FF:34-16E4: Difference between revisions

Latest revision as of 19:10, 4 June 2020

Name:	pancreas, adult
Species:	Mouse (Mus musculus)
Library ID:	CNhs10486
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	pancreas
dev stage	adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005580

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10486		CAGE		DRX009054		DRR009928

Accession ID Mm9

Library id		BAM		CTSS
CNhs10486		DRZ001353		DRZ002736

Accession ID Mm10

Library id		BAM		CTSS
CNhs10486		DRZ012703		DRZ014086

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10486

0	0
1	0
10	0
100	0
1000	0
1001	-0.0275
1002	-0.0468
1003	0.00645
1004	0
1005	-0.0372
1006	-0.0359
1007	-0.0264
1008	0
1009	-0.0572
101	-0.0417
1010	0
1011	-0.298
1012	0
1013	0.699
1014	-0.0851
1015	-0.315
1016	-0.453
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.957
1023	0
1024	0.0598
1025	0
1026	0
1027	0
1028	0
1029	-0.176
103	-0.0719
1030	0
1031	-0.495
1032	-0.11
1033	-0.0752
1034	1.206
1035	0
1036	0.00746
1037	0
1038	0.0167
1039	0.26
104	0
1040	-0.0865
1041	0.367

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10486

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.037
MA0003.1	MA0003.1	0.381
MA0004.1	MA0004.1	0.235
MA0006.1	MA0006.1	0.341
MA0007.1	MA0007.1	0.194
MA0009.1	MA0009.1	0.815
MA0014.1	MA0014.1	0.391
MA0017.1	MA0017.1	0.129
MA0018.2	MA0018.2	0.0204
MA0019.1	MA0019.1	0.902
MA0024.1	MA0024.1	1.2182e-4
MA0025.1	MA0025.1	0.816
MA0027.1	MA0027.1	0.993
MA0028.1	MA0028.1	0.338
MA0029.1	MA0029.1	0.748
MA0030.1	MA0030.1	0.926
MA0031.1	MA0031.1	0.312
MA0035.2	MA0035.2	0.0138
MA0038.1	MA0038.1	0.019
MA0039.2	MA0039.2	0.687
MA0040.1	MA0040.1	0.771
MA0041.1	MA0041.1	0.144
MA0042.1	MA0042.1	0.509
MA0043.1	MA0043.1	0.0354
MA0046.1	MA0046.1	1.83062e-8
MA0047.2	MA0047.2	7.3634e-4
MA0048.1	MA0048.1	0.415
MA0050.1	MA0050.1	0.874
MA0051.1	MA0051.1	0.726
MA0052.1	MA0052.1	5.15674e-4
MA0055.1	MA0055.1	0.395
MA0057.1	MA0057.1	0.4
MA0058.1	MA0058.1	0.309
MA0059.1	MA0059.1	0.0137
MA0060.1	MA0060.1	1.90313e-8
MA0061.1	MA0061.1	0.677
MA0062.2	MA0062.2	0.534
MA0065.2	MA0065.2	0.00487
MA0066.1	MA0066.1	0.456
MA0067.1	MA0067.1	0.35
MA0068.1	MA0068.1	0.0877
MA0069.1	MA0069.1	0.443
MA0070.1	MA0070.1	0.72
MA0071.1	MA0071.1	0.109
MA0072.1	MA0072.1	0.0444
MA0073.1	MA0073.1	0.628
MA0074.1	MA0074.1	0.107
MA0076.1	MA0076.1	0.399
MA0077.1	MA0077.1	0.75
MA0078.1	MA0078.1	0.246
MA0079.2	MA0079.2	0.514
MA0080.2	MA0080.2	0.679
MA0081.1	MA0081.1	0.455
MA0083.1	MA0083.1	0.00197
MA0084.1	MA0084.1	0.724
MA0087.1	MA0087.1	0.0797
MA0088.1	MA0088.1	0.101
MA0090.1	MA0090.1	0.306
MA0091.1	MA0091.1	0.00139
MA0092.1	MA0092.1	0.406
MA0093.1	MA0093.1	0.244
MA0099.2	MA0099.2	0.762
MA0100.1	MA0100.1	0.192
MA0101.1	MA0101.1	0.826
MA0102.2	MA0102.2	0.192
MA0103.1	MA0103.1	7.75027e-6
MA0104.2	MA0104.2	0.195
MA0105.1	MA0105.1	0.281
MA0106.1	MA0106.1	0.159
MA0107.1	MA0107.1	0.691
MA0108.2	MA0108.2	0.00394
MA0111.1	MA0111.1	0.687
MA0112.2	MA0112.2	2.61834e-5
MA0113.1	MA0113.1	0.401
MA0114.1	MA0114.1	0.331
MA0115.1	MA0115.1	0.504
MA0116.1	MA0116.1	0.365
MA0117.1	MA0117.1	0.332
MA0119.1	MA0119.1	0.494
MA0122.1	MA0122.1	0.38
MA0124.1	MA0124.1	0.284
MA0125.1	MA0125.1	0.86
MA0131.1	MA0131.1	0.406
MA0135.1	MA0135.1	0.891
MA0136.1	MA0136.1	0.448
MA0137.2	MA0137.2	0.0272
MA0138.2	MA0138.2	0.51
MA0139.1	MA0139.1	0.249
MA0140.1	MA0140.1	0.0381
MA0141.1	MA0141.1	0.00533
MA0142.1	MA0142.1	0.0759
MA0143.1	MA0143.1	0.867
MA0144.1	MA0144.1	0.0982
MA0145.1	MA0145.1	0.0394
MA0146.1	MA0146.1	0.113
MA0147.1	MA0147.1	0.0701
MA0148.1	MA0148.1	1.16122e-5
MA0149.1	MA0149.1	0.0225
MA0150.1	MA0150.1	0.275
MA0152.1	MA0152.1	0.836
MA0153.1	MA0153.1	0.00438
MA0154.1	MA0154.1	0.019
MA0155.1	MA0155.1	0.388
MA0156.1	MA0156.1	0.81
MA0157.1	MA0157.1	0.145
MA0159.1	MA0159.1	0.0186
MA0160.1	MA0160.1	0.0221
MA0162.1	MA0162.1	0.258
MA0163.1	MA0163.1	0.00214
MA0164.1	MA0164.1	0.447
MA0258.1	MA0258.1	0.00599
MA0259.1	MA0259.1	0.924

