FFCP PHASE1:Hg19::chr1:89829610..89829627,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=163351 | |EntrezGene=163351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25395 | |HGNC=25395 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZN66,F5H7G9 | |UniProt=Q6ZN66,F5H7G9 | ||
|association_with_transcript=0bp_to_ENST00000370456,ENST00000535065_5end | |association_with_transcript=0bp_to_ENST00000370456,ENST00000535065_5end | ||
|cluster_id=chr1:89829610..89829627,+ | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_1_at_GBP6_5end | |description=CAGE_peak_1_at_GBP6_5end | ||
|id=chr1:89829610..89829627,+ | |id=chr1:89829610..89829627,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.61e-19!43;CL:0002251!1.83e-18!21;CL:0000223!7.63e-15!59;CL:0000622!1.25e-11!5;CL:0002621!3.02e-11!3;CL:0002623!3.24e-11!3;CL:0000154!1.07e-09!6;CL:0002159!9.69e-07!13 | |ontology_enrichment_celltype=CL:0002076!1.61e-19!43;CL:0002251!1.83e-18!21;CL:0000223!7.63e-15!59;CL:0000622!1.25e-11!5;CL:0002621!3.02e-11!3;CL:0002623!3.24e-11!3;CL:0000154!1.07e-09!6;CL:0002159!9.69e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002251;4.14e-10;20!CL:0002336;1.06e-09;1!CL:0002261;1.06e-09;1!CL:0002170;1.06e-09;1!CL:0002252;1.99e-09;1!CL:0000622;2.16e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,4.10e-10,20;CL:0002336,9.70e-10,1;CL:0002261,9.70e-10,1;CL:0002170,9.70e-10,1;CL:0002252,1.48e-09,1;CL:0000622,2.23e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;3.74e-10;1 | |||
|ontology_enrichment_disease=DOID:1749!1.16e-08!14 | |ontology_enrichment_disease=DOID:1749!1.16e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;6.31e-10;1!DOID:3149;6.31e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.31e-10,1;DOID:3149,6.31e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000166!1.81e-22!21;UBERON:0000161!2.38e-22!35;UBERON:0000165!3.63e-19!28;UBERON:0000930!3.63e-19!28;UBERON:0000974!7.34e-17!10;UBERON:0001004!8.62e-15!72;UBERON:0001444!2.13e-13!48;UBERON:0003729!4.55e-12!5;UBERON:0003102!2.00e-11!95;UBERON:0001949!3.02e-11!3;UBERON:0004119!3.10e-11!169;UBERON:0000925!3.10e-11!169;UBERON:0006595!3.10e-11!169;UBERON:0000344!1.71e-10!12;UBERON:0001007!7.74e-10!155;UBERON:0001555!7.74e-10!155;UBERON:0007026!7.74e-10!155;UBERON:0001042!4.68e-09!10;UBERON:0009145!4.68e-09!10;UBERON:0003343!8.18e-09!4;UBERON:0004785!8.18e-09!4;UBERON:0000341!1.07e-08!2;UBERON:0003127!1.11e-08!2;UBERON:0000153!1.16e-08!129;UBERON:0007811!1.16e-08!129;UBERON:0003408!1.91e-08!10;UBERON:0006562!3.38e-08!11;UBERON:0000078!7.61e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000341;6.82e-18;2!UBERON:0003127;7.42e-18;2!UBERON:0000165;5.75e-14;28!UBERON:0000974;3.22e-13;6!UBERON:0001723;1.44e-12;3!UBERON:0001033;1.44e-12;3!UBERON:0001043;3.28e-12;3!UBERON:0002372;4.09e-10;1!UBERON:0001961;4.09e-10;1!UBERON:0001744;4.09e-10;1!UBERON:0001042;4.09e-10;1!UBERON:0001735;4.09e-10;1!UBERON:0005795;5.79e-10;1!UBERON:0000997;1.36e-09;1!UBERON:0005056;1.36e-09;1!UBERON:0004176;1.36e-09;1!UBERON:0007811;7.11e-09;52!UBERON:0001555;3.26e-07;54!UBERON:0000161;3.43e-07;19!UBERON:0000166;3.43e-07;19!UBERON:0000344;6.89e-07;20!UBERON:0000153;7.45e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,6.82e-18,2;UBERON:0003127,7.43e-18,2;UBERON:0000153,1.92e-14,62;UBERON:0007811,1.92e-14,62;UBERON:0000165,1.96e-13,29;UBERON:0000930,1.96e-13,29;UBERON:0000166,2.63e-13,22;UBERON:0001723,1.44e-12,3;UBERON:0001033,1.44e-12,3;UBERON:0010056,1.44e-12,3;UBERON:0001043,2.69e-12,3;UBERON:0009143,2.69e-12,3;UBERON:0000033,1.02e-10,56;UBERON:0002372,4.09e-10,1;UBERON:0001961,4.09e-10,1;UBERON:0001744,4.09e-10,1;UBERON:0001735,4.09e-10,1;UBERON:0001444,7.45e-10,49;UBERON:0000997,1.36e-09,1;UBERON:0005056,1.36e-09,1;UBERON:0001042,2.17e-08,10;UBERON:0009145,2.17e-08,10;UBERON:0003102,2.43e-08,99;UBERON:0000974,4.02e-08,10;UBERON:0000161,6.03e-08,36;UBERON:0006562,1.14e-07,11;UBERON:0000344,7.28e-07,20 | |||
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| ||
|short_description=p1@GBP6 | |short_description=p1@GBP6 | ||
}} | }} |
Latest revision as of 17:17, 19 September 2015
Short description: | p1@GBP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GBP6_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_ENST00000370456, ENST00000535065_5end |
EntrezGene: | GBP6 |
HGNC: | 25395 |
UniProt: | Q6ZN66F5H7G9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 4.10e-10 | 20 |
buccal mucosa cell | 9.70e-10 | 1 |
endothelial cell of viscerocranial mucosa | 9.70e-10 | 1 |
keratinized cell of the oral mucosa | 9.70e-10 | 1 |
epithelial cell of esophagus | 1.48e-09 | 1 |
acinar cell | 2.23e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
throat | 6.82e-18 | 2 |
open tracheal system trachea | 7.43e-18 | 2 |
anterior region of body | 1.92e-14 | 62 |
craniocervical region | 1.92e-14 | 62 |
mouth | 1.96e-13 | 29 |
stomodeum | 1.96e-13 | 29 |
oral opening | 2.63e-13 | 22 |
tongue | 1.44e-12 | 3 |
gustatory system | 1.44e-12 | 3 |
future tongue | 1.44e-12 | 3 |
esophagus | 2.69e-12 | 3 |
esophageal region | 2.69e-12 | 3 |
head | 1.02e-10 | 56 |
tonsil | 4.09e-10 | 1 |
mucosa-associated lymphoid tissue | 4.09e-10 | 1 |
lymphoid tissue | 4.09e-10 | 1 |
tonsillar ring | 4.09e-10 | 1 |
subdivision of head | 7.45e-10 | 49 |
mammalian vulva | 1.36e-09 | 1 |
external female genitalia | 1.36e-09 | 1 |
chordate pharynx | 2.17e-08 | 10 |
pharyngeal region of foregut | 2.17e-08 | 10 |
surface structure | 2.43e-08 | 99 |
neck | 4.02e-08 | 10 |
orifice | 6.03e-08 | 36 |
pharynx | 1.14e-07 | 11 |
mucosa | 7.28e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.31e-10 | 1 |
keratoacanthoma | 6.31e-10 | 1 |