FF:720-20F2: Difference between revisions

Latest revision as of 19:20, 4 June 2020

Name:	intestine, neonate N07
Species:	Mouse (Mus musculus)
Library ID:	CNhs11095
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	intestine
dev stage	7 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005632

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11095		CAGE		DRX008999		DRR009873

Accession ID Mm9

Library id		BAM		CTSS
CNhs11095		DRZ001298		DRZ002681

Accession ID Mm10

Library id		BAM		CTSS
CNhs11095		DRZ012648		DRZ014031

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11095

0	0
1	0
10	0
100	0
1000	0.112
1001	0.0408
1002	0.0987
1003	-0.00817
1004	0
1005	0.203
1006	-0.00622
1007	-0.0285
1008	0.203
1009	0.189
101	-0.0869
1010	0
1011	0
1012	0
1013	0.197
1014	0.0788
1015	-0.0848
1016	-0.111
1017	0
1018	0.414
1019	0
102	0
1020	0
1021	-0.0487
1022	0.00841
1023	0
1024	0
1025	0.869
1026	0
1027	0
1028	0
1029	0.226
103	0.145
1030	0
1031	0.0889
1032	0.36
1033	-0.017
1034	0
1035	0
1036	-0.118
1037	0
1038	0.0505
1039	0.073
104	0.101
1040	-0.0702
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11095

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.161
MA0003.1	MA0003.1	0.0631
MA0004.1	MA0004.1	0.81
MA0006.1	MA0006.1	0.0375
MA0007.1	MA0007.1	0.512
MA0009.1	MA0009.1	0.285
MA0014.1	MA0014.1	0.866
MA0017.1	MA0017.1	2.45371e-28
MA0018.2	MA0018.2	5.80675e-4
MA0019.1	MA0019.1	0.222
MA0024.1	MA0024.1	0.026
MA0025.1	MA0025.1	0.279
MA0027.1	MA0027.1	0.0915
MA0028.1	MA0028.1	0.0782
MA0029.1	MA0029.1	0.86
MA0030.1	MA0030.1	0.265
MA0031.1	MA0031.1	0.141
MA0035.2	MA0035.2	1.71543e-6
MA0038.1	MA0038.1	0.817
MA0039.2	MA0039.2	8.91859e-5
MA0040.1	MA0040.1	0.214
MA0041.1	MA0041.1	0.755
MA0042.1	MA0042.1	0.612
MA0043.1	MA0043.1	0.00128
MA0046.1	MA0046.1	2.95544e-80
MA0047.2	MA0047.2	3.09732e-6
MA0048.1	MA0048.1	0.842
MA0050.1	MA0050.1	7.35344e-9
MA0051.1	MA0051.1	9.16829e-6
MA0052.1	MA0052.1	4.05783e-4
MA0055.1	MA0055.1	0.0317
MA0057.1	MA0057.1	0.126
MA0058.1	MA0058.1	0.515
MA0059.1	MA0059.1	0.552
MA0060.1	MA0060.1	0.029
MA0061.1	MA0061.1	0.554
MA0062.2	MA0062.2	0.0201
MA0065.2	MA0065.2	6.12927e-13
MA0066.1	MA0066.1	0.164
MA0067.1	MA0067.1	0.384
MA0068.1	MA0068.1	0.579
MA0069.1	MA0069.1	0.0504
MA0070.1	MA0070.1	0.316
MA0071.1	MA0071.1	0.683
MA0072.1	MA0072.1	0.631
MA0073.1	MA0073.1	0.789
MA0074.1	MA0074.1	0.267
MA0076.1	MA0076.1	0.0314
MA0077.1	MA0077.1	0.0848
MA0078.1	MA0078.1	0.152
MA0079.2	MA0079.2	0.22
MA0080.2	MA0080.2	0.00554
MA0081.1	MA0081.1	0.0459
MA0083.1	MA0083.1	0.122
MA0084.1	MA0084.1	0.895
MA0087.1	MA0087.1	0.337
MA0088.1	MA0088.1	0.98
MA0090.1	MA0090.1	0.441
MA0091.1	MA0091.1	0.474
MA0092.1	MA0092.1	0.2
MA0093.1	MA0093.1	0.731
MA0099.2	MA0099.2	0.0139
MA0100.1	MA0100.1	0.0111
MA0101.1	MA0101.1	0.72
MA0102.2	MA0102.2	0.49
MA0103.1	MA0103.1	3.01343e-5
MA0104.2	MA0104.2	0.0955
MA0105.1	MA0105.1	0.585
MA0106.1	MA0106.1	0.97
MA0107.1	MA0107.1	0.714
MA0108.2	MA0108.2	4.20206e-5
MA0111.1	MA0111.1	0.49
MA0112.2	MA0112.2	7.13084e-4
MA0113.1	MA0113.1	0.559
MA0114.1	MA0114.1	2.55266e-33
MA0115.1	MA0115.1	1.17646e-8
MA0116.1	MA0116.1	0.522
MA0117.1	MA0117.1	0.771
MA0119.1	MA0119.1	0.046
MA0122.1	MA0122.1	0.867
MA0124.1	MA0124.1	0.408
MA0125.1	MA0125.1	0.58
MA0131.1	MA0131.1	0.433
MA0135.1	MA0135.1	0.00854
MA0136.1	MA0136.1	0.0626
MA0137.2	MA0137.2	0.599
MA0138.2	MA0138.2	0.718
MA0139.1	MA0139.1	0.0448
MA0140.1	MA0140.1	0.0779
MA0141.1	MA0141.1	0.0292
MA0142.1	MA0142.1	0.106
MA0143.1	MA0143.1	0.0338
MA0144.1	MA0144.1	0.0352
MA0145.1	MA0145.1	0.00827
MA0146.1	MA0146.1	0.183
MA0147.1	MA0147.1	0.0487
MA0148.1	MA0148.1	8.47275e-9
MA0149.1	MA0149.1	0.0574
MA0150.1	MA0150.1	0.973
MA0152.1	MA0152.1	0.805
MA0153.1	MA0153.1	7.98129e-50
MA0154.1	MA0154.1	0.0174
MA0155.1	MA0155.1	0.0369
MA0156.1	MA0156.1	0.13
MA0157.1	MA0157.1	0.214
MA0159.1	MA0159.1	0.0327
MA0160.1	MA0160.1	0.154
MA0162.1	MA0162.1	0.275
MA0163.1	MA0163.1	0.0185
MA0164.1	MA0164.1	0.949
MA0258.1	MA0258.1	0.102
MA0259.1	MA0259.1	0.0577

