FF:11816-124E7: Difference between revisions

Latest revision as of 18:22, 4 June 2020

Name:	CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J)
Species:	Mouse (Mus musculus)
Library ID:	CNhs13219
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell
cell line	NA
company	NA
collaboration	Morikawa (University of Kyoto)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B6TsPI-2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005993

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13219		CAGE		DRX008791		DRR009663

Accession ID Mm9

Library id		BAM		CTSS
CNhs13219		DRZ001088		DRZ002473

Accession ID Mm10

Library id		BAM		CTSS
CNhs13219		DRZ012438		DRZ013823

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13219

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0631
1002	-0.116
1003	-0.15
1004	0
1005	-0.0747
1006	-0.436
1007	-0.223
1008	0
1009	-0.19
101	0.676
1010	0
1011	0.153
1012	0.00667
1013	-0.323
1014	-0.0279
1015	0.167
1016	-0.594
1017	0
1018	0.0572
1019	0
102	0.906
1020	0.108
1021	0.266
1022	-0.281
1023	0.153
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.111
103	-0.0887
1030	0
1031	-1.09
1032	-0.655
1033	0.949
1034	0
1035	0
1036	0.618
1037	0
1038	-0.162
1039	-0.441
104	0
1040	-0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13219

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0167
MA0003.1	MA0003.1	0.103
MA0004.1	MA0004.1	0.018
MA0006.1	MA0006.1	0.154
MA0007.1	MA0007.1	0.568
MA0009.1	MA0009.1	0.555
MA0014.1	MA0014.1	0.867
MA0017.1	MA0017.1	0.19
MA0018.2	MA0018.2	2.45043e-9
MA0019.1	MA0019.1	0.825
MA0024.1	MA0024.1	0.943
MA0025.1	MA0025.1	0.297
MA0027.1	MA0027.1	0.487
MA0028.1	MA0028.1	0.00133
MA0029.1	MA0029.1	0.765
MA0030.1	MA0030.1	0.961
MA0031.1	MA0031.1	0.28
MA0035.2	MA0035.2	0.601
MA0038.1	MA0038.1	0.0152
MA0039.2	MA0039.2	0.106
MA0040.1	MA0040.1	0.862
MA0041.1	MA0041.1	0.0164
MA0042.1	MA0042.1	0.176
MA0043.1	MA0043.1	7.94709e-4
MA0046.1	MA0046.1	1.01137e-11
MA0047.2	MA0047.2	0.771
MA0048.1	MA0048.1	0.192
MA0050.1	MA0050.1	2.12062e-5
MA0051.1	MA0051.1	0.00243
MA0052.1	MA0052.1	0.953
MA0055.1	MA0055.1	0.0937
MA0057.1	MA0057.1	0.921
MA0058.1	MA0058.1	0.00447
MA0059.1	MA0059.1	1.28302e-4
MA0060.1	MA0060.1	0.00203
MA0061.1	MA0061.1	7.00791e-11
MA0062.2	MA0062.2	1.51164e-11
MA0065.2	MA0065.2	0.427
MA0066.1	MA0066.1	0.582
MA0067.1	MA0067.1	5.32808e-4
MA0068.1	MA0068.1	5.19127e-5
MA0069.1	MA0069.1	0.424
MA0070.1	MA0070.1	0.845
MA0071.1	MA0071.1	0.603
MA0072.1	MA0072.1	0.0893
MA0073.1	MA0073.1	0.515
MA0074.1	MA0074.1	0.558
MA0076.1	MA0076.1	0.00126
MA0077.1	MA0077.1	0.543
MA0078.1	MA0078.1	0.518
MA0079.2	MA0079.2	0.263
MA0080.2	MA0080.2	6.67227e-10
MA0081.1	MA0081.1	0.0017
MA0083.1	MA0083.1	0.873
MA0084.1	MA0084.1	0.468
MA0087.1	MA0087.1	0.873
MA0088.1	MA0088.1	0.175
MA0090.1	MA0090.1	0.0329
MA0091.1	MA0091.1	0.766
MA0092.1	MA0092.1	0.111
MA0093.1	MA0093.1	0.0187
MA0099.2	MA0099.2	1.79377e-6
MA0100.1	MA0100.1	0.298
MA0101.1	MA0101.1	5.73466e-16
MA0102.2	MA0102.2	0.583
MA0103.1	MA0103.1	0.644
MA0104.2	MA0104.2	1.06591e-4
MA0105.1	MA0105.1	1.43349e-6
MA0106.1	MA0106.1	0.658
MA0107.1	MA0107.1	5.90608e-16
MA0108.2	MA0108.2	0.601
MA0111.1	MA0111.1	0.449
MA0112.2	MA0112.2	0.609
MA0113.1	MA0113.1	0.885
MA0114.1	MA0114.1	0.00737
MA0115.1	MA0115.1	0.175
MA0116.1	MA0116.1	0.937
MA0117.1	MA0117.1	0.0252
MA0119.1	MA0119.1	0.0407
MA0122.1	MA0122.1	0.539
MA0124.1	MA0124.1	0.954
MA0125.1	MA0125.1	0.0857
MA0131.1	MA0131.1	0.372
MA0135.1	MA0135.1	0.765
MA0136.1	MA0136.1	2.503e-18
MA0137.2	MA0137.2	0.00456
MA0138.2	MA0138.2	4.47061e-4
MA0139.1	MA0139.1	0.267
MA0140.1	MA0140.1	0.857
MA0141.1	MA0141.1	0.705
MA0142.1	MA0142.1	0.579
MA0143.1	MA0143.1	0.156
MA0144.1	MA0144.1	0.199
MA0145.1	MA0145.1	0.028
MA0146.1	MA0146.1	0.913
MA0147.1	MA0147.1	6.24597e-6
MA0148.1	MA0148.1	0.595
MA0149.1	MA0149.1	0.227
MA0150.1	MA0150.1	0.0344
MA0152.1	MA0152.1	0.0561
MA0153.1	MA0153.1	2.30202e-6
MA0154.1	MA0154.1	0.862
MA0155.1	MA0155.1	0.295
MA0156.1	MA0156.1	2.29709e-15
MA0157.1	MA0157.1	0.182
MA0159.1	MA0159.1	0.854
MA0160.1	MA0160.1	0.945
MA0162.1	MA0162.1	0.0203
MA0163.1	MA0163.1	0.531
MA0164.1	MA0164.1	0.0365
MA0258.1	MA0258.1	0.567
MA0259.1	MA0259.1	0.0168

