FF:720-20F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005632 | ||
|accession_numbers=CAGE;DRX008999;DRR009873;DRZ001298;DRZ002681;DRZ012648;DRZ014031 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000313,FF:0011411 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr10:88969376..88969395,-!p1@Nr1h4!2.25!176.47!Nr1h4;;chr10:80555320..80555378,-!p1@Creb3l3!2.20!183.04!Creb3l3;;chr3:3634145..3634161,+!p1@Hnf4g!2.11!127.33!Hnf4g;;chr5:148118639..148118715,-!p1@Cdx2!2.08!119.77!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!1.91!81.17!Nr1i2;;chr2:163372884..163372904,+!p1@Hnf4a!1.80!62.47!Hnf4a;;chr1:137155026..137155042,-!p1@Elf3!1.67!256.45!Elf3;;chr2:164228702..164228719,+!p1@Rbpjl!1.64!42.58!Rbpjl;;chr10:22539932..22539956,-!p1@Tcf21!1.54!87.94!Tcf21;;chr14:63864056..63864102,-!p1@Gata4!1.45!46.16!Gata4;;chr10:80555398..80555409,-!p2@Creb3l3!1.42!25.27!Creb3l3;;chr2:163332558..163332596,+!p2@Hnf4a!1.42!25.27!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.41!24.47!Isx;;chr2:173044380..173044432,-!p1@Zbp1!1.38!54.12!Zbp1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.38!22.88!Nkx2-3;;chr3:3508024..3508069,+!p2@Hnf4g!1.36!21.69!Hnf4g;;chr7:148452314..148452329,-!p1@Irf7!1.32!135.29!Irf7;;chr8:123608252..123608268,+!p1@Foxf1a!1.32!29.45!Foxf1a;;chr8:77397095..77397127,+!p2@Isx!1.32!19.70!Isx;;chr1:173144144..173144176,+!p1@Nr1i3!1.32!19.70!Nr1i3;;chr9:59796270..59796294,-!p4@Nr2e3!1.31!19.50!Nr2e3;;chr18:61195843..61195864,-!p2@Cdx1!1.31!19.50!Cdx1;;chr2:180069370..180069409,-!p1@Gata5!1.30!22.28!Gata5;;chr2:103123925..103123959,-!p3@Ehf!1.29!18.30!Ehf;;chr17:27865882..27865901,-!p1@Spdef!1.27!17.71!Spdef;;chr18:61195865..61195880,-!p1@Cdx1!1.23!16.12!Cdx1;;chr3:94176733..94176794,+!p1@Rorc!1.22!117.78!Rorc;;chr1:173144100..173144138,+!p2@Nr1i3!1.21!15.12!Nr1i3;;chr4:133109285..133109308,+!p1@Nr0b2!1.19!14.52!Nr0b2;;chr5:115421065..115421088,-!p1@Hnf1a!1.19!14.52!Hnf1a;;chr14:99697871..99697934,+!p1@Klf5!1.17!266.60!Klf5;;chr11:57645506..57645523,-!p1@Hand1!1.17!13.93!Hand1;;chr5:148118792..148118806,-!p3@Cdx2!1.16!13.53!Cdx2;;chr5:148118840..148118857,-!p2@Cdx2!1.16!13.33!Cdx2;;chr2:103143336..103143367,-!p1@Ehf!1.15!21.09!Ehf;;chr3:30039329..30039355,-!p5@Mecom!1.14!12.73!Mecom;;chr8:77397492..77397514,+!p3@Isx!1.14!12.73!Isx;;chr13:31717548..31717596,+!p1@Foxf2!1.13!24.67!Foxf2;;chr9:59797503..59797513,-!p3@Nr2e3!1.13!12.53!Nr2e3;;chr9:59796330..59796350,-!p6@Nr2e3!1.13!12.34!Nr2e3;;chr10:44178521..44178557,-!p1@Prdm1!1.12!21.49!Prdm1;;chr18:64499674..64499696,+!p1@Onecut2!1.12!20.89!Onecut2;;chr10:88996336..88996380,-!p2@Nr1h4!1.12!15.12!Nr1h4;;chr6:64679112..64679126,+!p1@Atoh1!1.12!12.14!Atoh1;;chr8:59799772..59799789,+!p1@Hand2!1.10!33.42!Hand2;;chr6:86619104..86619119,-!p1@Mxd1!1.09!91.52!Mxd1;;chr18:64499706..64499721,+!p2@Onecut2!1.08!15.72!Onecut2;;chr1:165219345..165219366,-!p7@Prrx1!1.08!11.14!Prrx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.07!43.17!Mlxipl;;chr9:59797525..59797538,-!p2@Nr2e3!1.04!9.95!Nr2e3;;chr1:194982959..194983007,+!p5@Irf6!1.04!9.95!Irf6;;chr7:19608891..19608895,-!p1@Foxa3!1.03!12.73!Foxa3;;chr9:59797133..59797145,-!p7@Nr2e3!1.03!9.75!Nr2e3;;chr8:77396650..77396662,+!p4@Isx!1.03!9.75!Isx;;chr13:55932591..55932622,-!p1@Pitx1!1.02!11.34!Pitx1;;chr10:44178375..44178390,-!p2@Prdm1!0.99!12.14!Prdm1;;chr11:98614335..98614349,+!p8@Thra!0.99!8.75!Thra;;chr2:163372869..163372882,+!p3@Hnf4a!0.99!8.75!Hnf4a;;chr3:90046995..90047031,-!p2@Creb3l4!0.98!10.74!Creb3l4;;chr13:31650026..31650045,+!p2@Foxq1!0.97!14.32!Foxq1;;chr10:44178474..44178487,-!p4@Prdm1!0.97!12.14!Prdm1;;chr3:3508005..3508021,+!p3@Hnf4g!0.97!8.36!Hnf4g;;chr6:16848443..16848459,-!p3@Tfec!0.97!8.36!Tfec;;chr18:11052485..11052508,+!p2@Gata6!0.96!23.48!Gata6;;chr7:17642177..17642223,-!p3@Hif3a!0.96!8.16!Hif3a;;chr13:31650185..31650201,+!p1@Foxq1!0.95!28.45!Foxq1;;chr14:63890519..63890539,-!p3@Gata4!0.95!7.96!Gata4;;chr6:52190467..52190500,-!p1@Hoxa10!0.94!7.76!Hoxa10;;chr8:77397190..77397202,+!p5@Isx!0.94!7.76!Isx;;chr5:67490284..67490302,-!p1@Phox2b!0.92!7.36!Phox2b;;chr2:160192793..160192809,-!p1@Mafb!0.91!112.01!Mafb;;chr18:11052642..11052659,+!p1@Gata6!0.91!37.60!Gata6;;chr19:53384910..53384937,+!p3@Mxi1!0.91!20.69!Mxi1;;chr10:44178493..44178520,-!p3@Prdm1!0.91!10.15!Prdm1;;chr14:63890545..63890560,-!p5@Gata4!0.91!7.16!Gata4;;chr1:194979315..194979359,+!p1@Irf6!0.90!44.17!Irf6;;chr2:77357622..77357704,-!p1@Zfp385b!0.90!19.50!Zfp385b;;chr9:59797088..59797101,-!p9@Nr2e3!0.90!6.96!Nr2e3;;chr2:173044357..173044377,-!p2@Zbp1!0.88!9.55!Zbp1;;chr2:180069640..180069660,-!p4@Gata5!0.88!6.57!Gata5;;chr6:83020355..83020371,-!p1@Tlx2!0.88!6.57!Tlx2;;chr5:148118614..148118625,-!p4@Cdx2!0.86!6.17!Cdx2;;chr11:83664365..83664383,+!p1@Hnf1b!0.86!6.17!Hnf1b;;chr12:39510206..39510249,+!p3@Etv1!0.84!5.97!Etv1;;chr2:153067079..153067090,-!p2@Plagl2!0.83!12.73!Plagl2;;chr2:180069410..180069421,-!p3@Gata5!0.83!5.77!Gata5;;chr2:19367259..19367278,+!p1@Ptf1a!0.82!5.57!Ptf1a;;chr11:83664334..83664353,+!p2@Hnf1b!0.82!5.57!Hnf1b;;chr14:63890491..63890516,-!p2@Gata4!0.79!5.17!Gata4;;chr8:118231678..118231692,-!p2@Maf!0.78!50.14!Maf;;chr8:123260252..123260264,+!p1@Irf8!0.78!38.20!Irf8;;chr15:97738692..97738747,-!p1@Vdr!0.78!29.84!Vdr;;chr11:53583544..53583559,+!p1@Irf1!0.77!89.53!Irf1;;chr5:120121446.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!p15@Ncoa7!0.15!0.40!Ncoa7;;chr11:96143962..96144035,+!p2@Hoxb8!0.15!0.40!Hoxb8;;chr11:62272200..62272221,-!p11@Ncor1!0.15!0.40!Ncor1;;chr2:74536026..74536039,+!p1@Hoxd9!0.15!0.40!Hoxd9;;chr3:94181331..94181345,+!p4@Rorc!0.15!0.40!Rorc;;chr2:74517609..74517621,+!p3@Hoxd11!0.15!0.40!Hoxd11;;chr4:84321317..84321332,-!p4@Bnc2!0.15!0.40!Bnc2;;chr3:29912310..29912321,-!p23@Mecom!0.15!0.40!Mecom;;chr4:84321280..84321298,-!p5@Bnc2!0.15!0.40!Bnc2;;chr3:89191234..89191245,-!p15@Zbtb7b!0.15!0.40!Zbtb7b;;chr14:63864337..63864381,-!p6@Gata4!0.15!0.40!Gata4;;chr13:31717775..31717788,+!p4@Foxf2!0.15!0.40!Foxf2;;chr13:29045308..29045318,-!p10@Sox4!0.15!0.40!Sox4;;chr12:87027663..87027678,+!p2@Batf!0.15!0.40!Batf;;chr12:37835248..37835260,+!p4@Meox2!0.15!0.40!Meox2;;chr14:76887566..76887579,+!p18@Tsc22d1!0.15!0.40!Tsc22d1;;chr13:31717662..31717669,+!p6@Foxf2!0.15!0.40!Foxf2;;chr15:25914088..25914091,+!p6@Zfp622!0.15!0.40!Zfp622;;chr13:112476407..112476418,+!p6@Mier3!0.15!0.40!Mier3;;chr16:55819071..55819073,-!p11@Nfkbiz!0.15!0.40!Nfkbiz;;chr15:85565338..85565355,+!p7@Ppara!0.15!0.40!Ppara;;chr19:12871064..12871095,-!p2@Zfp91!0.15!0.40!Zfp91;;chr17:71201050..71201078,-!p9@Tgif1!0.15!0.40!Tgif1;;chr16:18588291..18588301,-!p2@Tbx1!0.15!0.40!Tbx1;;chr15:79178559..79178584,+!p8@Maff!0.15!0.40!Maff;;chr14:75684150..75684197,+!p1@Zc3h13!0.14!39.99!Zc3h13;;chr11:60034052..60034134,-!p2@Srebf1!0.14!28.85!Srebf1;;chr12:32635078..32635111,-!p1@Hbp1!0.14!26.06!Hbp1;;chr17:28487692..28487765,-!p1@Tead3!0.14!24.07!Tead3;;chr1:95651138..95651255,-!p1@Thap4!0.14!17.51!Thap4;;chr6:72849716..72849805,-!p1@Kcmf1!0.14!14.92!Kcmf1;;chr18:80904854..80904919,-!p2@Nfatc1!0.14!14.32!Nfatc1;;chr5:108697916..108697943,+!p2@Dr1!0.14!13.93!Dr1;;chr19:5637708..5637730,+!p3@Rela!0.14!11.74!Rela;;chr7:28645585..28645659,+!p1@Zfp607!0.14!11.34!Zfp607;;chr15:99532568..99532636,+!p2@Smarcd1!0.14!10.54!Smarcd1;;chr2:169458192..169458247,+!p1@Tshz2!0.14!10.35!Tshz2;;chr10:119913310..119913366,-!p1@Hmga2!0.14!9.15!Hmga2;;chr5:145992626..145992652,+!p2@Zfp655!0.14!7.96!Zfp655;;chr2:152223469..152223512,-!p1@Sox12!0.14!5.77!Sox12;;chr18:83084030..83084056,+!p1@Zfp516!0.14!5.57!Zfp516;;chr10:41996550..41996569,-!p2@Foxo3!0.14!4.97!Foxo3;;chr19:28085485..28085544,-!p5@Rfx3!0.14!4.18!Rfx3;;chr2:115891409..115891425,-!p2@Meis2!0.14!2.79!Meis2;;chr4:148178559..148178603,+!p1@Casz1!0.14!2.79!Casz1;;chr8:72520225..72520248,-!p9@Gatad2a!0.14!2.59!Gatad2a;;chr5:65194709..65194716,+!p10@Klf3!0.14!1.59!Klf3;;chr13:99954688..99954710,+!p2@Zfp366!0.14!1.59!Zfp366;;chr17:25151251..25151279,-!p4@Cramp1l!0.14!1.39!Cramp1l;;chr10:67599375..67599386,-!p3@Arid5b!0.14!1.39!Arid5b;;chr3:30993616..30993634,+!p3@Skil!0.14!1.39!Skil;;chr3:51081392..51081407,-!p8@Elf2!0.14!1.19!Elf2;;chr17:71200415..71200427,-!p5@Tgif1!0.14!1.19!Tgif1;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