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11095

Novel motif	Logo	P-value
1	1	0.548
10	10	0.564
100	100	0.475
101	101	0.651
102	102	0.433
103	103	0.302
104	104	0.75
105	105	0.75
106	106	0.00748
107	107	0.012
108	108	0.589
109	109	0.0985
11	11	0.41
110	110	0.649
111	111	0.472
112	112	0.0355
113	113	0.53
114	114	0.588
115	115	0.352
116	116	0.225
117	117	0.974
118	118	0.664
119	119	0.304
12	12	0.951
120	120	0.966
121	121	0.39
122	122	0.878
123	123	0.319
124	124	0.924
125	125	0.738
126	126	0.133
127	127	0.803
128	128	0.0404
129	129	0.361
13	13	0.00324
130	130	0.497
131	131	0.147
132	132	0.24
133	133	0.368
134	134	0.772
135	135	0.568
136	136	0.0693
137	137	0.891
138	138	0.0707
139	139	0.0968
14	14	0.648
140	140	0.762
141	141	0.386
142	142	0.669
143	143	0.0551
144	144	0.336
145	145	0.206
146	146	0.113
147	147	0.999
148	148	0.136
149	149	0.165
15	15	0.213
150	150	0.26
151	151	0.453
152	152	0.0208
153	153	0.364
154	154	0.961
155	155	0.575
156	156	0.0757
157	157	0.22
158	158	0.26
159	159	0.646
160	160	0.101
161	161	0.518
162	162	0.265
163	163	0.104
164	164	0.221
165	165	0.316
166	166	0.83
167	167	0.217
168	168	0.165
169	169	0.0244
17	17	0.133
18	18	0.738
19	19	0.0588
2	2	0.0439
20	20	0.222
21	21	0.827
22	22	0.242
23	23	0.407
24	24	0.963
25	25	0.93
26	26	0.0115
27	27	0.371
28	28	0.78
29	29	0.979
3	3	0.506
30	30	0.152
31	31	0.497
32	32	0.0577
33	33	0.194
34	34	0.366
35	35	0.906
36	36	0.599
37	37	0.0734
38	38	0.512
39	39	0.233
4	4	0.397
40	40	0.349
41	41	0.464
42	42	0.944
43	43	0.271
44	44	0.791
45	45	0.117
46	46	0.434
47	47	0.653
48	48	0.489
49	49	0.454
5	5	0.549
50	50	0.492
51	51	0.564
52	52	0.021
53	53	0.636
54	54	0.625
55	55	0.352
56	56	0.37
57	57	0.303
58	58	0.529
59	59	0.138
6	6	0.583
60	60	0.0353
61	61	0.661
62	62	0.738
63	63	0.333
64	64	0.808
65	65	0.305
66	66	0.341
67	67	0.175
68	68	0.922
69	69	0.86
7	7	0.145
70	70	0.181
71	71	0.184
72	72	0.422
73	73	0.153
74	74	0.811
75	75	0.455
76	76	0.202
77	77	0.0305
78	78	0.0921
79	79	0.75
8	8	0.664
80	80	0.697
81	81	0.506
82	82	0.17
83	83	0.977
84	84	0.541
85	85	0.115
86	86	0.334
87	87	0.0638
88	88	0.912
89	89	0.146
9	9	0.591
90	90	0.89
91	91	0.634
92	92	0.383
93	93	0.435
94	94	0.16
95	95	0.339
96	96	0.561
97	97	0.333
98	98	0.894
99	99	0.0322