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13219

Novel motif	Logo	P-value
1	1	0.851
10	10	0.194
100	100	0.472
101	101	0.474
102	102	0.377
103	103	0.289
104	104	0.64
105	105	0.455
106	106	0.196
107	107	0.892
108	108	0.683
109	109	0.873
11	11	0.637
110	110	0.355
111	111	0.141
112	112	0.277
113	113	0.824
114	114	0.858
115	115	0.735
116	116	0.536
117	117	3.10959e-4
118	118	0.468
119	119	0.878
12	12	0.396
120	120	0.137
121	121	0.308
122	122	0.78
123	123	0.544
124	124	0.259
125	125	0.514
126	126	0.416
127	127	0.488
128	128	0.115
129	129	0.64
13	13	0.109
130	130	0.647
131	131	0.242
132	132	0.469
133	133	0.125
134	134	0.448
135	135	0.173
136	136	0.761
137	137	0.776
138	138	0.953
139	139	0.189
14	14	0.084
140	140	0.413
141	141	0.967
142	142	0.486
143	143	0.0152
144	144	0.425
145	145	0.173
146	146	0.832
147	147	0.596
148	148	0.138
149	149	0.13
15	15	0.457
150	150	0.836
151	151	0.966
152	152	0.544
153	153	0.456
154	154	0.143
155	155	0.291
156	156	0.698
157	157	0.885
158	158	0.0151
159	159	0.535
160	160	0.171
161	161	0.237
162	162	0.117
163	163	0.749
164	164	0.0464
165	165	0.546
166	166	0.199
167	167	0.0674
168	168	0.557
169	169	0.277
17	17	0.856
18	18	0.252
19	19	0.0213
2	2	0.00797
20	20	0.00313
21	21	0.203
22	22	0.402
23	23	0.758
24	24	0.529
25	25	0.362
26	26	0.403
27	27	0.109
28	28	0.505
29	29	0.183
3	3	0.922
30	30	0.0986
31	31	0.479
32	32	0.0892
33	33	0.214
34	34	0.255
35	35	0.263
36	36	0.147
37	37	0.321
38	38	0.635
39	39	0.626
4	4	0.808
40	40	0.984
41	41	0.164
42	42	0.728
43	43	0.811
44	44	0.72
45	45	0.296
46	46	0.793
47	47	0.714
48	48	0.742
49	49	0.519
5	5	0.293
50	50	0.63
51	51	0.778
52	52	0.497
53	53	0.638
54	54	0.736
55	55	0.982
56	56	0.708
57	57	0.807
58	58	0.645
59	59	0.421
6	6	0.875
60	60	0.52
61	61	0.188
62	62	0.253
63	63	0.706
64	64	0.651
65	65	0.859
66	66	0.727
67	67	0.705
68	68	0.196
69	69	0.591
7	7	0.695
70	70	0.0152
71	71	0.174
72	72	0.806
73	73	0.432
74	74	0.735
75	75	0.0231
76	76	0.0247
77	77	0.0235
78	78	0.0322
79	79	0.858
8	8	0.856
80	80	0.42
81	81	0.827
82	82	0.9
83	83	0.169
84	84	0.242
85	85	0.513
86	86	0.17
87	87	0.604
88	88	0.552
89	89	0.433
9	9	0.842
90	90	0.376
91	91	0.616
92	92	0.515
93	93	0.146
94	94	0.422
95	95	0.534
96	96	0.426
97	97	0.556
98	98	0.758
99	99	0.0348