.14!1.19!Hmga1;;chr5:147760331..147760336,+!p5@Gtf3a!0.14!1.19!Gtf3a;;chr6:72185179..72185196,-!p4@Atoh8!0.14!0.80!Atoh8;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.14!0.80!Zfhx3;;chr10:126723307..126723319,-!p6@Mbd6!0.14!0.80!Mbd6;;chr19:23216166..23216191,+!p6@Klf9!0.14!0.80!Klf9;;chr1:120950269..120950287,-!p6@Gli2!0.14!0.80!Gli2;;chr13:44936126..44936164,+!p6@Jarid2!0.14!0.60!Jarid2;;chr6:15135439..15135452,+!p13@Foxp2!0.14!0.60!Foxp2;;chr16:43510301..43510313,+!p24@Zbtb20!0.14!0.60!Zbtb20;;chr17:48015839..48015915,-!p3@Foxp4!0.14!0.60!Foxp4;;chr11:106128936..106128955,-!p4@Smarcd2!0.14!0.60!Smarcd2;;chr18:73863393..73863460,-!p1@Smad4!0.13!109.23!Smad4;;chr11:62270791..62270834,-!p1@Ncor1!0.13!60.88!Ncor1;;chr16:11176363..11176458,-!p1@Zc3h7a!0.13!59.49!Zc3h7a;; | |expression_enrichment_score=chr10:88969376..88969395,-!p1@Nr1h4!2.25!176.47!Nr1h4;;chr10:80555320..80555378,-!p1@Creb3l3!2.20!183.04!Creb3l3;;chr3:3634145..3634161,+!p1@Hnf4g!2.11!127.33!Hnf4g;;chr5:148118639..148118715,-!p1@Cdx2!2.08!119.77!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!1.91!81.17!Nr1i2;;chr2:163372884..163372904,+!p1@Hnf4a!1.80!62.47!Hnf4a;;chr1:137155026..137155042,-!p1@Elf3!1.67!256.45!Elf3;;chr2:164228702..164228719,+!p1@Rbpjl!1.64!42.58!Rbpjl;;chr10:22539932..22539956,-!p1@Tcf21!1.54!87.94!Tcf21;;chr14:63864056..63864102,-!p1@Gata4!1.45!46.16!Gata4;;chr10:80555398..80555409,-!p2@Creb3l3!1.42!25.27!Creb3l3;;chr2:163332558..163332596,+!p2@Hnf4a!1.42!25.27!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.41!24.47!Isx;;chr2:173044380..173044432,-!p1@Zbp1!1.38!54.12!Zbp1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.38!22.88!Nkx2-3;;chr3:3508024..3508069,+!p2@Hnf4g!1.36!21.69!Hnf4g;;chr7:148452314..148452329,-!p1@Irf7!1.32!135.29!Irf7;;chr8:123608252..123608268,+!p1@Foxf1a!1.32!29.45!Foxf1a;;chr8:77397095..77397127,+!p2@Isx!1.32!19.70!Isx;;chr1:173144144..173144176,+!p1@Nr1i3!1.32!19.70!Nr1i3;;chr9:59796270..59796294,-!p4@Nr2e3!1.31!19.50!Nr2e3;;chr18:61195843..61195864,-!p2@Cdx1!1.31!19.50!Cdx1;;chr2:180069370..180069409,-!p1@Gata5!1.30!22.28!Gata5;;chr2:103123925..103123959,-!p3@Ehf!1.29!18.30!Ehf;;chr17:27865882..27865901,-!p1@Spdef!1.27!17.71!Spdef;;chr18:61195865..61195880,-!p1@Cdx1!1.23!16.12!Cdx1;;chr3:94176733..94176794,+!p1@Rorc!1.22!117.78!Rorc;;chr1:173144100..173144138,+!p2@Nr1i3!1.21!15.12!Nr1i3;;chr4:133109285..133109308,+!p1@Nr0b2!1.19!14.52!Nr0b2;;chr5:115421065..115421088,-!p1@Hnf1a!1.19!14.52!Hnf1a;;chr14:99697871..99697934,+!p1@Klf5!1.17!266.60!Klf5;;chr11:57645506..57645523,-!p1@Hand1!1.17!13.93!Hand1;;chr5:148118792..148118806,-!p3@Cdx2!1.16!13.53!Cdx2;;chr5:148118840..148118857,-!p2@Cdx2!1.16!13.33!Cdx2;;chr2:103143336..103143367,-!p1@Ehf!1.15!21.09!Ehf;;chr3:30039329..30039355,-!p5@Mecom!1.14!12.73!Mecom;;chr8:77397492..77397514,+!p3@Isx!1.14!12.73!Isx;;chr13:31717548..31717596,+!p1@Foxf2!1.13!24.67!Foxf2;;chr9:59797503..59797513,-!p3@Nr2e3!1.13!12.53!Nr2e3;;chr9:59796330..59796350,-!p6@Nr2e3!1.13!12.34!Nr2e3;;chr10:44178521..44178557,-!p1@Prdm1!1.12!21.49!Prdm1;;chr18:64499674..64499696,+!p1@Onecut2!1.12!20.89!Onecut2;;chr10:88996336..88996380,-!p2@Nr1h4!1.12!15.12!Nr1h4;;chr6:64679112..64679126,+!p1@Atoh1!1.12!12.14!Atoh1;;chr8:59799772..59799789,+!p1@Hand2!1.10!33.42!Hand2;;chr6:86619104..86619119,-!p1@Mxd1!1.09!91.52!Mxd1;;chr18:64499706..64499721,+!p2@Onecut2!1.08!15.72!Onecut2;;chr1:165219345..165219366,-!p7@Prrx1!1.08!11.14!Prrx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.07!43.17!Mlxipl;;chr9:59797525..59797538,-!p2@Nr2e3!1.04!9.95!Nr2e3;;chr1:194982959..194983007,+!p5@Irf6!1.04!9.95!Irf6;;chr7:19608891..19608895,-!p1@Foxa3!1.03!12.73!Foxa3;;chr9:59797133..59797145,-!p7@Nr2e3!1.03!9.75!Nr2e3;;chr8:77396650..77396662,+!p4@Isx!1.03!9.75!Isx;;chr13:55932591..55932622,-!p1@Pitx1!1.02!11.34!Pitx1;;chr10:44178375..44178390,-!p2@Prdm1!0.99!12.14!Prdm1;;chr11:98614335..98614349,+!p8@Thra!0.99!8.75!Thra;;chr2:163372869..163372882,+!p3@Hnf4a!0.99!8.75!Hnf4a;;chr3:90046995..90047031,-!p2@Creb3l4!0.98!10.74!Creb3l4;;chr13:31650026..31650045,+!p2@Foxq1!0.97!14.32!Foxq1;;chr10:44178474..44178487,-!p4@Prdm1!0.97!12.14!Prdm1;;chr3:3508005..3508021,+!p3@Hnf4g!0.97!8.36!Hnf4g;;chr6:16848443..16848459,-!p3@Tfec!0.97!8.36!Tfec;;chr18:11052485..11052508,+!p2@Gata6!0.96!23.48!Gata6;;chr7:17642177..17642223,-!p3@Hif3a!0.96!8.16!Hif3a;;chr13:31650185..31650201,+!p1@Foxq1!0.95!28.45!Foxq1;;chr14:63890519..63890539,-!p3@Gata4!0.95!7.96!Gata4;;chr6:52190467..52190500,-!p1@Hoxa10!0.94!7.76!Hoxa10;;chr8:77397190..77397202,+!p5@Isx!0.94!7.76!Isx;;chr5:67490284..67490302,-!p1@Phox2b!0.92!7.36!Phox2b;;chr2:160192793..160192809,-!p1@Mafb!0.91!112.01!Mafb;;chr18:11052642..11052659,+!p1@Gata6!0.91!37.60!Gata6;;chr19:53384910..53384937,+!p3@Mxi1!0.91!20.69!Mxi1;;chr10:44178493..44178520,-!p3@Prdm1!0.91!10.15!Prdm1;;chr14:63890545..63890560,-!p5@Gata4!0.91!7.16!Gata4;;chr1:194979315..194979359,+!p1@Irf6!0.90!44.17!Irf6;;chr2:77357622..77357704,-!p1@Zfp385b!0.90!19.50!Zfp385b;;chr9:59797088..59797101,-!p9@Nr2e3!0.90!6.96!Nr2e3;;chr2:173044357..173044377,-!p2@Zbp1!0.88!9.55!Zbp1;;chr2:180069640..180069660,-!p4@Gata5!0.88!6.57!Gata5;;chr6:83020355..83020371,-!p1@Tlx2!0.88!6.57!Tlx2;;chr5:148118614..148118625,-!p4@Cdx2!0.86!6.17!Cdx2;;chr11:83664365..83664383,+!p1@Hnf1b!0.86!6.17!Hnf1b;;chr12:39510206..39510249,+!p3@Etv1!0.84!5.97!Etv1;;chr2:153067079..153067090,-!p2@Plagl2!0.83!12.73!Plagl2;;chr2:180069410..180069421,-!p3@Gata5!0.83!5.77!Gata5;;chr2:19367259..19367278,+!p1@Ptf1a!0.82!5.57!Ptf1a;;chr11:83664334..83664353,+!p2@Hnf1b!0.82!5.57!Hnf1b;;chr14:63890491..63890516,-!p2@Gata4!0.79!5.17!Gata4;;chr8:118231678..118231692,-!p2@Maf!0.78!50.14!Maf;;chr8:123260252..123260264,+!p1@Irf8!0.78!38.20!Irf8;;chr15:97738692..97738747,-!p1@Vdr!0.78!29.84!Vdr;;chr11:53583544..53583559,+!p1@Irf1!0.77!89.53!Irf1;;chr5:120121446.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!p15@Ncoa7!0.15!0.40!Ncoa7;;chr11:96143962..96144035,+!p2@Hoxb8!0.15!0.40!Hoxb8;;chr11:62272200..62272221,-!p11@Ncor1!0.15!0.40!Ncor1;;chr2:74536026..74536039,+!p1@Hoxd9!0.15!0.40!Hoxd9;;chr3:94181331..94181345,+!p4@Rorc!0.15!0.40!Rorc;;chr2:74517609..74517621,+!p3@Hoxd11!0.15!0.40!Hoxd11;;chr4:84321317..84321332,-!p4@Bnc2!0.15!0.40!Bnc2;;chr3:29912310..29912321,-!p23@Mecom!0.15!0.40!Mecom;;chr4:84321280..84321298,-!p5@Bnc2!0.15!0.40!Bnc2;;chr3:89191234..89191245,-!p15@Zbtb7b!0.15!0.40!Zbtb7b;;chr14:63864337..63864381,-!p6@Gata4!0.15!0.40!Gata4;;chr13:31717775..31717788,+!p4@Foxf2!0.15!0.40!Foxf2;;chr13:29045308..29045318,-!p10@Sox4!0.15!0.40!Sox4;;chr12:87027663..87027678,+!p2@Batf!0.15!0.40!Batf;;chr12:37835248..37835260,+!p4@Meox2!0.15!0.40!Meox2;;chr14:76887566..76887579,+!p18@Tsc22d1!0.15!0.40!Tsc22d1;;chr13:31717662..31717669,+!p6@Foxf2!0.15!0.40!Foxf2;;chr15:25914088..25914091,+!p6@Zfp622!0.15!0.40!Zfp622;;chr13:112476407..112476418,+!p6@Mier3!0.15!0.40!Mier3;;chr16:55819071..55819073,-!p11@Nfkbiz!0.15!0.40!Nfkbiz;;chr15:85565338..85565355,+!p7@Ppara!0.15!0.40!Ppara;;chr19:12871064..12871095,-!p2@Zfp91!0.15!0.40!Zfp91;;chr17:71201050..71201078,-!p9@Tgif1!0.15!0.40!Tgif1;;chr16:18588291..18588301,-!p2@Tbx1!0.15!0.40!Tbx1;;chr15:79178559..79178584,+!p8@Maff!0.15!0.40!Maff;;chr14:75684150..75684197,+!p1@Zc3h13!0.14!39.99!Zc3h13;;chr11:60034052..60034134,-!p2@Srebf1!0.14!28.85!Srebf1;;chr12:32635078..32635111,-!p1@Hbp1!0.14!26.06!Hbp1;;chr17:28487692..28487765,-!p1@Tead3!0.14!24.07!Tead3;;chr1:95651138..95651255,-!p1@Thap4!0.14!17.51!Thap4;;chr6:72849716..72849805,-!p1@Kcmf1!0.14!14.92!Kcmf1;;chr18:80904854..80904919,-!p2@Nfatc1!0.14!14.32!Nfatc1;;chr5:108697916..108697943,+!p2@Dr1!0.14!13.93!Dr1;;chr19:5637708..5637730,+!p3@Rela!0.14!11.74!Rela;;chr7:28645585..28645659,+!p1@Zfp607!0.14!11.34!Zfp607;;chr15:99532568..99532636,+!p2@Smarcd1!0.14!10.54!Smarcd1;;chr2:169458192..169458247,+!p1@Tshz2!0.14!10.35!Tshz2;;chr10:119913310..119913366,-!p1@Hmga2!0.14!9.15!Hmga2;;chr5:145992626..145992652,+!p2@Zfp655!0.14!7.96!Zfp655;;chr2:152223469..152223512,-!p1@Sox12!0.14!5.77!Sox12;;chr18:83084030..83084056,+!p1@Zfp516!0.14!5.57!Zfp516;;chr10:41996550..41996569,-!p2@Foxo3!0.14!4.97!Foxo3;;chr19:28085485..28085544,-!p5@Rfx3!0.14!4.18!Rfx3;;chr2:115891409..115891425,-!