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10486

Novel motif	Logo	P-value
1	1	0.0447
10	10	0.139
100	100	0.458
101	101	0.769
102	102	0.87
103	103	0.0466
104	104	0.35
105	105	0.963
106	106	0.0474
107	107	0.255
108	108	0.973
109	109	0.0679
11	11	0.111
110	110	0.0527
111	111	0.00188
112	112	0.0451
113	113	0.623
114	114	0.0569
115	115	0.574
116	116	0.515
117	117	0.241
118	118	0.98
119	119	0.035
12	12	0.851
120	120	0.476
121	121	0.657
122	122	0.228
123	123	0.716
124	124	0.809
125	125	0.156
126	126	0.193
127	127	0.362
128	128	0.0286
129	129	0.0687
13	13	0.0732
130	130	0.561
131	131	0.68
132	132	0.651
133	133	0.25
134	134	0.75
135	135	0.825
136	136	0.736
137	137	0.226
138	138	0.354
139	139	0.0257
14	14	0.759
140	140	0.0201
141	141	0.45
142	142	0.401
143	143	0.546
144	144	0.284
145	145	0.0972
146	146	0.254
147	147	0.927
148	148	0.149
149	149	0.434
15	15	0.228
150	150	0.363
151	151	0.358
152	152	0.0445
153	153	0.523
154	154	0.999
155	155	0.116
156	156	0.224
157	157	0.495
158	158	0.157
159	159	0.548
160	160	0.249
161	161	0.369
162	162	0.703
163	163	0.525
164	164	0.108
165	165	0.152
166	166	0.506
167	167	0.528
168	168	0.901
169	169	0.0121
17	17	0.132
18	18	0.471
19	19	0.104
2	2	0.354
20	20	0.947
21	21	0.992
22	22	0.337
23	23	0.352
24	24	0.211
25	25	0.624
26	26	0.0535
27	27	0.332
28	28	0.563
29	29	0.458
3	3	0.259
30	30	0.998
31	31	0.328
32	32	0.38
33	33	0.843
34	34	0.861
35	35	0.122
36	36	0.111
37	37	0.0349
38	38	0.378
39	39	0.618
4	4	0.103
40	40	0.472
41	41	0.447
42	42	0.273
43	43	0.211
44	44	0.119
45	45	0.613
46	46	0.102
47	47	0.253
48	48	0.252
49	49	0.117
5	5	0.305
50	50	0.99
51	51	0.67
52	52	0.543
53	53	0.923
54	54	0.627
55	55	0.315
56	56	0.31
57	57	0.7
58	58	0.216
59	59	0.035
6	6	0.61
60	60	0.122
61	61	0.226
62	62	0.152
63	63	0.158
64	64	0.374
65	65	0.0802
66	66	0.598
67	67	0.437
68	68	0.204
69	69	0.33
7	7	0.123
70	70	0.011
71	71	0.0415
72	72	0.373
73	73	0.0444
74	74	0.541
75	75	0.185
76	76	0.85
77	77	0.0972
78	78	0.125
79	79	0.00625
8	8	0.0963
80	80	0.769
81	81	0.255
82	82	0.0513
83	83	0.576
84	84	0.622
85	85	0.0214
86	86	0.0265
87	87	0.179
88	88	0.477
89	89	0.264
9	9	0.734
90	90	0.079
91	91	0.311
92	92	0.109
93	93	0.132
94	94	0.724
95	95	0.696
96	96	0.353
97	97	0.00542
98	98	0.355
99	99	0.399