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13219

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011448 CD4-positiveCD25-CD44- naive conventional T cells stimulated with PMA an ionomycin- 02hr- (C57BL_6J) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000898 (naive T cell)
0000895 (naive thymus-derived CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000359 (2 hr sample)
0000409 (T cell expansion sample)
0011448 (CD4-positiveCD25-CD44- naive conventional T cells stimulated with PMA an ionomycin- 02hr- (C57BL_6J) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)
CL:0002427 (resting double-positive thymocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000483,UBERON:0002530,UBERON:0002384,UBERON:0006562,UBERON:0000974,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0002368,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003929,UBERON:0000072,UBERON:0004807,UBERON:0003104,UBERON:0004177,UBERON:0005057,UBERON:0005058,UBERON:0001048,UBERON:0000925,UBERON:0003408,UBERON:0006598,UBERON:0003351,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0002390,UBERON:0007026,UBERON:0001041,UBERON:0000949,UBERON:0001557,UBERON:0001042,UBERON:0002193,UBERON:0002405,UBERON:0009113,UBERON:0008814,UBERON:0009142,UBERON:0003081,UBERON:0003295,UBERON:0009722,UBERON:0006595,UBERON:0006603,UBERON:0009145,UBERON:0005562,UBERON:0003061,UBERON:0007690
+|DRA_sample_Accession=CAGE@SAMD00005993
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002420,CL:0002419,CL:0000624,CL:0000893,CL:0002489,CL:0000790,CL:0000838,CL:0002031,CL:0000827,CL:0000898,CL:0000037,CL:0000809,CL:0000810,CL:0000566,CL:0000837,CL:0000895,CL:0000051,CL:0000808,CL:0000894,CL:0000806,CL:0000807,CL:0000805,CL:0002425,CL:0002436,CL:0002427,CL:0002428,CL:0002429,CL:0002433,CL:0002431,CL:0002432
+|accession_numbers=CAGE;DRX008791;DRR009663;DRZ001088;DRZ002473;DRZ012438;DRZ013823
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000898,CL:0000895
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000350,FF:0000359,FF:0000409,FF:0011448
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:30841099..30841116,+!p1@Irf4!3.38!3698.94!Irf4;;chr7:31206743..31206761,+!p1@Nfkbid!3.35!2984.16!Nfkbid;;chr4:48058047..48058062,+!p1@Nr4a3!3.12!1965.55!Nr4a3;;chr15:101097270..101097290,+!p1@Nr4a1!3.02!9969.53!Nr4a1;;chr7:31208447..31208496,+!p2@Nfkbid!2.75!561.04!Nfkbid;;chr10:67000609..67000625,+!p1@Egr2!2.72!1158.97!Egr2;;chr4:48058129..48058179,+!p2@Nr4a3!2.70!924.28!Nr4a3;;chr2:56967334..56967366,-!p1@Nr4a2!2.59!759.98!Nr4a2;;chr7:31208285..31208312,+!p3@Nfkbid!2.42!283.97!Nfkbid;;chr11:23670750..23670789,-!p2@Rel!2.37!424.48!Rel;;chr17:51971932..51971958,-!p2@Satb1!2.37!314.10!Satb1;;chr3:135354384..135354443,-!p1@Nfkb1!2.36!1321.16!Nfkb1;;chr4:48058016..48058032,+!p3@Nr4a3!2.36!377.31!Nr4a3;;chr7:31208400..31208427,+!p5@Nfkbid!2.33!214.70!Nfkbid;;chr15:61816932..61816952,+!p2@Myc!2.29!1510.66!Myc;;chr11:23670827..23670846,-!p3@Rel!2.26!179.08!Rel;;chr14:70477113..70477173,+!p1@Egr3!2.16!142.62!Egr3;;chr17:51971960..51971979,-!p1@Satb1!2.14!180.91!Satb1;;chr18:80909801..80909819,-!p1@Nfatc1!2.07!644.39!Nfatc1;;chr11:11590140..11590187,+!p3@Ikzf1!2.04!129.38!Ikzf1;;chr11:23670953..23671028,-!p1@Rel!2.01!538.24!Rel;;chr18:3281750..3281776,-!p2@Crem!2.00!195.13!Crem;;chr5:108155007..108155034,-!p1@Gfi1!2.00!98.13!Gfi1;;chr12:86814833..86814846,+!p1@Fos!1.98!2042.28!Fos;;chr7:31207408..31207450,+!p4@Nfkbid!1.98!150.50!Nfkbid;;chr11:11590117..11590138,+!p4@Ikzf1!1.97!92.92!Ikzf1;;chr12:56593574..56593592,-!p1@Nfkbia!1.95!4178.61!Nfkbia;;chr1:193007123..193007139,-!p1@Atf3!1.95!468.83!Atf3;;chr4:48058196..48058205,+!p4@Nr4a3!1.94!87.01!Nr4a3;;chr15:57526345..57526392,+!p3@Zhx2!1.92!145.43!Zhx2;;chr7:19895384..19895399,-!p2@Fosb!1.91!110.52!Fosb;;chr12:85560016..85560038,-!p6@C130039O16Rik!1.91!79.40!C130039O16Rik;;chr3:130815703..130815721,+!p2@Lef1!1.90!93.62!Lef1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