p2@Meis2!0.14!2.79!Meis2;;chr4:148178559..148178603,+!p1@Casz1!0.14!2.79!Casz1;;chr8:72520225..72520248,-!p9@Gatad2a!0.14!2.59!Gatad2a;;chr5:65194709..65194716,+!p10@Klf3!0.14!1.59!Klf3;;chr13:99954688..99954710,+!p2@Zfp366!0.14!1.59!Zfp366;;chr17:25151251..25151279,-!p4@Cramp1l!0.14!1.39!Cramp1l;;chr10:67599375..67599386,-!p3@Arid5b!0.14!1.39!Arid5b;;chr3:30993616..30993634,+!p3@Skil!0.14!1.39!Skil;;chr3:51081392..51081407,-!p8@Elf2!0.14!1.19!Elf2;;chr17:71200415..71200427,-!p5@Tgif1!0.14!1.19!Tgif1;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.14!1.19!Hmga1;;chr5:147760331..147760336,+!p5@Gtf3a!0.14!1.19!Gtf3a;;chr6:72185179..72185196,-!p4@Atoh8!0.14!0.80!Atoh8;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.14!0.80!Zfhx3;;chr10:126723307..126723319,-!p6@Mbd6!0.14!0.80!Mbd6;;chr19:23216166..23216191,+!p6@Klf9!0.14!0.80!Klf9;;chr1:120950269..120950287,-!p6@Gli2!0.14!0.80!Gli2;;chr13:44936126..44936164,+!p6@Jarid2!0.14!0.60!Jarid2;;chr6:15135439..15135452,+!p13@Foxp2!0.14!0.60!Foxp2;;chr16:43510301..43510313,+!p24@Zbtb20!0.14!0.60!Zbtb20;;chr17:48015839..48015915,-!p3@Foxp4!0.14!0.60!Foxp4;;chr11:106128936..106128955,-!p4@Smarcd2!0.14!0.60!Smarcd2;;chr18:73863393..73863460,-!p1@Smad4!0.13!109.23!Smad4;;chr11:62270791..62270834,-!p1@Ncor1!0.13!60.88!Ncor1;;chr16:11176363..11176458,-!p1@Zc3h7a!0.13!59.49!Zc3h7a;; | ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:720-20F2 | |id=FF:720-20F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011411 | ||
|is_obsolete= | |||
|library_id=CNhs11095 | |||
|library_id_phase_based=2:CNhs11095 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;720 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;720 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.nobarcode.rdna.fa.gz | |||
|name=intestine, neonate N07 | |name=intestine, neonate N07 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11095,LSID733,release008,COMPLETED | |profile_hcage=CNhs11095,LSID733,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.332330744837152,0,0,0,0.0788034163803455,0.0394017081901728,0.051001074680885,0,0.00460330363639126,0,0,-0.005535824016196,0,0,0,0,0,0,-0.0464132245958766,0,0,0,0,0,0,0.0788034163803455,0,0,0,0,0,0,0.203125836855006,0,0,0,0.641698143179456,0,0.086266774431346,0,0.00316594440012108,0.212317941622344,0.260007802338807,0,0,0,0,0,0,0,0,0,0,0.0788034163803455,0,0.233889971548167,0,0,0,0,0.0615647025966481,0,0,0.0788034163803455,0,0.0132583813330485,-0.0205379554951175,0.0682367399403389,0.141804476340525,0.0230371397028754,0,0,0.00584511464017026,0,0.145480126286698,0,0,0.039496097760217,-0.0923255728767087,-0.0788315948399074,0,0,0,0,0,0,0.0173893447420794,0.213230112931784,0.159834758425959,0,0,0,0,0 | |||
|rna_box=20 | |rna_box=20 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 96: | ||
|sample_tissue=intestine | |sample_tissue=intestine | ||
|top_motifs=HNF4A_NR2F1,2:2.45514854875;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.97994820293;DMAP1_NCOR{1,2}_SMARC:1.81927714898;FOXM1:1.78583245527;SNAI1..3:1.73947631325;HNF1A:1.70612514525;ZNF423:1.39026690125;NR6A1:1.36124561698;IRF1,2:1.32511168155;RXRA_VDR{dimer}:1.18411542682;MYBL2:1.1628786595;TLX1..3_NFIC{dimer}:1.14213604319;ESRRA:1.12326032832;XCPE1{core}:1.11586159163;ZEB1:1.11094190175;CDX1,2,4:1.07404486214;PDX1:0.989221382725;ZNF148:0.97415778265;SREBF1,2:0.963324517506;GZF1:0.954749618461;NFIX:0.938576807972;FOXA2:0.90746176251;ATF6:0.90574672863;TOPORS:0.857033184372;TBX4,5:0.852101472966;T:0.817706292342;FOSL2:0.807574215123;SP1:0.79147939431;SRF:0.765425362263;TFAP4:0.738452030861;FOX{D1,D2}:0.719184199011;IRF7:0.706756160082;TBP:0.697214482835;MYOD1:0.673236969924;STAT2,4,6:0.629398665601;TP53:0.583788811988;AR:0.566337662095;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.548115354881;FOX{I1,J2}:0.477206009826;NR1H4:0.432586232181;GATA6:0.41633458347;TAL1_TCF{3,4,12}:0.407331714088;TLX2:0.389576510392;ESR1:0.380561774249;MAZ:0.377857845663;ARID5B:0.371091794957;FOS_FOS{B,L1}_JUN{B,D}:0.356883301434;MYFfamily:0.342728853164;ADNP_IRX_SIX_ZHX:0.323902233314;NKX3-2:0.306452307