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10486

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011315 mouse pancreas- adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011315 (mouse pancreas- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005580
+|accession_numbers=CAGE;DRX009054;DRR009928;DRZ001353;DRZ002736;DRZ012703;DRZ014086
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!3.38!2370.83!Rbpjl;;chr5:144951153..144951203,+!p1@Bhlha15!2.79!876.12!Bhlha15;;chr2:19367259..19367278,+!p1@Ptf1a!2.74!553.55!Ptf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.85!90.27!Foxa3;;chr9:74709695..74709722,+!p1@Onecut1!1.71!50.44!Onecut1;;chr17:27865882..27865901,-!p1@Spdef!1.61!39.82!Spdef;;chr1:138857076..138857105,-!p1@Nr5a2!1.58!37.17!Nr5a2;;chr2:163332558..163332596,+!p2@Hnf4a!1.53!33.19!Hnf4a;;chr4:133109285..133109308,+!p1@Nr0b2!1.50!30.53!Nr0b2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!1.48!29.20!Ppard;;chr2:147871627..147871641,-!p1@Foxa2!1.40!23.89!Foxa2;;chr11:5420655..5420659,+!p3@Xbp1!1.37!22.57!Xbp1;;chr6:90412582..90412601,+!p1@Klf15!1.33!94.25!Klf15;;chr5:125538737..125538781,-!p2@Ncor2!1.33!71.68!Ncor2;;chr5:104121453..104121479,+!p4@Aff1!1.32!88.94!Aff1;;chr9:106362954..106362977,+!p6@Pcbp4!1.32!19.91!Pcbp4;;chr6:90412608..90412630,+!p2@Klf15!1.27!35.84!Klf15;;chr14:63864056..63864102,-!p1@Gata4!1.21!26.55!Gata4;;chr2:103143336..103143367,-!p1@Ehf!1.15!21.24!Ehf;;chr2:147872790..147872821,-!p2@Foxa2!1.15!13.27!Foxa2;;chr7:52071956..52071978,-!p1@Atf5!1.14!404.87!Atf5;;chr11:5420954..5420969,+!p2@Xbp1!1.13!155.31!Xbp1;;chr6:72849280..72849297,-!p6@Kcmf1!1.12!23.89!Kcmf1;;chr9:96620459..96620478,-!p9@Zbtb38!1.11!13.27!Zbtb38;;chr5:148081686..148081715,+!p1@Pdx1!1.11!11.95!Pdx1;;chr1:138857048..138857071,-!p2@Nr5a2!1.11!11.95!Nr5a2;;chr14:63890519..63890539,-!p3@Gata4!1.11!11.95!Gata4;;chr11:121380594..121380609,-!p2@Zfp750!1.10!19.91!Zfp750;;chr7:52471143..52471186,+!p1@Tead2!1.09!120.80!Tead2;;chr2:91864661..91864686,-!p1@Creb3l1!1.07!233.63!Creb3l1;;chr2:115890469..115890485,-!p7@Meis2!1.07!17.26!Meis2;;chr2:115888250..115888298,-!p10@Meis2!1.07!13.27!Meis2;;chr18:11052606..11052633,+!p4@Gata6!1.06!26.55!Gata6;;chr18:7004715..7004731,-!p1@Mkx!1.06!25.22!Mkx;;chr11:121380640..121380655,-!p1@Zfp750!1.05!17.26!Zfp750;;chr1:172797892..172797915,-!p1@Atf6!1.01!258.85!Atf6;;chr1:138857112..138857130,-!p7@Nr5a2!1.01!9.29!Nr5a2;;chr11:83664365..83664383,+!p1@Hnf1b!1.01!9.29!Hnf1b;;chr10:88969376..88969395,-!p1@Nr1h4!1.01!9.29!Nr1h4;;chr14:63890491..63890516,-!p2@Gata4!1.01!9.29!Gata4;;chr5:135582751..135582788,+!p1@Mlxipl!1.00!37.17!Mlxipl;;chr11:98636531..98636559,-!p1@Nr1d1!0.99!51.77!Nr1d1;;chr8:124806048..124806094,+!p1@Zfpm1!0.98!79.65!Zfpm1;;chr1:137155026..137155042,-!p1@Elf3!0.98!50.44!Elf3;;chr8:124806111..124806122,+!p3@Zfpm1!0.98!10.62!Zfpm1;;chr11:121380611..121380625,-!p3@Zfp750!0.98!10.62!Zfp750;;chr14:22807083..22807104,-!p1@Zfp503!0.96!146.02!Zfp503;;chr9:96096707..96096772,+!p1@Tfdp2!0.95!122.13!Tfdp2;;chr11:98614335..98614349,+!p8@Thra!0.95!7.96!Thra;;chr6:90412556..90412581,+!p3@Klf15!0.94!17.26!Klf15;;chr4:154010918..154010931,-!p1@Prdm16!0.93!22.57!Prdm16;;chr12:113916993..113917009,+!p2@Zbtb42!0.93!13.27!Zbtb42;;chr19:10315179..10315241,-!p1@Gm98!0.91!76.99!Gm98;;chr18:80904854..80904919,-!p2@Nfatc1!0.90!86.28!Nfatc1;;chr6:146744595..146744613,+!p2@Arntl2!0.90!11.95!Arntl2;;chr14:22808697..22808715,-!p4@Zfp503!0.89!7.96!Zfp503;;chr7:52472041..52472065,+!p2@Tead2!0.89!7.96!Tead2;;chr11:5420973..5420992,+!p1@Xbp1!0.88!736.74!Xbp1;;chr3:30408603..30408668,-!p1@Mecom!0.88!15.93!Mecom;;chr13:30841099..30841116,+!p1@Irf4!0.88!10.62!Irf4;;chr1:138846079..138846103,-!p6@Nr5a2!0.88!6.64!