.86!212.87!Zc3h12a;;chr1:52065508..52065522,+!p2@Stat4!1.83!78.42!Stat4;;chr11:52096066..52096081,-!p2@Tcf7!1.82!78.84!Tcf7;;chr19:5447886..5447905,+!p1@Fosl1!1.82!64.48!Fosl1;;chr15:79177964..79177986,+!p1@Maff!1.80!202.59!Maff;;chr4:48058252..48058261,+!p6@Nr4a3!1.80!61.52!Nr4a3;;chr16:92826249..92826325,-!p1@Runx1!1.79!143.60!Runx1;;chr2:126501799..126501832,-!p4@Gabpb1!1.79!61.24!Gabpb1;;chr8:87502608..87502623,-!p1@Junb!1.78!896.96!Junb;;chr19:5637528..5637548,+!p2@Rela!1.78!331.84!Rela;;chr7:19895354..19895369,-!p1@Fosb!1.78!79.55!Fosb;;chr9:51021788..51021802,+!p1@Pou2af1!1.78!70.11!Pou2af1;;chr10:66998241..66998263,+!p2@Egr2!1.78!59.55!Egr2;;chr17:45692676..45692695,+!p2@Nfkbie!1.76!110.80!Nfkbie;;chr11:23670864..23670877,-!p5@Rel!1.76!57.16!Rel;;chr15:61817095..61817111,+!p1@Myc!1.75!3056.52!Myc;;chr10:67000811..67000822,+!p3@Egr2!1.75!55.47!Egr2;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.74!68.00!Zbtb11;;chr16:55838757..55838774,-!p2@Nfkbiz!1.73!62.37!Nfkbiz;;chr12:87027663..87027678,+!p2@Batf!1.71!50.26!Batf;;chr7:147129712..147129774,+!p1@Utf1!1.71!49.98!Utf1;;chr11:23670933..23670942,-!p4@Rel!1.70!48.85!Rel;;chr16:55822241..55822258,-!p1@Nfkbiz!1.67!1326.79!Nfkbiz;;chr4:134708451..134708469,+!p1@Runx3!1.66!77.72!Runx3;;chr18:3281725..3281740,-!p3@Crem!1.65!54.91!Crem;;chr4:48064149..48064169,+!p9@Nr4a3!1.64!42.52!Nr4a3;;chr19:46379199..46379301,+!p1@Nfkb2!1.63!227.80!Nfkb2;;chr11:98407264..98407295,-!p1@Ikzf3!1.62!41.11!Ikzf3;;chr11:100721640..100721658,+!p2@Stat5a!1.59!37.73!Stat5a;;chr11:11584970..11585030,+!p2@Ikzf1!1.58!52.09!Ikzf1;;chr11:52095821..52095836,-!p3@Tcf7!1.58!37.03!Tcf7;;chr2:56967316..56967327,-!p3@Nr4a2!1.57!36.32!Nr4a2;;chr1:52065530..52065548,+!p3@Stat4!1.57!36.18!Stat4;;chr4:48061898..48061935,+!p8@Nr4a3!1.57!36.04!Nr4a3;;chr4:48061952..48061964,+!p10@Nr4a3!1.57!35.90!Nr4a3;;chr19:46380235..46380277,+!p3@Nfkb2!1.56!74.76!Nfkb2;;chr5:22939909..22939948,+!p6@Mll5!1.56!45.90!Mll5;;chr19:46380399..46380417,+!p4@Nfkb2!1.56!34.92!Nfkb2;;chr7:31208324..31208333,+!p7@Nfkbid!1.55!34.77!Nfkbid;;chr18:35020854..35020869,+!p1@Egr1!1.54!1237.11!Egr1;;chr17:71200529..71200556,-!p1@Tgif1!1.54!509.94!Tgif1;;chr17:45692642..45692663,+!p1@Nfkbie!1.54!105.17!Nfkbie;;chr19:46380433..46380451,+!p5@Nfkb2!1.54!33.37!Nfkb2;;chr13:112476433..112476448,+!p2@Mier3!1.53!60.12!Mier3;;chr6:99216488..99216534,-!p2@Foxp1!1.52!89.26!Foxp1;;chr4:63064364..63064384,-!p1@Akna!1.51!89.68!Akna;;chr11:98821858..98821907,+!p6@Rara!1.51!51.11!Rara;;chr4:48064302..48064316,+!p11@Nr4a3!1.51!31.68!Nr4a3;;chr5:108155037..108155060,-!p2@Gfi1!1.51!31.11!Gfi1;;chr7:31208431..31208442,+!p6@Nfkbid!1.50!30.97!Nfkbid;;chr17:51971991..51972003,-!p4@Satb1!1.50!30.55!Satb1;;chr4:6917606..6917681,-!p1@Tox!1.49!121.64!Tox;;chr11:23670799..23670808,-!p7@Rel!1.49!29.99!Rel;;chr11:11590085..11590106,+!p7@Ikzf1!1.49!29.99!Ikzf1;;chr4:48064251..48064268,+!p12@Nr4a3!1.48!29.14!Nr4a3;;chr2:9800207..9800234,-!p1@Gata3!1.47!85.18!Gata3;;chr2:126501847..126501876,-!p5@Gabpb1!1.47!32.38!Gabpb1;;chr10:13685585..13685645,+!p2@Hivep2!1.46!94.33!Hivep2;;chr7:31208381..31208390,+!p8@Nfkbid!1.46!27.88!Nfkbid;;chr15:79178060..79178074,+!p2@Maff!1.45!35.34!Maff;;chr7:20214704..20214800,-!p1@Relb!1.44!84.19!Relb;;chr7:29551464..29551487,-!p2@Nfkbib!1.43!96.86!Nfkbib;;chr12:109241728..109241781,-!p2@Bcl11b!1.43!27.31!Bcl11b;;chr9:32503336..32503360,+!p4@Ets1!1.43!26.05!Ets1;;chr4:32325688..32325777,+!p1@Bach2!1.42!212.59!Bach2;;chr11:100721761..100721851,+!p1@Stat5a!1.41!173.03!Stat5a;;chr11:11585678..11585745,+!p5@Ikzf1!1.40!34.92!Ikzf1;;chr1:38721792..38721845,-!p1@Aff3!1.40!29.85!Aff3;;chr11:96976641..96976646,-!p1@Tbx21!1.40!23.93!Tbx21;;chr5:32438831..32438878,+!p1@Fosl2!1.39!234.84!Fosl2;;chr15:57526469..57526534,+!p1@Zhx2!1.38!80.67!Zhx2;;chr15:61819047..61819076,+!p5@Myc!1.36!26.33!Myc;;chr12:86815639..86815664,+!p2@Fos!1.36!22.10!Fos;;chr2:91076997..91077012,-!p4