663;EBF1:0.305155006692;LEF1_TCF7_TCF7L1,2:0.262342944641;HAND1,2:0.258227515234;ETS1,2:0.246109071342;TFCP2:0.242809993598;LMO2:0.218684117915;TEAD1:0.211983378057;EVI1:0.184890156828;HIF1A:0.172587240116;GFI1:0.169223099744;bHLH_family:0.156154134646;CEBPA,B_DDIT3:0.130100985512;GTF2I:0.122740980565;NANOG:0.0967102815072;ELF1,2,4:0.0960266787516;RBPJ:0.0748831421181;NKX2-1,4:0.0734614190473;FOXD3:0.0620043323441;STAT1,3:0.049576115057;GTF2A1,2:0.0490718105832;FOXN1:0.031977012728;CDC5L:0.0201271434962;ZNF238:0.0018995324616;IKZF2:0.00170767417554;SPI1:-0.0212582391255;POU6F1:-0.0259622343581;ZBTB6:-0.037990009481;NR5A1,2:-0.0490196818346;PBX1:-0.0571168252249;REST:-0.0615708684031;GLI1..3:-0.0797799868061;FOXP1:-0.0891507360809;TFAP2B:-0.0920237330869;GCM1,2:-0.0931266139272;FOXL1:-0.0966932859181;IKZF1:-0.106374907452;GFI1B:-0.108230130044;TFAP2{A,C}:-0.116358684596;NFKB1_REL_RELA:-0.122765906683;FOX{F1,F2,J1}:-0.14364461373;POU1F1:-0.1451165853;JUN:-0.150450167041;HIC1:-0.158624294316;E2F1..5:-0.173724112116;EN1,2:-0.181529834593;FOXO1,3,4:-0.183572268943;DBP:-0.192410625202;HMX1:-0.202253595118;BACH2:-0.207561572301;HOXA9_MEIS1:-0.226718262847;PATZ1:-0.238595135416;MED-1{core}:-0.249671983507;NKX2-3_NKX2-5:-0.249796219403;YY1:-0.262699764031;ONECUT1,2:-0.284101262414;MTF1:-0.285415427171;SPIB:-0.324092437502;PAX5:-0.356258590246;NKX6-1,2:-0.359369497552;TGIF1:-0.363374999037;ATF2:-0.364852009723;LHX3,4:-0.37196325956;SMAD1..7,9:-0.382529688039;ALX4:-0.383513319658;MTE{core}:-0.387791491713;EP300:-0.3905616848;PAX1,9:-0.393340116447;SPZ1:-0.39788434881;NKX2-2,8:-0.406203368712;EGR1..3:-0.407717448901;POU2F1..3:-0.408092468748;NFE2:-0.409006663781;STAT5{A,B}:-0.415376075395;RUNX1..3:-0.433256034011;RREB1:-0.436956730936;NFIL3:-0.441227180088;NFY{A,B,C}:-0.4485854787;HES1:-0.449308116033;NKX3-1:-0.453986455986;MYB:-0.466790006567;KLF4:-0.469935585996;PRDM1:-0.47797651573;HBP1_HMGB_SSRP1_UBTF:-0.478542052169;PRRX1,2:-0.481584674116;ZNF384:-0.488078939351;ZFP161:-0.492653212474;ATF5_CREB3:-0.496987538369;VSX1,2:-0.504562616485;NHLH1,2:-0.512473838525;OCT4_SOX2{dimer}:-0.51814612009;UFEwm:-0.529242287971;CUX2:-0.535809133804;BPTF:-0.544322495581;PAX2:-0.5475002172;PPARG:-0.55522329867;MAFB:-0.584252892527;NR3C1:-0.591931778299;ELK1,4_GABP{A,B1}:-0.598779852564;PAX6:-0.605690501956;NFE2L2:-0.605791314146;HMGA1,2:-0.620715926383;MZF1:-0.669106252212;BREu{core}:-0.676465508801;FOXQ1:-0.682948026466;RFX1:-0.685852237066;GATA4:-0.705407970897;HLF:-0.7128258369;PITX1..3:-0.719483586053;MEF2{A,B,C,D}:-0.738449654682;TFDP1:-0.753799334558;RORA:-0.758983735697;SOX17:-0.764264838204;SOX2:-0.768350850086;AHR_ARNT_ARNT2:-0.775478534701;TEF:-0.783863612363;NFE2L1:-0.800110246654;SOX5:-0.820870177224;CREB1:-0.837980141461;NFATC1..3:-0.860570824459;HSF1,2:-0.882345766671;SOX{8,9,10}:-0.894304682789;PAX4:-0.896617389297;PAX8:-0.902316535184;POU5F1:-0.912774131409;NANOG{mouse}:-0.94229861119;AIRE:-0.949637490569;ZNF143:-0.95538401068;RFX2..5_RFXANK_RFXAP:-0.956166308814;CRX:-0.962387931459;RXR{A,B,G}:-0.969027553163;ATF4:-0.982532264256;ALX1:-1.04484575854;ZIC1..3:-1.05668016463;ZBTB16:-1.14453176739;NRF1:-1.19234711551;POU3F1..4:-1.23995248237;FOXP3:-1.30698807618;HOX{A4,D4}:-1.86440281029;HOX{A5,B5}:-2.79071435218 | |top_motifs=HNF4A_NR2F1,2:2.45514854875;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.97994820293;DMAP1_NCOR{1,2}_SMARC:1.81927714898;FOXM1:1.78583245527;SNAI1..3:1.73947631325;HNF1A:1.70612514525;ZNF423:1.39026690125;NR6A1:1.36124561698;IRF1,2:1.32511168155;RXRA_VDR{dimer}:1.18411542682;MYBL2:1.1628786595;TLX1..3_NFIC{dimer}:1.14213604319;ESRRA:1.12326032832;XCPE1{core}:1.11586159163;ZEB1:1.11094190175;CDX1,2,4:1.07404486214;PDX1:0.989221382725;ZNF148:0.97415778265;SREBF1,2:0.963324517506;GZF1:0.954749618461;NFIX:0.938576807972;FOXA2:0.90746176251;ATF6:0.90574672863;TOPORS:0.857033184372;TBX4,5:0.852101472966;T:0.817706292342;FOSL2:0.807574215123;SP1:0.79147939431;SRF:0.765425362263;TFAP4:0.738452030861;FOX{D1,D2}:0.719184199011;IRF7:0.706756160082;TBP:0.697214482835;MYOD1:0.673236969924;STAT2,4,6:0.629398665601;TP53:0.