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.88!6.64!Hnf1a;;chr2:79296783..79296801,-!p1@Neurod1!0.88!6.64!Neurod1;;chr9:74709682..74709691,+!p3@Onecut1!0.88!6.64!Onecut1;;chr18:36441119..36441158,+!p2@Pura!0.86!15.93!Pura;;chr14:22807216..22807231,-!p3@Zfp503!0.85!10.62!Zfp503;;chr1:138846009..138846038,-!p3@Nr5a2!0.83!6.64!Nr5a2;;chr11:53164533..53164548,+!p4@Aff4!0.82!17.26!Aff4;;chr4:97444537..97444555,+!p8@Nfia!0.82!14.60!Nfia;;chr1:135557526..135557551,-!p1@Zbed6!0.82!9.29!Zbed6;;chr8:79423144..79423178,+!p3@Nr3c2!0.82!7.96!Nr3c2;;chr2:168415815..168415872,-!p1@Nfatc2!0.81!31.86!Nfatc2;;chr9:48644037..48644067,-!p2@Zbtb16!0.81!14.60!Zbtb16;;chr7:148513409..148513455,-!p2@Deaf1!0.80!26.55!Deaf1;;chr5:148081667..148081678,+!p3@Pdx1!0.80!5.31!Pdx1;;chr14:63890545..63890560,-!p5@Gata4!0.80!5.31!Gata4;;chr14:63890660..63890687,-!p7@Gata4!0.80!5.31!Gata4;;chr19:43686789..43686811,+!p1@Nkx2-3!0.80!5.31!Nkx2-3;;chr2:147871948..147871977,-!p3@Foxa2!0.80!5.31!Foxa2;;chr9:69137672..69137702,+!p2@Rora!0.79!23.89!Rora;;chr6:14851440..14851497,+!p2@Foxp2!0.79!13.27!Foxp2;;chr3:30408384..30408431,-!p4@Mecom!0.79!6.64!Mecom;;chr1:38721792..38721845,-!p1@Aff3!0.79!6.64!Aff3;;chr4:119486912..119486954,+!p3@Hivep3!0.78!9.29!Hivep3;;chr15:61817095..61817111,+!p1@Myc!0.77!322.57!Myc;;chr5:34530293..34530318,-!p2@Mxd4!0.77!30.53!Mxd4;;chr6:14851287..14851342,+!p1@Foxp2!0.77!17.26!Foxp2;;chr1:172797864..172797873,-!p2@Atf6!0.77!14.60!Atf6;;chr8:87643578..87643593,-!p1@Zfp791!0.77!10.62!Zfp791;;chr5:138187583..138187602,+!p6@Tsc22d4!0.76!9.29!Tsc22d4;;chr5:3647720..3647733,-!p3@Gatad1!0.75!9.29!Gatad1;;chr3:30408674..30408716,-!p2@Mecom!0.75!7.96!Mecom;;chr15:81633139..81633152,+!p4@Tef!0.74!7.96!Tef;;chr7:51787434..51787448,-!p1@Spib!0.74!6.64!Spib;;chr2:56976543..56976558,-!p2@Nr4a2!0.73!10.62!Nr4a2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.72!15.93!Zbtb7b;;chr19:5560600..5560617,-!p1@Ovol1!0.72!5.31!Ovol1;;chr5:147760339..147760350,+!p3@Gtf3a!0.71!13.27!Gtf3a;;chr2:146047829..146047847,+!p1@Insm1!0.71!7.96!Insm1;;chr19:23215469..23215494,+!p2@Klf9!0.70!6.64!Klf9;;chr17:14011485..14011507,+!p2@Mllt4!0.70!3.98!Mllt4;;chr2:162769220..162769252,+!p1@L3mbtl1!0.70!3.98!L3mbtl1;;chr9:74709664..74709671,+!p6@Onecut1!0.70!3.98!Onecut1;;chr5:148081722..148081744,+!p2@Pdx1!0.70!3.98!Pdx1;;chr5:144951136..144951139,+!p2@Bhlha15!0.70!3.98!Bhlha15;;chr11:98407370..98407395,-!p3@Ikzf3!0.70!3.98!Ikzf3;;chr11:96684043..96684069,-!p9@Nfe2l1!0.70!3.98!Nfe2l1;;chr7:35904304..35904320,+!p1@Cebpa!0.69!91.59!Cebpa;;chr6:118429255..118429336,-!p1@Zfp9!0.69!71.68!Zfp9;;chr6:134780337..134780355,+!p3@Crebl2!0.69!5.31!Crebl2;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.68!42.48!Zfp706;;chr14:79915425..79915501,+!p1@Elf1!0.68!38.50!Elf1;;chr1:194979315..194979359,+!p1@Irf6!0.68!26.55!Irf6;;chr14:22807107..22807119,-!p2@Zfp503!0.68!18.58!Zfp503;;chr1:194979361..194979373,+!p2@Irf6!0.68!5.31!Irf6;;chr11:60023912..60023930,-!p1@Srebf1!0.67!104.87!Srebf1;;chr1:179372411..179372509,+!p1@Zfp238!0.67!53.10!Zfp238;;chr18:11052642..11052659,+!p1@Gata6!0.67!21.24!Gata6;;chr18:74375772..74375799,+!p2@Cxxc1!0.67!11.95!Cxxc1;;chr8:125897678..125897746,+!p1@Tcf25!0.66!836.29!Tcf