@Ddb2!1.36!22.10!Ddb2;;chr11:98407234..98407259,-!p2@Ikzf3!1.36!21.96!Ikzf3;;chr15:79178029..79178044,+!p4@Maff!1.35!26.05!Maff;;chr15:61818965..61819046,+!p3@Myc!1.34!36.18!Myc;;chr17:71202822..71202877,-!p3@Tgif1!1.33!58.43!Tgif1;;chr1:92949999..92950097,+!p1@Lrrfip1!1.32!507.40!Lrrfip1;;chr11:11585912..11585950,+!p6@Ikzf1!1.32!25.34!Ikzf1;;chr3:135354375..135354381,-!p10@Nfkb1!1.32!24.36!Nfkb1;;chr8:123260252..123260264,+!p1@Irf8!1.31!134.03!Irf8;;chr5:32438894..32438908,+!p2@Fosl2!1.31!40.41!Fosl2;;chr12:119540395..119540415,-!p5@Sp4!1.31!29.28!Sp4;;chr13:44829403..44829438,+!p11@Jarid2!1.31!22.24!Jarid2;;chr4:133801432..133801448,-!p3@Zfp593!1.30!29.00!Zfp593;;chr7:147129777..147129814,+!p2@Utf1!1.30!19.01!Utf1;;chr18:75527009..75527027,+!p1@Smad7!1.29!374.64!Smad7;;chr11:52096804..52096896,-!p1@Tcf7!1.29!146.28!Tcf7;;chr4:124805092..124805135,-!p2@Zc3h12a!1.29!77.86!Zc3h12a;;chr11:98821937..98821987,+!p4@Rara!1.29!41.25!Rara;;chr15:79178013..79178028,+!p3@Maff!1.29!24.22!Maff;;chr17:71201572..71201601,-!p10@Tgif1!1.29!18.44!Tgif1;;chr11:23671230..23671264,-!p6@Rel!1.29!18.44!Rel;;chr12:81213989..81214006,-!p1@Zfp36l1!1.28!889.08!Zfp36l1;;chr19:5447692..5447711,+!p2@Fosl1!1.28!17.88!Fosl1;;chr12:109242266..109242295,-!p1@Bcl11b!1.27!144.17!Bcl11b;;chr7:71083729..71083742,-!p4@Klf13!1.27!30.41!Klf13;;chr11:62271274..62271337,-!p4@Ncor1!1.27!25.48!Ncor1;;chr4:48058102..48058110,+!p5@Nr4a3!1.27!19.71!Nr4a3;;chr7:31207452..31207463,+!p11@Nfkbid!1.27!17.46!Nfkbid;;chr12:85534957..85535017,-!p2@C130039O16Rik!1.26!85.04!C130039O16Rik;;chr12:77470718..77470752,-!p4@Zbtb25!1.26!24.22!Zbtb25;;chr4:48057987..48057996,+!p7@Nr4a3!1.26!20.13!Nr4a3;;chr12:85560051..85560070,-!p11@C130039O16Rik!1.26!17.04!C130039O16Rik;;chr7:31210290..31210308,+!p10@Nfkbid!1.26!17.04!Nfkbid;;chr11:53583544..53583559,+!p1@Irf1!1.25!275.52!Irf1;;chr3:52072329..52072346,+!p1@Foxo1!1.25!250.04!Foxo1;;chr11:100683839..100683890,-!p2@Stat5b!1.25!38.58!Stat5b;;chr5:53981592..53981616,+!p3@Rbpj!1.25!31.26!Rbpj;;chr3:133207214..133207228,-!p2@Tet2!1.25!20.41!Tet2;;chr10:66998213..66998240,+!p4@Egr2!1.25!16.89!Egr2;;chr3:135354349..135354371,-!p6@Nfkb1!1.24!32.94!Nfkb1;;chr5:104182754..104182777,+!p11@Aff1!1.24!17.88!Aff1;;chr11:11590188..11590200,+!p8@Ikzf1!1.24!16.47!Ikzf1;;chr11:11590205..11590216,+!p9@Ikzf1!1.24!16.47!Ikzf1;;chr1:64579145..64579168,+!p6@Creb1!1.24!16.33!Creb1;;chr3:30993974..30994045,+!p1@Skil!1.23!430.53!Skil;;chr12:25257141..25257173,+!p1@Grhl1!1.23!33.09!Grhl1;;chr11:100721732..100721742,+!p3@Stat5a!1.23!15.91!Stat5a;;chr8:107694661..107694713,+!p2@Cbfb!1.22!102.07!Cbfb;;chr13:42147384..42147441,+!p1@Hivep1!1.20!139.24!Hivep1;;chr15:100430393..100430410,-!p3@Pou6f1!1.20!14.92!Pou6f1;;chr1:92950128..92950139,+!p4@Lrrfip1!1.20!14.78!Lrrfip1;;chr16:23988711..23988727,-!p1@Bcl6!1.19!170.07!Bcl6;;chr15:61818914..61818943,+!p7@Myc!1.19!17.88!Myc;;chr17:51965903..51965926,-!p5@Satb1!1.19!14.50!Satb1;;chr4:48063649..48063653,+!p14@Nr4a3!1.19!14.50!Nr4a3;;chr17:71201096..71201114,-!p6@Tgif1!1.18!16.75!Tgif1;;chr11:98798983..98799049,+!p1@Rara!1.17!346.06!Rara;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!1.17!63.21!Zbtb11;;chr3:135354452..135354475,-!p5@Nfkb1!1.17!35.20!Nfkb1;;chr7:20162663..20162678,+!p1@Zfp296!1.17!18.02!Zfp296;;chr4:32325955..32325971,+!p3@Bach2!1.17!17.88!Bach2;;chr4:48064126..48064140,+!p13@Nr4a3!1.17!13.66!Nr4a3;;chr3:130813200..130813252,+!p1@Lef1!1.16!59.98!Lef1;;chr11:11586218..11586285,+!p1@Ikzf1!1.16!42.52!Ikzf1;;chr1:138521574..138521597,+!p3@Zfp281!1.16!32.24!Zfp281;;chr15:61818593..61818614,+!p4@Myc!1.16!23.23!Myc;;chr17:51972530..51972571,-!p7@Satb1!1.16!13.52!Satb1;;chr5:92391466..92391471,+!p2@Thap6!1.15!19.15!Thap6;;chr11:98821917..98821934,+!p11@Rara!1.15!15.21!Rara;;chr1:36364590..36364608,+!p1@Arid5a!1.14!127.70!Arid5a;;chr11:6375884..6375920,-!p2@Purb!1.14!45.19!Purb;;chr6:140572167..140572236,+!p2@Aebp2!1.13!125.16!Aebp2;;chr5:104182694..104