583788811988;AR:0.566337662095;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.548115354881;FOX{I1,J2}:0.477206009826;NR1H4:0.432586232181;GATA6:0.41633458347;TAL1_TCF{3,4,12}:0.407331714088;TLX2:0.389576510392;ESR1:0.380561774249;MAZ:0.377857845663;ARID5B:0.371091794957;FOS_FOS{B,L1}_JUN{B,D}:0.356883301434;MYFfamily:0.342728853164;ADNP_IRX_SIX_ZHX:0.323902233314;NKX3-2:0.306452307663;EBF1:0.305155006692;LEF1_TCF7_TCF7L1,2:0.262342944641;HAND1,2:0.258227515234;ETS1,2:0.246109071342;TFCP2:0.242809993598;LMO2:0.218684117915;TEAD1:0.211983378057;EVI1:0.184890156828;HIF1A:0.172587240116;GFI1:0.169223099744;bHLH_family:0.156154134646;CEBPA,B_DDIT3:0.130100985512;GTF2I:0.122740980565;NANOG:0.0967102815072;ELF1,2,4:0.0960266787516;RBPJ:0.0748831421181;NKX2-1,4:0.0734614190473;FOXD3:0.0620043323441;STAT1,3:0.049576115057;GTF2A1,2:0.0490718105832;FOXN1:0.031977012728;CDC5L:0.0201271434962;ZNF238:0.0018995324616;IKZF2:0.00170767417554;SPI1:-0.0212582391255;POU6F1:-0.0259622343581;ZBTB6:-0.037990009481;NR5A1,2:-0.0490196818346;PBX1:-0.0571168252249;REST:-0.0615708684031;GLI1..3:-0.0797799868061;FOXP1:-0.0891507360809;TFAP2B:-0.0920237330869;GCM1,2:-0.0931266139272;FOXL1:-0.0966932859181;IKZF1:-0.106374907452;GFI1B:-0.108230130044;TFAP2{A,C}:-0.116358684596;NFKB1_REL_RELA:-0.122765906683;FOX{F1,F2,J1}:-0.14364461373;POU1F1:-0.1451165853;JUN:-0.150450167041;HIC1:-0.158624294316;E2F1..5:-0.173724112116;EN1,2:-0.181529834593;FOXO1,3,4:-0.183572268943;DBP:-0.192410625202;HMX1:-0.202253595118;BACH2:-0.207561572301;HOXA9_MEIS1:-0.226718262847;PATZ1:-0.238595135416;MED-1{core}:-0.249671983507;NKX2-3_NKX2-5:-0.249796219403;YY1:-0.262699764031;ONECUT1,2:-0.284101262414;MTF1:-0.285415427171;SPIB:-0.324092437502;PAX5:-0.356258590246;NKX6-1,2:-0.359369497552;TGIF1:-0.363374999037;ATF2:-0.364852009723;LHX3,4:-0.37196325956;SMAD1..7,9:-0.382529688039;ALX4:-0.383513319658;MTE{core}:-0.387791491713;EP300:-0.3905616848;PAX1,9:-0.393340116447;SPZ1:-0.39788434881;NKX2-2,8:-0.406203368712;EGR1..3:-0.407717448901;POU2F1..3:-0.408092468748;NFE2:-0.409006663781;STAT5{A,B}:-0.415376075395;RUNX1..3:-0.433256034011;RREB1:-0.436956730936;NFIL3:-0.441227180088;NFY{A,B,C}:-0.4485854787;HES1:-0.449308116033;NKX3-1:-0.453986455986;MYB:-0.466790006567;KLF4:-0.469935585996;PRDM1:-0.47797651573;HBP1_HMGB_SSRP1_UBTF:-0.478542052169;PRRX1,2:-0.481584674116;ZNF384:-0.488078939351;ZFP161:-0.492653212474;ATF5_CREB3:-0.496987538369;VSX1,2:-0.504562616485;NHLH1,2:-0.512473838525;OCT4_SOX2{dimer}:-0.51814612009;UFEwm:-0.529242287971;CUX2:-0.535809133804;BPTF:-0.544322495581;PAX2:-0.5475002172;PPARG:-0.55522329867;MAFB:-0.584252892527;NR3C1:-0.591931778299;ELK1,4_GABP{A,B1}:-0.598779852564;PAX6:-0.605690501956;NFE2L2:-0.605791314146;HMGA1,2:-0.620715926383;MZF1:-0.669106252212;BREu{core}:-0.676465508801;FOXQ1:-0.682948026466;RFX1:-0.685852237066;GATA4:-0.705407970897;HLF:-0.7128258369;PITX1..3:-0.719483586053;MEF2{A,B,C,D}:-0.738449654682;TFDP1:-0.753799334558;RORA:-0.758983735697;SOX17:-0.764264838204;SOX2:-0.768350850086;AHR_ARNT_ARNT2:-0.775478534701;TEF:-0.783863612363;NFE2L1:-0.800110246654;SOX5:-0.820870177224;CREB1:-0.837980141461;NFATC1..3:-0.860570824459;HSF1,2:-0.882345766671;SOX{8,9,10}:-0.894304682789;PAX4:-0.896617389297;PAX8:-0.902316535184;POU5F1:-0.912774131409;NANOG{mouse}:-0.94229861119;AIRE:-0.949637490569;ZNF143:-0.95538401068;RFX2..5_RFXANK_RFXAP:-0.956166308814;CRX:-0.962387931459;RXR{A,B,G}:-0.969027553163;ATF4:-0.982532264256;ALX1:-1.04484575854;ZIC1..3:-1.05668016463;ZBTB16:-1.14453176739;NRF1:-1.19234711551;POU3F1..4:-1.23995248237;FOXP3:-1.30698807618;HOX{A4,D4}:-1.86440281029;HOX{A5,B5}:-2.79071435218 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:720-20F2;search_select_hide=table117:720-20F2 | |||
}} | }} |
Latest revision as of 19:20, 4 June 2020
Name: | intestine, neonate N07 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11095 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11095
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.112 |
1001 | 0.0408 |
1002 | 0.0987 |
1003 | -0.00817 |
1004 | 0 |
1005 | 0.203 |
1006 | -0.00622 |