25;;chr19:23215673..23215753,+!p1@Klf9!0.66!61.06!Klf9;;chr7:50568466..50568486,-!p2@Zfp715!0.66!10.62!Zfp715;;chr2:18314363..18314465,-!p1@Dnajc1!0.65!100.89!Dnajc1;;chr9:30838206..30838285,+!p2@Zbtb44!0.65!53.10!Zbtb44;;chr8:125897750..125897758,+!p2@Tcf25!0.64!26.55!Tcf25;;chr19:28754622..28754633,-!p4@Glis3!0.64!3.98!Glis3;;chr5:104121391..104121450,+!p3@Aff1!0.63!19.91!Aff1;;chr6:134780234..134780288,+!p1@Crebl2!0.63!11.95!Crebl2;;chr5:125538703..125538715,-!p5@Ncor2!0.63!3.98!Ncor2;;chr5:31262609..31262693,-!p1@Preb!0.62!193.81!Preb;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.62!116.82!Zfp706;;chr5:34530277..34530292,-!p3@Mxd4!0.62!9.29!Mxd4;;chr5:134790276..134790294,-!p7@Gtf2i!0.62!7.96!Gtf2i;;chr9:48644013..48644027,-!p5@Zbtb16!0.62!3.98!Zbtb16;;chr2:38781916..38781974,-!p1@Nr6a1!0.61!10.62!Nr6a1;;chr4:102792072..102792091,+!p5@Mier1!0.61!9.29!Mier1;;chr6:15135639..15135655,+!p9@Foxp2!0.61!3.98!Foxp2;;chr11:98636508..98636524,-!p3@Nr1d1!0.61!3.98!Nr1d1;;chr2:181100194..181100205,+!p5@Zgpat!0.60!6.64!Zgpat;;chr16:95923651..95923701,+!p3@Ets2!0.60!5.31!Ets2;;chr15:80085920..80085941,+!p1@Atf4!0.59!404.87!Atf4;;chr8:79426176..79426275,+!p1@Nr3c2!0.59!17.26!Nr3c2;;chr1:170362335..170362356,-!p4@Pbx1!0.59!15.93!Pbx1;;chr6:29476690..29476724,+!p1@Irf5!0.59!15.93!Irf5;;chrX:98449805..98449834,+!p3@Foxo4!0.59!9.29!Foxo4;;chr4:61869573..61869595,-!p2@Zfp37!0.59!3.98!Zfp37;;chr8:107793688..107793736,+!p1@Hsf4!0.59!3.98!Hsf4;;chr18:74375851..74375891,+!p1@Cxxc1!0.58!135.40!Cxxc1;;chr16:55822241..55822258,-!p1@Nfkbiz!0.58!108.85!Nfkbiz;;chr18:74376000..74376061,+!p3@Cxxc1!0.58!11.95!Cxxc1;;chr6:72185232..72185272,-!p1@Atoh8!0.58!9.29!Atoh8;;chr5:65213356..65213412,+!p6@Klf3!0.58!6.64!Klf3;;chr15:10400285..10400360,-!p1@Dnajc21!0.57!43.81!Dnajc21;;chr10:80600749..80600766,+!p2@Zbtb7a!0.57!17.26!Zbtb7a;;chr11:98636575..98636607,-!p2@Nr1d1!0.57!11.95!Nr1d1;;chrX:92906980..92907024,+!p2@Zc3h12b!0.57!7.96!Zc3h12b;;chr5:24108047..24108106,-!p3@Smarcd3!0.57!5.31!Smarcd3;;chr12:113917014..113917034,+!p1@Zbtb42!0.57!5.31!Zbtb42;;chr6:72849716..72849805,-!p1@Kcmf1!0.56!41.15!Kcmf1;;chr6:15135456..15135520,+!p3@Foxp2!0.56!6.64!Foxp2;;chr6:90415281..90415295,+!p5@Klf15!0.56!2.65!Klf15;;chr7:147234982..147234988,-!p1@Msx3!0.56!2.65!Msx3;;chr6:99216375..99216395,-!p5@Foxp1!0.56!2.65!Foxp1;;chr7:147235047..147235079,-!p2@Msx3!0.56!2.65!Msx3;;chr19:37511111..37511115,+!p2@Hhex!0.56!2.65!Hhex;;chr14:63890691..63890718,-!p8@Gata4!0.56!2.65!Gata4;;chr12:37835248..37835260,+!p4@Meox2!0.56!2.65!Meox2;;chr11:83664334..83664353,+!p2@Hnf1b!0.56!2.65!Hnf1b;;chr11:83665637..83665671,+!p6@Hnf1b!0.56!2.65!Hnf1b;;chr1:179372514..179372525,+!p7@Zfp238!0.56!2.65!Zfp238;;chr2:105509045..105509071,+!p1@Pax6!0.56!2.65!Pax6;;chr2:104966436..104966455,+!p7@Wt1!0.56!2.65!Wt1;;chr1:120524563..120524591,+!p2@Tfcp2l1!0.56!2.65!Tfcp2l1;;chr2:105515793..105515808,+!p3@Pax6!0.56!2.65!Pax6;;chr1:138846117..138846129,-!p8@Nr5a2!0.56!2.65!Nr5a2;;chr2:103143315..103143328,-!p2@Ehf!0.56!2.65!Ehf;;chr4:154010882..154010889,-!p10@Prdm16!0.56!2.65!Prdm16;;chr3:3508024..3508069,+!p2@Hnf4g!0.56!2.65!Hnf4g;;chr11:69579401..69579427,+!p2@Zbtb4!0.55!11.95!Zbtb4;;chr1:172797920..172797931,-!p3@Atf6!0.55!9.29!Atf6;;chr1:170362322..170362333,-!p8@Pbx1!0.55!7.96!Pbx1;;chr15:36937029..36937108,-!p1@Gm10193,p1@Zfp706!0.54!388.94!Zfp706;;chr2:83484738..83484749,+!p5@Zc3h15!0.54!11.95!Zc3h15;;chr16:84835570..84835584,+!p4@Gabpa!0.54!9.29!Gabpa;;chr5:25004566.