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11095

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011411 mouse intestine- neonate N07 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000313 (mouse neonate N7 sample)
0011411 (mouse intestine- neonate N07 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005632
+|accession_numbers=CAGE;DRX008999;DRR009873;DRZ001298;DRZ002681;DRZ012648;DRZ014031
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:88969376..88969395,-!p1@Nr1h4!2.25!176.47!Nr1h4;;chr10:80555320..80555378,-!p1@Creb3l3!2.20!183.04!Creb3l3;;chr3:3634145..3634161,+!p1@Hnf4g!2.11!127.33!Hnf4g;;chr5:148118639..148118715,-!p1@Cdx2!2.08!119.77!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!1.91!81.17!Nr1i2;;chr2:163372884..163372904,+!p1@Hnf4a!1.80!62.47!Hnf4a;;chr1:137155026..137155042,-!p1@Elf3!1.67!256.45!Elf3;;chr2:164228702..164228719,+!p1@Rbpjl!1.64!42.58!Rbpjl;;chr10:22539932..22539956,-!p1@Tcf21!1.54!87.94!Tcf21;;chr14:63864056..63864102,-!p1@Gata4!1.45!46.16!Gata4;;chr10:80555398..80555409,-!p2@Creb3l3!1.42!25.27!Creb3l3;;chr2:163332558..163332596,+!p2@Hnf4a!1.42!25.27!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.41!24.47!Isx;;chr2:173044380..173044432,-!p1@Zbp1!1.38!54.12!Zbp1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.38!22.88!Nkx2-3;;chr3:3508024..3508069,+!p2@Hnf4g!1.36!21.69!Hnf4g;;chr7:148452314..148452329,-!p1@Irf7!1.32!135.29!Irf7;;chr8:123608252..123608268,+!p1@Foxf1a!1.32!29.45!Foxf1a;;chr8:77397095..77397127,+!p2@Isx!1.32!19.70!Isx;;chr1:173144144..173144176,+!p1@Nr1i3!1.32!19.70!Nr1i3;;chr9:59796270..59796294,-!p4@Nr2e3!1.31!19.50!Nr2e3;;chr18:61195843..61195864,-!p2@Cdx1!1.31!19.50!Cdx1;;chr2:180069370..180069409,-!p1@Gata5!1.30!22.28!Gata5;;chr2:103123925..103123959,-!p3@Ehf!1.29!18.30!Ehf;;chr17:27865882..27865901,-!p1@Spdef!1.27!17.71!Spdef;;chr18:61195865..61195880,-!p1@Cdx1!1.23!16.12!Cdx1;;chr3:94176733..94176794,+!p1@Rorc!1.22!117.78!Rorc;;chr1:173144100..173144138,+!p2@Nr1i3!1.21!15.12!Nr1i3;;chr4:133109285..133109308,+!p1@Nr0b2!1.19!14.52!Nr0b2;;chr5:115421065..115421088,-!p1@Hnf1a!1.19!14.52!Hnf1a;;chr14:99697871..99697934,+!p1@Klf5!1.17!266.60!Klf5;;chr11:57645506..57645523,-!p1@Hand1!1.17!13.93!Hand1;;chr5:148118792..148118806,-!p3@Cdx2!1.16!13.53!Cdx2;;chr5:148118840..148118857,-!p2@Cdx2!1.16!13.33!Cdx2;;chr2:103143336..103143367,-!p1@Ehf!1.15!21.09!Ehf;;chr3:30039329..30039355,-!p5@Mecom!1.14!12.73!Mecom;;chr8:77397492..77397514,+!p3@Isx!1.14!12.73!Isx;;chr13:31717548..31717596,+!p1@Foxf2!1.13!24.67!Foxf2;;chr9:59797503..59797513,-!p3@Nr2e3!1.13!12.53!Nr2e3;;chr9:59796330..59796350,-!p6@Nr2e3!1.13!12.34!Nr2e3;;chr10:44178521..44178557,-!p1@