FFCP PHASE1:Hg19::chr20:50253078..50253081,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:50253078..50253081,+ | |||
|coexpression_cluster_id=C186 | |||
|description=CAGE_peak_at_chr20:50253078..50253081,+ | |description=CAGE_peak_at_chr20:50253078..50253081,+ | ||
|id=chr20:50253078..50253081,+ | |id=chr20:50253078..50253081,+ | ||
|ontology_enrichment_celltype=CL:0002202!2.46e-19!9;CL:0002632!2.46e-19!9;CL:0002368!5.40e-17!13;CL:0002328!6.72e-12!3;CL:0000068!1.29e-11!3;CL:0000069!1.29e-11!3;CL:0000307!1.29e-11!3;CL:0000377!1.29e-11!3;CL:0000066!2.14e-09!254;CL:0002076!5.75e-08!43;CL:0000223!2.24e-07!59 | |ontology_enrichment_celltype=CL:0002202!2.46e-19!9;CL:0002632!2.46e-19!9;CL:0002368!5.40e-17!13;CL:0002328!6.72e-12!3;CL:0000068!1.29e-11!3;CL:0000069!1.29e-11!3;CL:0000307!1.29e-11!3;CL:0000377!1.29e-11!3;CL:0000066!2.14e-09!254;CL:0002076!5.75e-08!43;CL:0000223!2.24e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.25e-13;1!CL:1000600;1.25e-13;1!CL:0002202;4.59e-13;9!CL:0002632;4.59e-13;9!CL:0002368;3.22e-09;13!CL:0002535;1.20e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,8.58e-14,1;CL:1000600,8.58e-14,1;CL:0002202,5.88e-13,9;CL:0002632,5.88e-13,9;CL:0002368,3.81e-09,13;CL:0002535,1.36e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0007123;8.71e-11;5!UBERON:0008814;1.20e-07;2!UBERON:0010056;1.20e-07;2 | |||
|ontology_enrichment_disease=DOID:305!6.34e-12!106;DOID:0050687!3.11e-11!143;DOID:162!1.29e-10!235;DOID:14566!3.19e-10!239;DOID:1749!7.34e-09!14;DOID:3908!5.94e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3111;5.15e-14;1!DOID:3603;5.15e-14;1!DOID:3112;1.25e-13;1!DOID:1749;9.07e-09;14!DOID:3910;1.87e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,3.98e-14,1;DOID:3603,3.98e-14,1;DOID:3112,1.10e-13,1;DOID:1749,9.31e-09,14;DOID:3910,2.40e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007196!4.80e-12!14;UBERON:0001558!4.80e-12!14;UBERON:0004815!6.72e-12!3;UBERON:0002031!6.72e-12!3;UBERON:0002185!5.06e-09!4;UBERON:0002046!3.18e-07!5;UBERON:0004117!3.18e-07!5;UBERON:0007689!3.18e-07!5;UBERON:0007123!3.18e-07!5;UBERON:0003091!3.18e-07!5;UBERON:0005178!4.88e-07!34;UBERON:0002224!4.88e-07!34;UBERON:0005181!8.63e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.25e-13;1!UBERON:0001256;1.25e-13;1!UBERON:0001259;1.25e-13;1!UBERON:0002046;8.71e-11;5!UBERON:0007196;4.65e-08;15!UBERON:0001558;4.65e-08;15!UBERON:0006955;1.20e-07;2!UBERON:0004801;1.20e-07;2!UBERON:0001255;1.87e-07;2!UBERON:0004903;1.87e-07;2!UBERON:0001556;1.87e-07;2!UBERON:0002173;1.87e-07;2!UBERON:0002186;1.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,8.58e-14,1;UBERON:0001256,8.58e-14,1;UBERON:0001259,8.58e-14,1;UBERON:0002046,8.71e-11,5;UBERON:0004117,8.71e-11,5;UBERON:0007689,8.71e-11,5;UBERON:0007123,8.71e-11,5;UBERON:0003091,8.71e-11,5;UBERON:0007196,5.38e-08,15;UBERON:0001558,5.38e-08,15;UBERON:0006955,1.36e-07,2;UBERON:0004801,1.36e-07,2;UBERON:0001255,1.54e-07,2;UBERON:0001556,1.54e-07,2;UBERON:0004903,2.40e-07,2;UBERON:0002173,2.40e-07,2;UBERON:0002186,2.40e-07,2;UBERON:0008814,8.84e-07,18 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0.919421224478927,0.90361775633475,1.10926203050036,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.192444225451024,0.670302275535787,7.62236894029258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0.445234820091624,2.30725423917463,0,0,0,0,0,0.123084805461069,0,0.629078458031288,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37216902944498,0.123563938946503,0.626531697032732,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,2.17648016451006,0,0,0,0,0,0,0,0,1.09633539717401,0.596143835108969,0,0,0.64127056201227,0,0.19980960958213,0,0,0,0,0.248505071130865,0.235694034616795,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0.35857467866569,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24980407962107,0.151649117541648,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74705760366215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,2.65709032145778,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0,0.806637912890455,0,0,0,0.118193840883968,1.55723962648897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3513205100492,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12131862580613,0,0,0,0,0,0,0,1.79087190944144,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:50253078..50253081,+ | |short_description=p@chr20:50253078..50253081,+ | ||
}} | }} |
Latest revision as of 15:21, 28 July 2015
Short description: | p@chr20:50253078..50253081, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:50253078..50253081, + |
Coexpression cluster: | C186_squamous_papillotubular_large_Tracheal_oral_Small_epidermoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 8.58e-14 | 1 |
lower urinary tract cell | 8.58e-14 | 1 |
epithelial cell of tracheobronchial tree | 5.88e-13 | 9 |
epithelial cell of lower respiratory tract | 5.88e-13 | 9 |
respiratory epithelial cell | 3.81e-09 | 13 |
epithelial cell of cervix | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 8.58e-14 | 1 |
wall of urinary bladder | 8.58e-14 | 1 |
mucosa of urinary bladder | 8.58e-14 | 1 |
thyroid gland | 8.71e-11 | 5 |
pharyngeal pouch | 8.71e-11 | 5 |
thyroid diverticulum | 8.71e-11 | 5 |
pharyngeal pouch 2 | 8.71e-11 | 5 |
thyroid primordium | 8.71e-11 | 5 |
tracheobronchial tree | 5.38e-08 | 15 |
lower respiratory tract | 5.38e-08 | 15 |
uterine epithelium | 1.36e-07 | 2 |
cervix epithelium | 1.36e-07 | 2 |
urinary bladder | 1.54e-07 | 2 |
lower urinary tract | 1.54e-07 | 2 |
bronchoalveolar duct junction | 2.40e-07 | 2 |
alveolar duct | 2.40e-07 | 2 |
bronchiole | 2.40e-07 | 2 |
pharyngeal arch system | 8.84e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 3.98e-14 | 1 |
mucinous cystadenocarcinoma | 3.98e-14 | 1 |
papillary adenocarcinoma | 1.10e-13 | 1 |
squamous cell carcinoma | 9.31e-09 | 14 |
lung adenocarcinoma | 2.40e-07 | 2 |