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chr5:3647838..3648009,-!p1@Gatad1!0.14!71.68!Gatad1;;chr4:34830168..34830213,-!p1@Zfp292!0.14!46.46!Zfp292;;chr19:5637736..5637766,+!p1@Rela!0.14!33.19!Rela;;chr6:90319480..90319651,+!p1@Zxdc!0.14!31.86!Zxdc;;chr7:88138544..88138584,+!p1@Zfp592!0.14!30.53!Zfp592;;chr8:87324243..87324277,-!p1@Nfix!0.14!29.20!Nfix;;chr8:109817363..109817383,+!p2@Nfat5!0.14!25.22!Nfat5;;chr17:87153028..87153049,+!p2@Epas1!0.14!25.22!Epas1;;chr9:72380021..72380078,+!p1@Rfx7!0.14!22.57!Rfx7;;chr1:52176315..52176343,+!p1@Stat1!0.14!17.26!Stat1;;chr2:168780757..168780805,-!p1@LOC100502777,p1@Zfp64!0.14!17.26!Zfp64;;chr5:134790548..134790591,-!p3@Gtf2i!0.14!13.27!Gtf2i;;chr16:98183746..98183801,-!p1@Zfp295!0.14!13.27!Zfp295;;chr17:28369668..28369734,+!p1@Ppard!0.14!10.62!Ppard;;chr3:94758041..94758142,+!p1@Rfx5!0.14!10.62!Rfx5;;chr2:91489908..91489941,-!p1@Zfp408!0.14!9.29!Zfp408;;chr4:133801494..133801519,-!p2@Zfp593!0.14!7.96!Zfp593;;chr19:26679615..26679646,+!p3@Smarca2!0.14!7.96!Smarca2;;chr7:26052688..26052742,+!p1@Cic!0.14!7.96!Cic;;chr16:17530781..17530882,-!p2@Thap7!0.14!6.64!Thap7;;chr18:80909801..80909819,-!p1@Nfatc1!0.14!6.64!Nfatc1;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.14!6.64!Zbtb11;;chr5:134790355..134790369,-!p4@Gtf2i!0.14!5.31!Gtf2i;;chr7:29551464..29551487,-!p2@Nfkbib!0.14!3.98!Nfkbib;;chr7:4866835..4866858,+!p2@Zfp628!0.14!3.98!Zfp628;;chr4:120498270..120498285,-!p3@Nfyc!0.14!3.98!Nfyc;;chr3:14578786..14578807,+!p2@E2f5!0.14!3.98!E2f5;;chr7:87171233..87171255,+!p3@Zfp710!0.14!2.65!Zfp710;;chr5:107125807..107125835,-!p3@Zfp644!0.14!2.65!Zfp644;;chr6:115310872..115310899,+!p2@Pparg!0.14!1.33!Pparg;;chr9:72380594..72380635,+!p3@Rfx7!0.14!1.33!Rfx7;;chr4:133309830..133309841,-!p10@Arid1a!0.14!1.33!Arid1a;;chr17:46520747..46520771,+!p3@Zfp318!0.14!1.33!Zfp318;;chr18:39648811..39648818,-!p4@Nr3c1!0.14!1.33!Nr3c1;;chr18:69839537..69839544,+!p13@Tcf4!0.14!1.33!Tcf4;;chr18:3337503..3337536,-!p7@Crem!0.14!1.33!Crem;;chr19:55816300..55816332,+!p1@Tcf7l2!0.13!57.08!Tcf7l2;;chr2:33324013..33324092,-!p1@Zbtb43!0.13!15.93!Zbtb43;;chr18:39650303..39650371,-!p1@Nr3c1!0.13!13.27!Nr3c1;;chr9:56266431..56266488,+!p2@Hmg20a!0.13!11.95!Hmg20a;;chrX:35542957..35543003,+!p1@Zbtb33!0.13!11.95!Zbtb33;;chr2:181100089..181100119,+!p1@Zgpat!0.13!10.62!Zgpat;;chr9:113840108..113840184,+!p2@Ubp1!0.13!10.62!Ubp1;;chr9:32348943..32349001,-!p1@Fli1!0.13!9.29!Fli1;;chr17:88840082..88840127,+!p1@Foxn2!0.13!7.96!Foxn2;;chr17:34730333..34730362,+!p2@Pbx2!0.13!3.98!Pbx2;;chr9:63605978..63605997,-!p2@Smad3!0.13!3.98!Smad3;;chr7:134592623..134592680,-!p1@Zfp689!0.13!3.98!Zfp689;;chr12:77470507..77470572,-!p2@Zbtb25!0.13!3.98!Zbtb25;;chr18:11052485..11052508,+!p2@Gata6!0.13!2.65!Gata6;;chr19:28086084..28086124,-!p6@Rfx3!0.13!2.65!Rfx3;;chr2:27532734..27532749,+!p2@Rxra!0.13!2.65!Rxra;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.13!2.65!Tfcp2l1;;chr4:148178559..148178603,+!p1@Casz1!0.13!2.65!Casz1;;chr2:91864300..91864379,-!p2@Creb3l1!0.13!2.65!Creb3l1;;chr4:149943593..149943605,+!p5@Rere!0.13!1.33!Rere;;chr3:30993616..30993634,+!p3@Skil!0.13!1.33!Skil;;chr13:58501849..58501853,-!p5@Hnrnpk!0.13!1.33!Hnrnpk;;chr13:31898637..31898653,+!p2@Foxc1!0.13!1.33!Foxc1;;chr15:102076652..102076679,-!p4@Rarg!0.13!1.33!Rarg;;chr9:122775033..122775044,-!p2@Zfp445!0.13!1.33!Zfp445;;chr11:106993257..106993268,-!p4@Bptf!0.13!1.33!Bptf;;chr10:44178521..44178557,-!p1@Prdm1!0.13!1.33!