Prdm1!1.12!21.49!Prdm1;;chr18:64499674..64499696,+!p1@Onecut2!1.12!20.89!Onecut2;;chr10:88996336..88996380,-!p2@Nr1h4!1.12!15.12!Nr1h4;;chr6:64679112..64679126,+!p1@Atoh1!1.12!12.14!Atoh1;;chr8:59799772..59799789,+!p1@Hand2!1.10!33.42!Hand2;;chr6:86619104..86619119,-!p1@Mxd1!1.09!91.52!Mxd1;;chr18:64499706..64499721,+!p2@Onecut2!1.08!15.72!Onecut2;;chr1:165219345..165219366,-!p7@Prrx1!1.08!11.14!Prrx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.07!43.17!Mlxipl;;chr9:59797525..59797538,-!p2@Nr2e3!1.04!9.95!Nr2e3;;chr1:194982959..194983007,+!p5@Irf6!1.04!9.95!Irf6;;chr7:19608891..19608895,-!p1@Foxa3!1.03!12.73!Foxa3;;chr9:59797133..59797145,-!p7@Nr2e3!1.03!9.75!Nr2e3;;chr8:77396650..77396662,+!p4@Isx!1.03!9.75!Isx;;chr13:55932591..55932622,-!p1@Pitx1!1.02!11.34!Pitx1;;chr10:44178375..44178390,-!p2@Prdm1!0.99!12.14!Prdm1;;chr11:98614335..98614349,+!p8@Thra!0.99!8.75!Thra;;chr2:163372869..163372882,+!p3@Hnf4a!0.99!8.75!Hnf4a;;chr3:90046995..90047031,-!p2@Creb3l4!0.98!10.74!Creb3l4;;chr13:31650026..31650045,+!p2@Foxq1!0.97!14.32!Foxq1;;chr10:44178474..44178487,-!p4@Prdm1!0.97!12.14!Prdm1;;chr3:3508005..3508021,+!p3@Hnf4g!0.97!8.36!Hnf4g;;chr6:16848443..16848459,-!p3@Tfec!0.97!8.36!Tfec;;chr18:11052485..11052508,+!p2@Gata6!0.96!23.48!Gata6;;chr7:17642177..17642223,-!p3@Hif3a!0.96!8.16!Hif3a;;chr13:31650185..31650201,+!p1@Foxq1!0.95!28.45!Foxq1;;chr14:63890519..63890539,-!p3@Gata4!0.95!7.96!Gata4;;chr6:52190467..52190500,-!p1@Hoxa10!0.94!7.76!Hoxa10;;chr8:77397190..77397202,+!p5@Isx!0.94!7.76!Isx;;chr5:67490284..67490302,-!p1@Phox2b!0.92!7.36!Phox2b;;chr2:160192793..160192809,-!p1@Mafb!0.91!112.01!Mafb;;chr18:11052642..11052659,+!p1@Gata6!0.91!37.60!Gata6;;chr19:53384910..53384937,+!p3@Mxi1!0.91!20.69!Mxi1;;chr10:44178493..44178520,-!p3@Prdm1!0.91!10.15!Prdm1;;chr14:63890545..63890560,-!p5@Gata4!0.91!7.16!Gata4;;chr1:194979315..194979359,+!p1@Irf6!0.90!44.17!Irf6;;chr2:77357622..77357704,-!p1@Zfp385b!0.90!19.50!Zfp385b;;chr9:59797088..59797101,-!p9@Nr2e3!0.90!6.96!Nr2e3;;chr2:173044357..173044377,-!p2@Zbp1!0.88!9.55!Zbp1;;chr2:180069640..180069660,-!p4@Gata5!0.88!6.57!Gata5;;chr6:83020355..83020371,-!p1@Tlx2!0.88!6.57!Tlx2;;chr5:148118614..148118625,-!p4@Cdx2!0.86!6.17!Cdx2;;chr11:83664365..83664383,+!p1@Hnf1b!0.86!6.17!Hnf1b;;chr12:39510206..39510249,+!p3@Etv1!0.84!5.97!Etv1;;chr2:153067079..153067090,-!p2@Plagl2!0.83!12.73!Plagl2;;chr2:180069410..180069421,-!p3@Gata5!0.83!5.77!Gata5;;chr2:19367259..19367278,+!p1@Ptf1a!0.82!5.57!Ptf1a;;chr11:83664334..83664353,+!p2@Hnf1b!0.82!5.57!Hnf1b;;chr14:63890491..63890516,-!p2@Gata4!0.79!5.17!Gata4;;chr8:118231678..118231692,-!p2@Maf!0.78!50.14!Maf;;chr8:123260252..123260264,+!p1@Irf8!0