FFCP PHASE1:Hg19::chr17:39041488..39041501,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54474 | |EntrezGene=54474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20412 | |HGNC=20412 | ||
|TSSclassifier=strong | |||
|UniProt=P35900 | |UniProt=P35900 | ||
|association_with_transcript=0bp_to_NM_019010_5end | |association_with_transcript=0bp_to_NM_019010_5end | ||
|cluster_id=chr17:39041488..39041501,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_KRT20_5end | |description=CAGE_peak_1_at_KRT20_5end | ||
|id=chr17:39041488..39041501,- | |id=chr17:39041488..39041501,- | ||
|ontology_enrichment_celltype=CL:0000047!3.06e-07!8 | |ontology_enrichment_celltype=CL:0000047!3.06e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000123;7.40e-15;2!CL:0000242;7.40e-15;2!CL:0002563;2.03e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.40e-15,2;CL:0002563,2.14e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009847;7.51e-10;3!UBERON:0003353;7.51e-10;3!UBERON:0001045;2.35e-08;1!UBERON:0006242;4.40e-08;1 | |||
|ontology_enrichment_disease=DOID:305!2.12e-11!106;DOID:3119!3.35e-09!14;DOID:0050687!1.05e-08!143;DOID:4362!5.84e-08!5;DOID:299!2.47e-07!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!9.07e-20!35;UBERON:0004921!2.65e-19!129;UBERON:0004185!2.65e-19!129;UBERON:0001007!1.83e-17!155;UBERON:0001555!1.83e-17!155;UBERON:0007026!1.83e-17!155;UBERON:0004119!5.27e-17!169;UBERON:0000925!5.27e-17!169;UBERON:0006595!5.27e-17!169;UBERON:0000160!1.29e-14!27;UBERON:0000059!4.51e-14!11;UBERON:0000077!3.47e-13!130;UBERON:0004907!1.08e-12!5;UBERON:0001052!2.77e-10!4;UBERON:0001155!6.81e-10!9;UBERON:0001046!3.33e-09!19;UBERON:0005911!6.02e-09!82;UBERON:0003929!2.11e-08!54;UBERON:0001041!1.44e-07!98 | |ontology_enrichment_uberon=UBERON:0005409!9.07e-20!35;UBERON:0004921!2.65e-19!129;UBERON:0004185!2.65e-19!129;UBERON:0001007!1.83e-17!155;UBERON:0001555!1.83e-17!155;UBERON:0007026!1.83e-17!155;UBERON:0004119!5.27e-17!169;UBERON:0000925!5.27e-17!169;UBERON:0006595!5.27e-17!169;UBERON:0000160!1.29e-14!27;UBERON:0000059!4.51e-14!11;UBERON:0000077!3.47e-13!130;UBERON:0004907!1.08e-12!5;UBERON:0001052!2.77e-10!4;UBERON:0001155!6.81e-10!9;UBERON:0001046!3.33e-09!19;UBERON:0005911!6.02e-09!82;UBERON:0003929!2.11e-08!54;UBERON:0001041!1.44e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;4.66e-44;17!UBERON:0005409;1.35e-40;22!UBERON:0000059;8.05e-30;11!UBERON:0004921;5.35e-24;33!UBERON:0004907;7.82e-22;5!UBERON:0001155;4.60e-19;9!UBERON:0001052;1.28e-15;4!UBERON:0002108;4.19e-13;4!UBERON:0002110;8.58e-10;3!UBERON:0001555;2.86e-09;54!UBERON:0001154;2.35e-08;1!UBERON:0001153;2.35e-08;1!UBERON:0009854;2.35e-08;1!UBERON:0001242;2.03e-07;4!UBERON:0001262;2.03e-07;4!UBERON:0004786;2.03e-07;4!UBERON:0004808;2.03e-07;4!UBERON:0001277;2.03e-07;4!UBERON:0001007;3.46e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.86e-44,17;UBERON:0005409,1.21e-35,25;UBERON:0000059,8.23e-30,11;UBERON:0004907,8.04e-22,5;UBERON:0001046,3.08e-21,19;UBERON:0001155,4.77e-19,9;UBERON:0001052,1.31e-15,4;UBERON:0004921,9.87e-15,118;UBERON:0001007,1.83e-14,145;UBERON:0001555,1.83e-14,145;UBERON:0007026,1.83e-14,145;UBERON:0002108,4.19e-13,4;UBERON:0004119,9.51e-13,160;UBERON:0000925,9.51e-13,160;UBERON:0006595,9.51e-13,160;UBERON:0002110,7.85e-10,3;UBERON:0006242,7.85e-10,3;UBERON:0001154,2.35e-08,1;UBERON:0001153,2.35e-08,1;UBERON:0001045,2.35e-08,1;UBERON:0011216,6.72e-08,223;UBERON:0000162,1.11e-07,14;UBERON:0001353,1.11e-07,14;UBERON:0000163,1.11e-07,14;UBERON:0006866,1.11e-07,14;UBERON:0000164,1.11e-07,14;UBERON:0000931,1.11e-07,14;UBERON:0001242,2.14e-07,4;UBERON:0001262,2.14e-07,4;UBERON:0004786,2.14e-07,4;UBERON:0004808,2.14e-07,4;UBERON:0001277,2.14e-07,4;UBERON:0004122,3.55e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19769940212095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,2.51274398001523,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,1.81289174387433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,1.31801321087491,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,184.557655574807,0.503865495708552,0,0,0,0.449341755736634,0,0,2.66337195219721,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,1.08194319871046,477.725726917682,338.527099354279,424.66595072887,0,0,0,0,0,0,0,0.19566461893209,0,0,141.559137776937,0,0.126373159256976,0.300646838828985,0,0,0,0,0,2.84609546029793,0,0,0.195984794828755,0.34823682