Prdm1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.13!1.33!Zbtb7c;;chr17:25151251..25151279,-!p4@Cramp1l!0.13!1.33!Cramp1l;;chr15:102301149..102301221,+!p2@Pcbp2!0.12!43.81!Pcbp2;;chr18:24113169..24113205,+!p1@Zfp397!0.12!30.53!Zfp397;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.12!23.89!Atf2;;chr12:100801772..100801861,-!p1@Foxn3!0.12!23.89!Foxn3;;chr16:50432467..50432522,-!p1@Bbx!0.12!22.57!Bbx;;chr7:134565516..134565573,-!p1@Zfp688!0.12!13.27!Zfp688;;chr16:17531112..17531164,-!p1@Thap7!0.12!11.95!Thap7;;chr13:42147384..42147441,+!p1@Hivep1!0.12!10.62!Hivep1;;
@@ Line 40: / Line 43: @@
 |is_a=EFO:0002091;;FF:0011315
 |is_obsolete=
+|library_id=CNhs10486
+|library_id_phase_based=2:CNhs10486
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;34
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;34
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520adult.CNhs10486.34-16E4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520adult.CNhs10486.34-16E4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520adult.CNhs10486.34-16E4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520adult.CNhs10486.34-16E4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520adult.CNhs10486.34-16E4.mm9.nobarcode.rdna.fa.gz
 |name=pancreas, adult
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10486,LSID647,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.2490850217161,0,0,0,0,0,-0.113066502163686,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0.36688061805648,0,0,1.62480780908097,0,0,0,0,0,0,-0.191542174267551,0,0,0,0,0,-0.209322725495826,-0.0661618130246221,-0.1697242252752,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,0,0,0,0,-0.0190021116689399,0.252225170355522,0.208789575285397,-0.0365927089968535,0,0,-0.0113327382939119,0.144961180883092,0,0,-0.0333690064416059,0.17576753773929,0.9379370228663,-0.0788315948399074,0,0,0,0,0,0,0.546659256027182,0.557020521138227,0.293072825463509,0,0,0,0,0
 |rna_box=16
 |rna_catalog_number=
@@ Line 57: / Line 72: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=16E4
+|rna_tube_id=1.60E+05
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 96: @@
 |top_motifs=RBPJ:4.25919516702;RXRA_VDR{dimer}:4.12893177232;ATF6:3.61726463184;MYOD1:2.49185903256;ARID5B:2.47151932486;bHLH_family:2.40192884841;PDX1:2.32512006577;NR1H4:2.25770758508;STAT5{A,B}:2.04368114181;SNAI1..3:2.0212193343;ZEB1:1.95438069817;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.70281369139;LMO2:1.55742102128;EN1,2:1.55714526855;TLX2:1.50485484499;FOXO1,3,4:1.40372685608;MAFB:1.31240611134;CDX1,2,4:1.28242163745;GCM1,2:1.20912169238;NR5A1,2:1.16399698299;FOXM1:1.12771598044;SPZ1:1.12188456626;STAT1,3:1.11361839106;CEBPA,B_DDIT3:1.08820414305;FOXA2:1.05518801179;AR:1.05068397574;ALX4:0.938221404891;ESR1:0.917541145621;YY1:0.871422345597;HOX{A4,D4}:0.821110282742;FOX{D1,D2}:0.79051726605;FOXN1:0.766184257787;PBX1:0.75498581656;NANOG{mouse}:0.753871097324;GATA6:0.734722198695;NKX3-2:0.678802617319;PAX1,9:0.668990834681;TEF:0.630535905584;NR6A1:0.620243562127;HLF:0.58015940856;HOX{A5,B5}:0.576134598259;PAX6:0.534411035968;MYBL2:0.528951554123;HNF1A:0.481810498446;BPTF:0.478356562426;TOPORS:0.469630870725;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.443606822019;ESRRA:0.411034781168;PAX8:0.362408022594;ZNF148:0.347477970016;HAND1,2:0.336559429634;GTF2A1,2:0.325854265993;FOXQ1:0.290471228325;NFE2:0.280018933706;GZF1:0.278856885248;STAT2,4,6:0.259112