.78!38.20!Irf8;;chr15:97738692..97738747,-!p1@Vdr!0.78!29.84!Vdr;;chr11:53583544..53583559,+!p1@Irf1!0.77!89.53!Irf1;;chr5:120121446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-!p15@Ncoa7!0.15!0.40!Ncoa7;;chr11:96143962..96144035,+!p2@Hoxb8!0.15!0.40!Hoxb8;;chr11:62272200..62272221,-!p11@Ncor1!0.15!0.40!Ncor1;;chr2:74536026..74536039,+!p1@Hoxd9!0.15!0.40!Hoxd9;;chr3:94181331..94181345,+!p4@Rorc!0.15!0.40!Rorc;;chr2:74517609..74517621,+!p3@Hoxd11!0.15!0.40!Hoxd11;;chr4:84321317..84321332,-!p4@Bnc2!0.15!0.40!Bnc2;;chr3:29912310..29912321,-!p23@Mecom!0.15!0.40!Mecom;;chr4:84321280..84321298,-!p5@Bnc2!0.15!0.40!Bnc2;;chr3:89191234..89191245,-!p15@Zbtb7b!0.15!0.40!Zbtb7b;;chr14:63864337..63864381,-!p6@Gata4!0.15!0.40!Gata4;;chr13:31717775..31717788,+!p4@Foxf2!0.15!0.40!Foxf2;;chr13:29045308..29045318,-!p10@Sox4!0.15!0.40!Sox4;;chr12:87027663..87027678,+!p2@Batf!0.15!0.40!Batf;;chr12:37835248..37835260,+!p4@Meox2!0.15!0.40!Meox2;;chr14:76887566..76887579,+!p18@Tsc22d1!0.15!0.40!Tsc22d1;;chr13:31717662..31717669,+!p6@Foxf2!0.15!0.40!Foxf2;;chr15:25914088..25914091,+!p6@Zfp622!0.15!0.40!Zfp622;;chr13:112476407..112476418,+!p6@Mier3!0.15!0.40!Mier3;;chr16:55819071..55819073,-!p11@Nfkbiz!0.15!0.40!Nfkbiz;;chr15:85565338..85565355,+!p7@Ppara!0.15!0.40!Ppara;;chr19:12871064..12871095,-!p2@Zfp91!0.15!0.40!Zfp91;;chr17:71201050..71201078,-!p9@Tgif1!0.15!0.40!Tgif1;;chr16:18588291..18588301,-!p2@Tbx1!0.15!0.40!Tbx1;;chr15:79178559..79178584,+!p8@Maff!0.15!0.40!Maff;;chr14:75684150..75684197,+!p1@Zc3h13!0.14!39.99!Zc3h13;;chr11:60034052..60034134,-!p2@Srebf1!0.14!28.85!Srebf1;;chr12:32635078..32635111,-!p1@Hbp1!0.14!26.06!Hbp1;;chr17:28487692..28487765,-!p1@Tead3!0.14!24.07!Tead3;;chr1:95651138..95651255,-!p1@Thap4!0.14!17.51!Thap4;;chr6:72849716..72849805,-!p1@Kcmf1!0.14!14.92!Kcmf1;;chr18:80904854..80904919,-!p2@Nfatc1!0.14!14.32!Nfatc1;;chr5:108697916..108697943,+!p2@Dr1!0.14!13.93!Dr1;;chr19:5637708..5637730,+!p3@Rela!0.14!11.74!Rela;;chr7:28645585..28645659,+!p1@Zfp607!0.14!11.34!Zfp607;;chr15:99532568..99532636,+!p2@Smarcd1!0.14!10.54!Smarcd1;;chr2:169458192..169458247,+!p1@Tshz2!0.14!10.35!Tshz2;;chr10:119913310..119913366,-!p1@Hmga2!0.14!9.15!Hmga2;;chr5:145992626..145992652,+!p2@Zfp655!0.14!7.96!Zfp655;;chr2:152223469..152223512,-!p1@Sox12!0.14!5.77!Sox12;;chr18:83084030..83084056,+!p1@Zfp516!0.14!5.57!Zfp516;;chr10:41996550..41996569,-!p2@Foxo3!0.14!4.97!Foxo3;;chr19:28085485..28085544,-!p5@Rfx3!0.14!4.18!Rfx3;;chr2:115891409..115891425,-!p2@Meis2!0.14!2.79!Meis2;;chr4:148178559..148178603,+!p1@Casz1!0.14!2.79!Casz1;;chr8:72520225..72520248,-!p9@Gatad2a!0.14!2.59!Gatad2a;;chr5:65194709..65194716,+!p10@Klf3!0.14!1.59!Klf3;;chr