1007 | -0.0285 |
1008 | 0.203 |
1009 | 0.189 |
101 | -0.0869 |
1010 | 0 |
1011 | 0 |
1012 | 0 |
1013 | 0.197 |
1014 | 0.0788 |
1015 | -0.0848 |
1016 | -0.111 |
1017 | 0 |
1018 | 0.414 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | -0.0487 |
1022 | 0.00841 |
1023 | 0 |
1024 | 0 |
1025 | 0.869 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | 0.226 |
103 | 0.145 |
1030 | 0 |
1031 | 0.0889 |
1032 | 0.36 |
1033 | -0.017 |
1034 | 0 |
1035 | 0 |
1036 | -0.118 |
1037 | 0 |
1038 | 0.0505 |
1039 | 0.073 |
104 | 0.101 |
1040 | -0.0702 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11095
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11095
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.548 |
10 | 10 | 0.564 |
100 | 100 | 0.475 |
101 | 101 | 0.651 |
102 | 102 | 0.433 |
103 | 103 | 0.302 |
104 | 104 | 0.75 |
105 | 105 | 0.75 |
106 | 106 | 0.00748 |
107 | 107 | 0.012 |
108 | 108 | 0.589 |
109 | 109 | 0.0985 |
11 | 11 | 0.41 |
110 | 110 | 0.649 |
111 | 111 | 0.472 |
112 | 112 | 0.0355 |
113 | 113 | 0.53 |
114 | 114 | 0.588 |
115 | 115 | 0.352 |
116 | 116 | 0.225 |
117 | 117 | 0.974 |
118 | 118 | 0.664 |
119 | 119 | 0.304 |
12 | 12 | 0.951 |
120 | 120 | 0.966 |
121 | 121 | 0.39 |
122 | 122 | 0.878 |
123 | 123 | 0.319 |
124 | 124 | 0.924 |
125 | 125 | 0.738 |
126 | 126 | 0.133 |
127 | 127 | 0.803 |
128 | 128 | 0.0404 |
129 | 129 | 0.361 |
13 | 13 | 0.00324 |
130 | 130 | 0.497 |
131 | 131 | 0.147 |
132 | 132 | 0.24 |
133 | 133 | 0.368 |
134 | 134 | 0.772 |
135 | 135 | 0.568 |
136 | 136 | 0.0693 |
137 | 137 | 0.891 |
138 | 138 | 0.0707 |
139 | 139 | 0.0968 |
14 | 14 | 0.648 |
140 | 140 | 0.762 |
141 | 141 | 0.386 |
142 | 142 | 0.669 |
143 | 143 | 0.0551 |
144 | 144 | 0.336 |
145 | 145 | 0.206 |
146 | 146 | 0.113 |
147 | 147 | 0.999 |
148 | 148 | 0.136 |
149 | 149 | 0.165 |
15 | 15 | 0.213 |
150 | 150 | 0.26 |
151 | 151 | 0.453 |
152 | 152 | 0.0208 |
153 | 153 | 0.364 |
154 | 154 | 0.961 |
155 | 155 | 0.575 |
156 | 156 | 0.0757 |
157 | 157 | 0.22 |
158 | 158 | 0.26 |
159 | 159 | 0.646 |
160 | 160 | 0.101 |
161 | 161 | 0.518 |
162 | 162 | 0.265 |
163 | 163 | 0.104 |
164 | 164 | 0.221 |
165 | 165 | 0.316 |
166 | 166 | 0.83 |
167 | 167 | 0.217 |
168 | 168 | 0.165 |
169 | 169 | 0.0244 |
17 | 17 | 0.133 |
18 | 18 | 0.738 |
19 | 19 | 0.0588 |
2 | 2 | 0.0439 |
20 | 20 | 0.222 |
21 | 21 | 0.827 |
22 | 22 | 0.242 |
23 | 23 | 0.407 |
24 | 24 | 0.963 |
25 | 25 | 0.93 |
26 | 26 | 0.0115 |
27 | 27 | 0.371 |
28 | 28 | 0.78 |
29 | 29 | 0.979 |
3 | 3 | 0.506 |
30 | 30 | 0.152 |
31 | 31 | 0.497 |
32 | 32 | 0.0577 |
33 | 33 | 0.194 |
34 | 34 | 0.366 |
35 | 35 | 0.906 |
36 | 36 | 0.599 |
37 | 37 | 0.0734 |
38 | 38 | 0.512 |
39 | 39 | 0.233 |
4 | 4 | 0.397 |
40 | 40 | 0.349 |
41 | 41 | 0.464 |
42 | 42 | 0.944 |
43 | 43 | 0.271 |
44 | 44 | 0.791 |
45 | 45 | 0.117 |
46 | 46 | 0.434 |
47 | 47 | 0.653 |
48 | 48 | 0.489 |
49 | 49 | 0.454 |
5 | 5 | 0.549 |
50 | 50 | 0.492 |
51 | 51 | 0.564 |
52 | 52 | 0.021 |
53 | 53 | 0.636 |
54 | 54 | 0.625 |
55 | 55 | 0.352 |
56 | 56 | 0.37 |
57 | 57 | 0.303 |
58 | 58 | 0.529 |
59 | 59 | 0.138 |
6 | 6 | 0.583 |
60 | 60 | 0.0353 |
61 | 61 | 0.661 |
62 | 62 | 0.738 |
63 | 63 | 0.333 |
64 | 64 | 0.808 |
65 | 65 | 0.305 |
66 | 66 | 0.341 |
67 | 67 | 0.175 |
68 | 68 | 0.922 |
69 | 69 | 0.86 |
7 | 7 | 0.145 |
70 | 70 | 0.181 |
71 | 71 | 0.184 |
72 | 72 | 0.422 |
73 | 73 | 0.153 |
74 | 74 | 0.811 |
75 | 75 | 0.455 |
76 | 76 | 0.202 |
77 | 77 | 0.0305 |
78 | 78 | 0.0921 |
79 | 79 | 0.75 |
8 | 8 | 0.664 |
80 | 80 | 0.697 |
81 | 81 | 0.506 |
82 | 82 | 0.17 |
83 | 83 | 0.977 |
84 | 84 | 0.541 |
85 | 85 | 0.115 |
86 | 86 | 0.334 |
87 | 87 | 0.0638 |
88 | 88 | 0.912 |
89 | 89 | 0.146 |
9 | 9 | 0.591 |
90 | 90 | 0.89 |
91 | 91 | 0.634 |
92 | 92 | 0.383 |
93 | 93 | 0.435 |
94 | 94 | 0.16 |
95 | 95 | 0.339 |
96 | 96 | 0.561 |
97 | 97 | 0.333 |
98 | 98 | 0.894 |
99 | 99 | 0.0322 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11095
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000313 (mouse neonate N7 sample)
0011411 (mouse intestine- neonate N07 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)