182724,+!p8@Aff1!1.12!15.35!Aff1;;chr4:63064279..63064293,-!p7@Akna!1.12!12.11!Akna;;chr5:134720044..134720103,-!p6@Gtf2i!1.11!11.83!Gtf2i;;chr15:100430414..100430470,-!p1@Pou6f1!1.10!36.46!Pou6f1;;chr3:52072315..52072327,+!p2@Foxo1!1.08!69.41!Foxo1;;chr18:39649174..39649196,-!p5@Nr3c1!1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a3;;chr13:37918773..37918818,+!p3@Rreb1!0.27!6.48!Rreb1;;chr7:133838869..133838945,+!p2@Bola2!0.27!6.34!Bola2;;chr8:4613182..4613207,+!p2@Zfp958!0.27!6.05!Zfp958;;chr18:74376000..74376061,+!p3@Cxxc1!0.27!5.35!Cxxc1;;chr9:71959562..71959624,-!p3@Tcf12!0.27!5.07!Tcf12;;chr14:79881330..79881415,+!p3@Elf1!0.27!4.93!Elf1;;chr18:24113349..24113374,+!p2@Zfp397!0.27!2.82!Zfp397;;chr6:28211956..28211967,-!p2@Zfp800!0.27!2.82!Zfp800;;chr13:59924354..59924366,-!p3@Zcchc6!0.27!2.39!Zcchc6;;chr17:87153505..87153516,+!p6@Epas1!0.27!1.55!Epas1;;chr5:77695181..77695196,+!p6@Rest!0.27!1.27!Rest;;chr5:31262543..31262555,-!p3@Preb!0.27!1.27!Preb;;chr3:130813557..130813582,+!p5@Lef1!0.27!1.13!Lef1;;chr3:94181355..94181373,+!p5@Rorc!0.27!0.84!Rorc;;chr3:130815472..130815497,+!p6@Lef1!0.27!0.84!Lef1;;chr2:73110004..73110016,+!p2@Sp9!0.27!0.84!Sp9;;chr16:3872231..3872249,-!p9@Zfp597!0.27!0.84!Zfp597;;chr11:98407087..98407102,-!p11@Ikzf3!0.27!0.84!Ikzf3;;chr11:52074095..52074127,-!p8@Tcf7!0.27!0.84!Tcf7;;chr12:86815252..86815257,+!p11@Fos!0.27!0.84!Fos;;chr13:112476407..112476418,+!p6@Mier3!0.27!0.84!Mier3;;chr14:75684150..75684197,+!p1@Zc3h13!0.26!52.94!Zc3h13;;chr7:30954720..30954785,-!p1@LOC677248,p1@Zfp146!0.26!41.81!Zfp146;;chr16:50432467..50432522,-!p1@Bbx!0.26!31.54!Bbx;;chr2:75542592..75542609,-!p2@Nfe2l2!0.26!27.45!Nfe2l2;;chr11:5420954..5420969,+!p2@Xbp1!0.26!19.85!Xbp1;;chr14:56223010..56223067,+!p1@Irf9!0.26!12.39!Irf9;;chr10:114821393..114821431,-!p5@Thap2!0.26!3.80!Thap2;;chr19:9016651..9016662,+!p3@Mta2!0.26!2.39!Mta2;;chr18:36953486..36953503,+!p2@Zmat2!0.26!1.97!Zmat2;;chr12:85534895..85534915,-!p8@C130039O16Rik!0.26!1.69!C130039O16Rik;;chr18:80904923..80904933,-!p3@Nfatc1!0.26!1.41!Nfatc1;;chr10:44178375..44178390,-!p2@Prdm1!0.26!1.41!Prdm1;;chr4:40917988..40918060,+!p1@Nfx1!0.25!110.38!Nfx1;;chr2:167514456..167514473,+!p1@Cebpb!0.25!71.94!Cebpb;;chr9:110034519..110034606,+!p1@Smarcc1!0.25!69.41!Smarcc1;;chr18:76401546..76401613,+!p1@Smad2!0.25!33.93!Smad2;;chr18:24179250..24179314,-!p1@Zfp191!0.25!25.48!Zfp191;;chr4:142802594..142802631,-!p1@Prdm2!0.25!15.49!Prdm2;;chr15:96117968..96118035,+!p1@Arid2!0.25!14.36!Arid2;;chr17:71199121..71199165,-!p2@Tgif1!0.25!10.84!Tgif1;;chr3:95238432..95238455,+!p2@Arnt!0.25!8.59!Arnt;;chr12:100631123..100631206,-!p3@Foxn3!0.25!8.59!Foxn3;;chr3:95032558..95032641,-!p2@Mllt11!0.25!8.31!Mllt11;;chr17:48061409..48061431,-!p4@Foxp4!0.25!7.74!Foxp4;;chr8:72520139..72520157,-!p6@Gatad2a!0.25!5.63!Gatad2a;;chr7:30875490..30875555,-!p1@Zfp566,p1@Zfp82!0.25!3.80!Zfp566;;chr15:102087737..102087801,-!p3@Rarg!0.25!1.83!Rarg;;chr12:109242296..109242307,-!p3@Bcl11b!0.25!1.55!Bcl11b;;chr3:54611659..54611668,-!p4@Rfxap!0.25!1.41!Rfxap;;chr3:96002383..96002407,-!p4@Bola1!0.25!1.27!Bola1;;chr13:112476296..112476308,+!p4@Mier3!0.25!0.99!Mier3;;chr8:124900511..124900552,+!p1@Zc3h18!0.24!55.47!Zc3h18;;chr8:107821563..107821642,+!p1@E2f4!0.24!44.63!E2f4;;chr13:5860776..5860796,+!p1@Klf6!0.24!37.87!Klf6;;chr6:120314112..120314181,+!p1@Kdm5a!0.24!29.99!Kdm5a;;chr6:86475924..86475935,-!p2@Pcbp1!0.24!25.91!Pcbp1;;chr4:151235807..151235870,-!p1@Camta1!0.24!24.64!Camta1;;chr5:104183173..104183207,+!p1@Aff1!0.24!20.13!Aff1;;chr6:120314411..120314466,+!p2@Kdm5a!0.24!10.56!Kdm5a;;chr6:29476690..29476724,+!p1@Irf5!0.24!6.62!Irf5;;chr12:3806513..3806527,+!p9@Dnmt3a!0.24!1.55!Dnmt3a;;chr17:46693053..46693064,-!p4@Srf!0.24!1.41!Srf;;chr13:44825963..44825967,+!p12@Jarid2!0.24!1.13!Jarid2;;chr2:119722948..119723028,+!p1@Mga!0.23!43.36!Mga;;chr4:120887676..120887719,-!p1@Rlf!0.23!31.11!Rlf;;chr13:67627072..67627115,-!p1@Zfp58!0.23!29.00!Zfp87;;chr15:50721588..50721610,-!p1@Trps1!0.23!15.06!Trps1;;chr3:95032091..95032183,-!p1@Mllt11!0.23!12.39!Mllt11;;chr5:146041333..146041379,+!p@chr5:146041333..146041379,+!0.23!11.12!Zfp498;;chr6:133985993..133986029,+!p2@Etv6!0.23!9.15!Etv6;;chr2:168415815..168415872,-!p1@Nfatc2!0.23!7.74!Nfatc2;;chr17:46693078..46693097,-!p3@Srf!0.23!5.49!Srf;;chr17:34169293..34169320,+!p3@Rxrb!0.23!3.94!Rxrb;;chr4:151401710..151401733,-!p2@Zbtb48!0.23!3.94!Zbtb48;;chr13:55206625..55206636,+!p2@Zfp346!0.23!2.25!Zfp346;;