115177;CREB1:0.235408524814;HBP1_HMGB_SSRP1_UBTF:0.226234888491;TFAP4:0.21131985125;NHLH1,2:0.200723650774;ONECUT1,2:0.198392998668;ZNF238:0.193526123935;DMAP1_NCOR{1,2}_SMARC:0.161272885454;T:0.154963313665;TFAP2B:0.143303416761;TGIF1:0.121441175388;ETS1,2:0.119533514875;SMAD1..7,9:0.116046668487;NFKB1_REL_RELA:0.105514506458;PPARG:0.103840538651;HSF1,2:0.0888758294466;ELF1,2,4:0.0731084725909;NANOG:0.0580326780748;NKX2-2,8:0.0539603233994;DBP:0.0460023723557;ZBTB6:0.0452119278309;TAL1_TCF{3,4,12}:0.0415537901051;ATF4:0.0297258217203;HOXA9_MEIS1:0.0248848767968;NFIX:0.0136228901423;TBP:0.0134712390014;HMGA1,2:0.0027689064673;HMX1:-0.0151477618878;SPIB:-0.0459380481551;POU6F1:-0.054477344548;ADNP_IRX_SIX_ZHX:-0.0612069819981;BACH2:-0.0770463727389;NFE2L2:-0.0816263305489;RUNX1..3:-0.0930216135485;ATF5_CREB3:-0.0941962133511;POU1F1:-0.109067184017;CRX:-0.128935568145;LEF1_TCF7_TCF7L1,2:-0.131715103619;HIC1:-0.155964022899;IRF1,2:-0.177015852015;MTF1:-0.185659168548;FOX{F1,F2,J1}:-0.185989472194;MYFfamily:-0.20447924082;UFEwm:-0.211187398276;AIRE:-0.212642968085;POU2F1..3:-0.24345131748;RORA:-0.251284480479;TEAD1:-0.25444873707;TP53:-0.26234734961;HNF4A_NR2F1,2:-0.277586782657;MTE{core}:-0.279575025644;ALX1:-0.280918582937;SOX5:-0.289328462405;AHR_ARNT_ARNT2:-0.301317980486;ZIC1..3:-0.307034523137;ZBTB16:-0.332130220556;RFX2..5_RFXANK_RFXAP:-0.370451708014;TLX1..3_NFIC{dimer}:-0.37374732653;NFATC1..3:-0.375267017706;MED-1{core}:-0.390619720192;RFX1:-0.394132665485;LHX3,4:-0.407602546092;SOX17:-0.418240623851;ELK1,4_GABP{A,B1}:-0.426512913215;GTF2I:-0.437118130047;PATZ1:-0.443527891595;RXR{A,B,G}:-0.46291845712;PAX5:-0.475868597909;XCPE1{core}:-0.478210459653;ZFP161:-0.481458378853;REST:-0.488973865461;NFIL3:-0.490070806318;FOXD3:-0.496324676941;SPI1:-0.522331662512;ZNF143:-0.532794655982;FOS_FOS{B,L1}_JUN{B,D}:-0.540177802488;HES1:-0.557944339676;IKZF1:-0.558517723792;SREBF1,2:-0.599161345933;FOXP1:-0.601034094071;SP1:-0.604431223463;ZNF423:-0.609270823898;MEF2{A,B,C,D}:-0.637561012571;VSX1,2:-0.642168064263;TFAP2{A,C}:-0.642404393966;PRDM1:-0.663630378502;MYB:-0.682766363424;BREu{core}:-0.712769118087;ATF2:-0.729279306104;NRF1:-0.742111966862;FOX{I1,J2}:-0.742380656802;NKX3-1:-0.74619839008;PITX1..3:-0.75963384562;IRF7:-0.781676769376;CUX2:-0.787393971342;NKX6-1,2:-0.815790834995;SOX2:-0.850625283861;PRRX1,2:-0.913999614046;MAZ:-0.942645704455;EGR1..3:-0.949036459151;PAX4:-0.964964987721;OCT4_SOX2{dimer}:-0.99255601801;FOSL2:-0.992753295457;NFE2L1:-0.996382513181;POU5F1:-0.999707386219;MZF1:-1.00374956751;JUN:-1.00646198705;PAX2:-1.03420718086;GATA4:-1.07367597396;RREB1:-1.07641285917;GLI1..3:-1.10061896648;KLF4:-1.11505226318;HIF1A:-1.14679371483;TFCP2:-1.1468508639;SRF:-1.18835480946;EP300:-1.19873322026;CDC5L:-1.23087931156;NKX2-1,4:-1.25837049611;ZNF384:-1.31059420254;EBF1:-1.3116543191;EVI1:-1.31210531441;POU3F1..4:-1.34602622424;NR3C1:-1.39671269514;E2F1..5:-1.44561304556;IKZF2:-1.45640909537;GFI1B:-1.4947033209;SOX{8,9,10}:-1.50203018941;TFDP1:-1.52089892263;NFY{A,B,C}:-1.59753967312;NKX2-3_NKX2-5:-1.62634094296;TBX4,5:-1.72176166766;FOXP3:-2.01619852063;GFI1:-2.12074890767;FOXL1:-2.15305424285
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:34-16E4;search_select_hide=table117:34-16E4
 }}

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FF:34-16E4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:10, 4 June 2020

CNhs10486

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0