FFCP PHASE1:Hg19::chr12:93399913..93399929,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:93399913..93399929,+ | |||
|coexpression_cluster_id=C228 | |||
|description=CAGE_peak_at_chr12:93399913..93399929,+ | |description=CAGE_peak_at_chr12:93399913..93399929,+ | ||
|id=chr12:93399913..93399929,+ | |id=chr12:93399913..93399929,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.07e-22!5;CL:0000181!3.04e-17!12;CL:0000417!3.04e-17!12;CL:0000668!3.04e-17!12;CL:0000414!3.04e-17!12;CL:0000412!3.04e-17!12;CL:0000182!3.04e-17!12;CL:0002563!1.18e-13!4;CL:0000306!3.02e-13!4;CL:0002222!3.02e-13!4;CL:0002224!3.02e-13!4;CL:0000148!1.13e-11!10;CL:0000541!1.13e-11!10;CL:0000075!2.42e-11!27;CL:0000223!5.99e-10!59;CL:0000147!1.70e-08!14;CL:0000066!7.10e-08!254;CL:0000325!7.85e-08!39;CL:0002253!9.25e-08!2 | |ontology_enrichment_celltype=CL:0002322!1.07e-22!5;CL:0000181!3.04e-17!12;CL:0000417!3.04e-17!12;CL:0000668!3.04e-17!12;CL:0000414!3.04e-17!12;CL:0000412!3.04e-17!12;CL:0000182!3.04e-17!12;CL:0002563!1.18e-13!4;CL:0000306!3.02e-13!4;CL:0002222!3.02e-13!4;CL:0002224!3.02e-13!4;CL:0000148!1.13e-11!10;CL:0000541!1.13e-11!10;CL:0000075!2.42e-11!27;CL:0000223!5.99e-10!59;CL:0000147!1.70e-08!14;CL:0000066!7.10e-08!254;CL:0000325!7.85e-08!39;CL:0002253!9.25e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.17e-44;12!CL:0002253;5.48e-18;2!CL:0002563;1.12e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.17e-44,12;CL:0002253,5.48e-18,2;CL:0000223,1.02e-14,58;CL:0002563,1.12e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.65e-48;11!UBERON:0009497;6.85e-41;13!UBERON:0003104;6.19e-27;31!UBERON:0001041;3.74e-18;30!CL:0000223;4.87e-08;58 | |||
|ontology_enrichment_disease=DOID:0050619!1.25e-13!1;DOID:1357!1.25e-13!1 | |ontology_enrichment_disease=DOID:0050619!1.25e-13!1;DOID:1357!1.25e-13!1 | ||
|ontology_enrichment_disease_v019=DOID:7;4.00e-13;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,4.09e-14,39;DOID:305,3.00e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001242!1.18e-13!4;UBERON:0001262!1.18e-13!4;UBERON:0004786!1.18e-13!4;UBERON:0004808!1.18e-13!4;UBERON:0001277!1.18e-13!4;UBERON:0001764!1.25e-13!1;UBERON:0001825!1.25e-13!1;UBERON:0010077!3.02e-13!4;UBERON:0005389!3.02e-13!4;UBERON:0000484!3.02e-13!4;UBERON:0002546!3.02e-13!4;UBERON:0000965!3.02e-13!4;UBERON:0001803!3.02e-13!4;UBERON:0003073!3.02e-13!4;UBERON:0005426!3.02e-13!4;UBERON:0003350!4.12e-11!5;UBERON:0002107!5.46e-11!19;UBERON:0006925!5.46e-11!19;UBERON:0008836!5.46e-11!19;UBERON:0003929!6.30e-11!54;UBERON:0008835!1.61e-09!22;UBERON:0003894!1.61e-09!22;UBERON:0009854!4.09e-09!23;UBERON:0007499!2.11e-08!25;UBERON:0009497!2.11e-08!25;UBERON:0000015!2.11e-08!25;UBERON:0002423!2.11e-08!25;UBERON:0006235!2.11e-08!25;UBERON:0004161!2.11e-08!25;UBERON:0005057!4.38e-08!26;UBERON:0009856!4.38e-08!26;UBERON:0000076!4.55e-07!8;UBERON:0005911!5.58e-07!82;UBERON:0002365!8.30e-07!31;UBERON:0002330!8.30e-07!31 