 | 0.461 |
158 | 158 | 0.624 |
159 | 159 | 0.655 |
160 | 160 | 0.716 |
161 | 161 | 0.657 |
162 | 162 | 0.911 |
163 | 163 | 0.299 |
164 | 164 | 0.0792 |
165 | 165 | 0.295 |
166 | 166 | 0.748 |
167 | 167 | 0.618 |
168 | 168 | 0.883 |
169 | 169 | 0.0428 |
17 | 17 | 0.0413 |
18 | 18 | 0.909 |
19 | 19 | 0.247 |
2 | 2 | 0.725 |
20 | 20 | 0.437 |
21 | 21 | 0.878 |
22 | 22 | 0.33 |
23 | 23 | 0.957 |
24 | 24 | 0.546 |
25 | 25 | 0.344 |
26 | 26 | 0.00915 |
27 | 27 | 0.736 |
28 | 28 | 0.334 |
29 | 29 | 0.0839 |
3 | 3 | 0.174 |
30 | 30 | 0.454 |
31 | 31 | 0.958 |
32 | 32 | 0.2 |
33 | 33 | 0.164 |
34 | 34 | 0.933 |
35 | 35 | 0.635 |
36 | 36 | 0.406 |
37 | 37 | 0.0389 |
38 | 38 | 0.52 |
39 | 39 | 0.289 |
4 | 4 | 0.476 |
40 | 40 | 0.137 |
41 | 41 | 0.249 |
42 | 42 | 0.645 |
43 | 43 | 0.359 |
44 | 44 | 0.138 |
45 | 45 | 0.488 |
46 | 46 | 0.272 |
47 | 47 | 0.335 |
48 | 48 | 0.184 |
49 | 49 | 0.278 |
5 | 5 | 0.444 |
50 | 50 | 0.62 |
51 | 51 | 0.744 |
52 | 52 | 0.184 |
53 | 53 | 0.445 |
54 | 54 | 0.598 |
55 | 55 | 0.619 |
56 | 56 | 0.606 |
57 | 57 | 0.958 |
58 | 58 | 0.279 |
59 | 59 | 0.265 |
6 | 6 | 0.544 |
60 | 60 | 0.0474 |
61 | 61 | 0.22 |
62 | 62 | 0.229 |
63 | 63 | 0.189 |
64 | 64 | 0.557 |
65 | 65 | 0.326 |
66 | 66 | 0.829 |
67 | 67 | 0.291 |
68 | 68 | 0.195 |
69 | 69 | 0.851 |
7 | 7 | 0.0525 |
70 | 70 | 0.0173 |
71 | 71 | 0.0995 |
72 | 72 | 0.245 |
73 | 73 | 0.0371 |
74 | 74 | 0.682 |
75 | 75 | 0.0296 |
76 | 76 | 0.648 |
77 | 77 | 0.192 |
78 | 78 | 0.0144 |
79 | 79 | 0.69 |
8 | 8 | 0.148 |
80 | 80 | 0.603 |
81 | 81 | 0.884 |
82 | 82 | 0.132 |
83 | 83 | 0.0467 |
84 | 84 | 0.125 |
85 | 85 | 0.131 |
86 | 86 | 0.0649 |
87 | 87 | 0.00766 |
88 | 88 | 0.28 |
89 | 89 | 0.181 |
9 | 9 | 0.914 |
90 | 90 | 0.111 |
91 | 91 | 0.613 |
92 | 92 | 0.469 |
93 | 93 | 0.516 |
94 | 94 | 0.451 |
95 | 95 | 0.00528 |
96 | 96 | 0.877 |
97 | 97 | 0.932 |
98 | 98 | 0.517 |
99 | 99 | 0.264 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13232
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0011274 mouse Ileum epithelium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002108 (small intestine)
0000160 (intestine)
0000331 (ileal mucosa)
0000483 (epithelium)
0002116 (ileum)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0001204 (mucosa of small intestine)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001168 (wall of small intestine)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011274 (mouse Ileum epithelium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)