632161,0,0,0.290268993867255,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,2.96587634930675,17.7165985633663,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0.164831716762333,0.202210631562555,12.1065802263141,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,70.178116392711,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,126.450424567858,163.905683358843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0.0675375846183947,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0,0,0,9.78836336650208,5.41602340668547,0,394.623205945815,3.65263488203798,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,1.21917924982269,0,0,0,0,43.9806191308759,0,0,0.11294608203896,0,0,990.607493473578,30.1612193495461,0,0.735444965261716,0,0,0,0.4226557275834,0,0.187967835959707,0,0,0,0,0,57.6965746714749,0,0,0,0,0,147.598488503797,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.193766729508018,0.496597714366863,0,0,0.404234377916439,0.435433495793923,0.684466602170562,0.0673520530145875,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19769940212095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,2.51274398001523,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,1.81289174387433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,1.31801321087491,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,184.557655574807,0.503865495708552,0,0,0,0.449341755736634,0,0,2.66337195219721,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,1.08194319871046,477.725726917682,338.527099354279,424.66595072887,0,0,0,0,0,0,0,0.19566461893209,0,0,141.559137776937,0,0.126373159256976,0.300646838828985,0,0,0,0,0,2.84609546029793,0,0,0.195984794828755,0.34823682632161,0,0,0.290268993867255,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,2.96587634930675,17.7165985633663,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0.164831716762333,0.202210631562555,12.1065802263141,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,70.178116392711,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,126.450424567858,163.905683358843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0.0675375846183947,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0,0,0,9.78836336650208,5.41602340668547,0,394.623205945815,3.65263488203798,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,1.21917924982269,0,0,0,0,43.9806191308759,0,0,0.11294608203896,0,0,990.607493473578,30.1612193495461,0,0.735444965261716,0,0,0,0.4226557275834,0,0.187967835959707,0,0,0,0,0,57.6965746714749,0,0,0,0,0,147.598488503797,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.193766729508018,0.496597714366863,0,0,0.404234377916439,0.435433495793923,0.684466602170562,0.0673520530145875,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p1@KRT20 | |short_description=p1@KRT20 | ||
}} | }} |
Latest revision as of 04:05, 20 September 2015
Short description: | p1@KRT20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT20_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_NM_019010_5end |
EntrezGene: | KRT20 |
HGNC: | 20412 |
UniProt: | P35900 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.40e-15 | 2 |
intestinal epithelial cell | 2.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.86e-44 | 17 |
gastrointestinal system | 1.21e-35 | 25 |
large intestine | 8.23e-30 | 11 |
lower digestive tract | 8.04e-22 | 5 |
hindgut | 3.08e-21 | 19 |
colon | 4.77e-19 | 9 |
rectum | 1.31e-15 | 4 |
subdivision of digestive tract | 9.87e-15 | 118 |
digestive system | 1.83e-14 | 145 |
digestive tract | 1.83e-14 | 145 |
primitive gut | 1.83e-14 | 145 |
small intestine | 4.19e-13 | 4 |
endoderm-derived structure | 9.51e-13 | 160 |
endoderm | 9.51e-13 | 160 |
presumptive endoderm | 9.51e-13 | 160 |
gallbladder | 7.85e-10 | 3 |
gall bladder primordium | 7.85e-10 | 3 |
vermiform appendix | 2.35e-08 | 1 |
caecum | 2.35e-08 | 1 |
midgut | 2.35e-08 | 1 |
organ system subdivision | 6.72e-08 | 223 |
cloaca | 1.11e-07 | 14 |
anal region | 1.11e-07 | 14 |
embryonic cloaca | 1.11e-07 | 14 |
terminal part of digestive tract | 1.11e-07 | 14 |
primitive urogenital sinus | 1.11e-07 | 14 |
proctodeum | 1.11e-07 | 14 |
intestinal mucosa | 2.14e-07 | 4 |
wall of intestine | 2.14e-07 | 4 |
gastrointestinal system mucosa | 2.14e-07 | 4 |
gastrointestinal system epithelium | 2.14e-07 | 4 |
intestinal epithelium | 2.14e-07 | 4 |
genitourinary system | 3.55e-07 | 15 |