+|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790,CL:0002425,CL:0002427
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011448
 |is_obsolete=
+|library_id=CNhs13219
+|library_id_phase_based=2:CNhs13219
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11816
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11816
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD4%252bCD25-CD44-%2520naive%2520conventional%2520T%2520cells%252c%2520PMA%2520and%2520ionomycin%2520stimulation%252c%252002hr%252c%2520pool1%2520%2528C57BL_6J%2529.CNhs13219.11816-124E7.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/CD4%252bCD25-CD44-%2520naive%2520conventional%2520T%2520cells%252c%2520PMA%2520and%2520ionomycin%2520stimulation%252c%252002hr%252c%2520pool1%2520%2528C57BL_6J%2529.CNhs13219.11816-124E7.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD4%252bCD25-CD44-%2520naive%2520conventional%2520T%2520cells%252c%2520PMA%2520and%2520ionomycin%2520stimulation%252c%252002hr%252c%2520pool1%2520%2528C57BL_6J%2529.CNhs13219.11816-124E7.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD4%252bCD25-CD44-%2520naive%2520conventional%2520T%2520cells%252c%2520PMA%2520and%2520ionomycin%2520stimulation%252c%252002hr%252c%2520pool1%2520%2528C57BL_6J%2529.CNhs13219.11816-124E7.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/CD4%252bCD25-CD44-%2520naive%2520conventional%2520T%2520cells%252c%2520PMA%2520and%2520ionomycin%2520stimulation%252c%252002hr%252c%2520pool1%2520%2528C57BL_6J%2529.CNhs13219.11816-124E7.mm9.nobarcode.rdna.fa.gz
 |name=CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J)
 |namespace=
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13219,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.0572052190895671,0,-0.0391298564125206,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.189742791080293,0,0,0,0,0,0,0,0,0,0,0,0,0.0572052190895671,-0.176786650361163,0,0,0,0,0,-0.0477534360621278,-0.0417740847988257,0.731336845541841,-0.984211366477826,-0.269868638010351,0.265933359777829,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0522973125707489,0,0,0,0,0,0.0603453918266106,0.219985457418612,-0.158091042771083,-0.0079900994520699,0,0,-0.0760168881589905,-0.213187609404886,0,0,-0.0991298318976452,0.12455676864239,0.0854435549188326,0.152623623559254,0,0,0,0,0,0,0.12089387181986,0.131189127021002,0.582662496397386,0,0,0,0.153011413271348,0
 |rna_box=124
 |rna_catalog_number=
@@ Line 56: / Line 73: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=124E7
+|rna_tube_id=1.24E+09
 |rna_weight_ug=3.96836
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 97: @@
 |top_motifs=NFKB1_REL_RELA:5.43849691772;ATF4:4.51108690548;ATF5_CREB3:4.32912930062;SPZ1:3.81753098199;RUNX1..3:3.72745243471;NFATC1..3:3.67165424638;FOXP3:3.56398109608;NFE2L1:3.53539233068;CREB1:3.50130390971;AIRE:3.29387739393;ALX4:2.95675996042;bHLH_family:2.8734236242;STAT1,3:2.84351935011;HIF1A:2.54113039346;NANOG{mouse}:2.37606529702;STAT5{A,B}:2.36074750335;PAX2:2.33692984603;ZBTB16:2.19178350597;FOS_FOS{B,L1}_JUN{B,D}:2.04009233188;ETS1,2:1.998311376;TBX4,5:1.90409561224;FOSL2:1.87158612366;PAX8:1.86481722724;SPI1:1.7914311854;PDX1:1.75345876976;NFE2:1.67818986902;ELF1,2,4:1.63047106927;ELK1,4_GABP{A,B1}:1.57455060432;HSF1,2:1.43668803859;BPTF:1.42747043209;FOXD3:1.42410571601;SPIB:1.42138265406;JUN:1.38309228875;CRX:1.37829878833;PPARG:1.36627826638;AHR_ARNT_ARNT2:1.24