13:99954688..99954710,+!p2@Zfp366!0.14!1.59!Zfp366;;chr17:25151251..25151279,-!p4@Cramp1l!0.14!1.39!Cramp1l;;chr10:67599375..67599386,-!p3@Arid5b!0.14!1.39!Arid5b;;chr3:30993616..30993634,+!p3@Skil!0.14!1.39!Skil;;chr3:51081392..51081407,-!p8@Elf2!0.14!1.19!Elf2;;chr17:71200415..71200427,-!p5@Tgif1!0.14!1.19!Tgif1;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.14!1.19!Hmga1;;chr5:147760331..147760336,+!p5@Gtf3a!0.14!1.19!Gtf3a;;chr6:72185179..72185196,-!p4@Atoh8!0.14!0.80!Atoh8;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.14!0.80!Zfhx3;;chr10:126723307..126723319,-!p6@Mbd6!0.14!0.80!Mbd6;;chr19:23216166..23216191,+!p6@Klf9!0.14!0.80!Klf9;;chr1:120950269..120950287,-!p6@Gli2!0.14!0.80!Gli2;;chr13:44936126..44936164,+!p6@Jarid2!0.14!0.60!Jarid2;;chr6:15135439..15135452,+!p13@Foxp2!0.14!0.60!Foxp2;;chr16:43510301..43510313,+!p24@Zbtb20!0.14!0.60!Zbtb20;;chr17:48015839..48015915,-!p3@Foxp4!0.14!0.60!Foxp4;;chr11:106128936..106128955,-!p4@Smarcd2!0.14!0.60!Smarcd2;;chr18:73863393..73863460,-!p1@Smad4!0.13!109.23!Smad4;;chr11:62270791..62270834,-!p1@Ncor1!0.13!60.88!Ncor1;;chr16:11176363..11176458,-!p1@Zc3h7a!0.13!59.49!Zc3h7a;;
@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011411
 |is_obsolete=
+|library_id=CNhs11095
+|library_id_phase_based=2:CNhs11095
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;720
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;720
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N07.CNhs11095.720-20F2.mm9.nobarcode.rdna.fa.gz
 |name=intestine, neonate N07
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11095,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.332330744837152,0,0,0,0.0788034163803455,0.0394017081901728,0.051001074680885,0,0.00460330363639126,0,0,-0.005535824016196,0,0,0,0,0,0,-0.0464132245958766,0,0,0,0,0,0,0.0788034163803455,0,0,0,0,0,0,0.203125836855006,0,0,0,0.641698143179456,0,0.086266774431346,0,0.00316594440012108,0.212317941622344,0.260007802338807,0,0,0,0,0,0,0,0,0,0,0.0788034163803455,0,0.233889971548167,0,0,0,0,0.0615647025966481,0,0,0.0788034163803455,0,0.0132583813330485,-0.0205379554951175,0.0682367399403389,0.141804476340525,0.0230371397028754,0,0,0.00584511464017026,0,0.145480126286698,0,0,0.039496097760217,-0.0923255728767087,-0.0788315948399074,0,0,0,0,0,0,0.0173893447420794,0.213230112931784,0.159834758425959,0,0,0,0,0
@@ Line 83: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:720-20F2;search_select_hide=table117:720-20F2
 }}

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FF:720-20F2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:20, 4 June 2020

CNhs11095

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0