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.07e-28;19!UBERON:0006925;3.07e-28;19!UBERON:0002423;1.21e-21;25!UBERON:0002365;1.16e-16;31!UBERON:0002330;1.16e-16;31!UBERON:0002368;3.72e-15;33!UBERON:0000949;1.56e-11;43!UBERON:0001052;1.12e-09;4!UBERON:0001242;1.12e-09;4!UBERON:0001262;1.12e-09;4!UBERON:0004786;1.12e-09;4!UBERON:0004808;1.12e-09;4!UBERON:0001277;1.12e-09;4!UBERON:0004907;5.35e-08;5!UBERON:0002417;1.10e-07;58!UBERON:0000916;1.10e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.07e-28,19;UBERON:0006925,3.07e-28,19;UBERON:0008836,3.07e-28,19;UBERON:0008835,1.71e-24,22;UBERON:0003894,1.71e-24,22;UBERON:0009854,1.84e-23,23;UBERON:0007499,1.21e-21,25;UBERON:0009497,1.21e-21,25;UBERON:0000015,1.21e-21,25;UBERON:0002423,1.21e-21,25;UBERON:0006235,1.21e-21,25;UBERON:0004161,1.21e-21,25;UBERON:0009856,7.73e-21,26;UBERON:0002365,1.37e-17,31;UBERON:0002330,1.37e-17,31;UBERON:0003929,9.10e-16,54;UBERON:0002368,1.18e-15,35;UBERON:0000949,2.58e-12,45;UBERON:0005911,1.51e-10,82;UBERON:0005172,2.34e-10,54;UBERON:0005173,2.34e-10,54;UBERON:0001052,1.12e-09,4;UBERON:0001242,1.12e-09,4;UBERON:0001262,1.12e-09,4;UBERON:0004786,1.12e-09,4;UBERON:0004808,1.12e-09,4;UBERON:0001277,1.12e-09,4;UBERON:0002530,1.59e-09,59;UBERON:0002417,2.25e-09,60;UBERON:0000916,2.25e-09,60;UBERON:0004907,5.35e-08,5;UBERON:0004921,2.19e-07,118 | |||
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|short_description=p@chr12:93399913..93399929,+ | |short_description=p@chr12:93399913..93399929,+ | ||
}} | }} |
Latest revision as of 13:39, 24 July 2015
Short description: | p@chr12:93399913..93399929, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:93399913..93399929, + |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.17e-44 | 12 |
epithelial cell of large intestine | 5.48e-18 | 2 |
endodermal cell | 1.02e-14 | 58 |
intestinal epithelial cell | 1.12e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 3.07e-28 | 19 |
digestive gland | 3.07e-28 | 19 |
liver bud | 3.07e-28 | 19 |
hepatic diverticulum | 1.71e-24 | 22 |
liver primordium | 1.71e-24 | 22 |
digestive tract diverticulum | 1.84e-23 | 23 |
epithelial sac | 1.21e-21 | 25 |
epithelium of foregut-midgut junction | 1.21e-21 | 25 |
anatomical boundary | 1.21e-21 | 25 |
hepatobiliary system | 1.21e-21 | 25 |
foregut-midgut junction | 1.21e-21 | 25 |
septum transversum | 1.21e-21 | 25 |
sac | 7.73e-21 | 26 |
exocrine gland | 1.37e-17 | 31 |
exocrine system | 1.37e-17 | 31 |
gut epithelium | 9.10e-16 | 54 |
endocrine gland | 1.18e-15 | 35 |
endocrine system | 2.58e-12 | 45 |
endo-epithelium | 1.51e-10 | 82 |
abdomen element | 2.34e-10 | 54 |
abdominal segment element | 2.34e-10 | 54 |
rectum | 1.12e-09 | 4 |
intestinal mucosa | 1.12e-09 | 4 |
wall of intestine | 1.12e-09 | 4 |
gastrointestinal system mucosa | 1.12e-09 | 4 |
gastrointestinal system epithelium | 1.12e-09 | 4 |
intestinal epithelium | 1.12e-09 | 4 |
gland | 1.59e-09 | 59 |
abdominal segment of trunk | 2.25e-09 | 60 |
abdomen | 2.25e-09 | 60 |
lower digestive tract | 5.35e-08 | 5 |
subdivision of digestive tract | 2.19e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 4.09e-14 | 39 |
carcinoma | 3.00e-08 | 106 |