445254003;HES1:1.23838394424;TLX2:1.19767293366;RORA:1.08312241843;ATF6:1.04738091352;DMAP1_NCOR{1,2}_SMARC:1.04649273726;PAX4:1.00559271713;YY1:0.992632801185;EVI1:0.913550589389;ATF2:0.898214167182;IRF1,2:0.89666520202;NR1H4:0.873824777594;STAT2,4,6:0.836581811063;EP300:0.816104806496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.797728056625;EGR1..3:0.775883749324;ZNF384:0.768868296323;CEBPA,B_DDIT3:0.703048205274;NKX6-1,2:0.701626115459;BACH2:0.66935981771;IKZF2:0.662727275449;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.63200518985;MYB:0.620283966697;FOX{D1,D2}:0.61680598412;NKX3-1:0.61460189273;MTE{core}:0.608117227782;FOXP1:0.591915932985;PITX1..3:0.587059372776;HMX1:0.584847155561;CDX1,2,4:0.542400890467;HMGA1,2:0.483809599001;POU3F1..4:0.441498081426;FOXQ1:0.416923925625;IRF7:0.329750672146;RFX2..5_RFXANK_RFXAP:0.289858507572;ALX1:0.276096505361;NANOG:0.267127686384;TFDP1:0.210678759331;NR6A1:0.18555238458;HLF:0.115723606608;E2F1..5:0.0758093411123;FOXN1:0.0750900190719;HOX{A4,D4}:0.0361116899771;NKX2-1,4:0.0327542647289;POU6F1:0.0251501974656;SRF:0.00518425081617;MAFB:0.00273412761859;FOX{I1,J2}:-0.0182037337257;NRF1:-0.0466941301427;MYOD1:-0.0524845794965;OCT4_SOX2{dimer}:-0.0701997426094;ZIC1..3:-0.13097477702;HOX{A5,B5}:-0.133324561026;RXR{A,B,G}:-0.178621156187;NFIL3:-0.224754132299;RXRA_VDR{dimer}:-0.235929523498;SOX17:-0.236492104854;CDC5L:-0.240325634877;ZFP161:-0.260846334856;TBP:-0.271627771888;SOX2:-0.335798576196;FOXM1:-0.345750186085;TFAP2B:-0.355186064944;HBP1_HMGB_SSRP1_UBTF:-0.356021162909;POU2F1..3:-0.360505426725;SMAD1..7,9:-0.369963633561;NFIX:-0.371450680861;AR:-0.387915829386;RREB1:-0.393067914608;GATA6:-0.40134094412;NKX2-2,8:-0.406862249833;CUX2:-0.410090852357;ZNF148:-0.440747969513;MED-1{core}:-0.465920907167;TAL1_TCF{3,4,12}:-0.475953578328;MEF2{A,B,C,D}:-0.477692023497;FOX{F1,F2,J1}:-0.522664461051;POU5F1:-0.52890842809;LEF1_TCF7_TCF7L1,2:-0.547568730396;LMO2:-0.561649668032;SNAI1..3:-0.567516492625;MZF1:-0.580368239943;ZEB1:-0.679201484759;EN1,2:-0.684017755529;UFEwm:-0.687621786808;NR5A1,2:-0.692230199603;TP53:-0.709474917183;FOXL1:-0.724850075651;ZNF143:-0.725162897327;PAX1,9:-0.752566809594;HNF1A:-0.754643983762;PBX1:-0.757662816593;HNF4A_NR2F1,2:-0.761652545276;PAX5:-0.768610271128;GLI1..3:-0.769773228658;BREu{core}:-0.800458503058;VSX1,2:-0.830936813877;PRDM1:-0.853844049492;PAX6:-0.866619686803;SP1:-0.888801037441;MAZ:-0.911355719298;IKZF1:-0.915178926507;TEF:-0.929568373428;ESRRA:-0.930625058916;HOXA9_MEIS1:-0.932515671991;FOXO1,3,4:-0.944796083043;KLF4:-0.990337897338;POU1F1:-0.994576215704;NHLH1,2:-1.01461554561;FOXA2:-1.02023015725;NKX2-3_NKX2-5:-1.02884116478;ARID5B:-1.04501656259;NKX3-2:-1.05952179621;TGIF1:-1.11107529744;NFE2L2:-1.11340804493;MYFfamily:-1.11558956623;SREBF1,2:-1.13283981857;REST:-1.14446426808;NFY{A,B,C}:-1.18555825847;LHX3,4:-1.20208534743;GZF1:-1.24201608705;HAND1,2:-1.24602931869;RBPJ:-1.25193342392;RFX1:-1.26589885408;ZBTB6:-1.30492741421;ESR1:-1.30884409927;GCM1,2:-1.36533847523;T:-1.39474186586;GATA4:-1.46916143326;DBP:-1.50161403222;TFCP2:-1.52709794608;GTF2A1,2:-1.53354099248;ZNF238:-1.54246083025;PRRX1,2:-1.57953544394;TFAP2{A,C}:-1.58780904411;MTF1:-1.59166605602;ONECUT1,2:-1.63670694775;PATZ1:-1.63869062957;TOPORS:-1.64747718297;SOX{8,9,10}:-1.64783091412;ADNP_IRX_SIX_ZHX:-1.76325640825;HIC1:-1.81578861129;NR3C1:-1.87028083583;GTF2I:-1.90079589022;MYBL2:-1.90829806148;SOX5:-1.94650401;TEAD1:-1.97185382159;XCPE1{core}:-2.29736907611;TFAP4:-2.53968094402;EBF1:-2.5532321233;GFI1B:-2.6413872279;GFI1:-2.84231960671;TLX1..3_NFIC{dimer}:-3.10738934718;ZNF423:-3.49499238277
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11816-124E7;search_select_hide=table117:11816-124E7
 }}

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FF:11816-124E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:22, 4 June 2020

CNhs13219

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0