FFCP PHASE1:Hg19::chr13:110958124..110958146,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:110958124..110958146,+
|short_description=p11@COL4A2
|description=CAGE_peak_11_at_COL4A2_5end
|association_with_transcript=-12bp_to_ENST00000400163_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1284 | |EntrezGene=1284 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2203 | |HGNC=2203 | ||
|TSSclassifier=strong | |||
|UniProt=A2A352 | |UniProt=A2A352 | ||
|association_with_transcript=-12bp_to_ENST00000400163_5end | |||
|cluster_id=chr13:110958124..110958146,+ | |||
|description=CAGE_peak_11_at_COL4A2_5end | |||
|id=chr13:110958124..110958146,+ | |||
|ontology_enrichment_celltype=CL:0000136!1.01e-08!15;CL:0000055!2.11e-07!180;CL:0000325!3.49e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.32e-16;13!CL:0000708;1.65e-13;3!CL:0000669;1.97e-10;4!CL:0002549;2.63e-10;2!CL:0002575;6.03e-10;2!CL:0002554;6.74e-10;2!CL:0000327;7.30e-07;15!CL:0002521;8.13e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.13e-13,15;CL:0000708,5.03e-13,3;CL:0000669,1.18e-10,4;CL:0002549,2.21e-10,2;CL:0002575,3.63e-10,2;CL:0002554,7.39e-10,2;CL:0002521,5.33e-07,3;CL:0000327,9.75e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!3.03e-09!113;UBERON:0002417!6.04e-09!61;UBERON:0000916!6.04e-09!61;UBERON:0004535!1.45e-08!110;UBERON:0002049!1.87e-08!79;UBERON:0007798!1.87e-08!79;UBERON:0003887!2.48e-08!21;UBERON:0003914!1.76e-07!118;UBERON:0000080!2.43e-07!18;UBERON:0002120!2.43e-07!18;UBERON:0004875!2.43e-07!18;UBERON:0005721!2.43e-07!18;UBERON:0005754!2.43e-07!18;UBERON:0007297!2.43e-07!18;UBERON:0000353!7.52e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0003210;1.65e-13;3!UBERON:0002331;3.84e-11;10!UBERON:0005629;2.63e-10;2!UBERON:0005358;2.63e-10;2!UBERON:0001886;2.63e-10;2!UBERON:0004086;2.63e-10;2!UBERON:0005282;2.63e-10;2!UBERON:0005281;2.63e-10;2!UBERON:0001473;8.42e-09;8!UBERON:0004536;8.42e-09;8!UBERON:0006558;8.42e-09;8!UBERON:0005284;1.23e-08;5!UBERON:0002465;4.75e-07;10!UBERON:0002190;8.13e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,5.03e-13,3;UBERON:0002331,4.20e-11,10;UBERON:0000358,4.20e-11,10;UBERON:0000307,4.20e-11,10;UBERON:0000091,4.20e-11,10;UBERON:0000087,4.20e-11,10;UBERON:0007010,4.20e-11,10;UBERON:0007806,4.20e-11,10;UBERON:0008780,4.20e-11,10;UBERON:0005728,4.20e-11,10;UBERON:0005629,2.21e-10,2;UBERON:0005358,2.21e-10,2;UBERON:0001886,2.21e-10,2;UBERON:0004086,2.21e-10,2;UBERON:0005282,2.21e-10,2;UBERON:0005281,2.21e-10,2;UBERON:0005284,9.12e-09,5;UBERON:0001473,9.18e-09,8;UBERON:0004536,9.18e-09,8;UBERON:0006558,9.18e-09,8;UBERON:0004535,1.61e-07,109;UBERON:0001009,3.20e-07,112;UBERON:0002465,5.09e-07,10;UBERON:0002190,5.33e-07,3 | |||
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|short_description=p11@COL4A2 | |||
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Latest revision as of 12:38, 16 September 2015
Short description: | p11@COL4A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_COL4A2_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000400163_5end |
EntrezGene: | COL4A2 |
HGNC: | 2203 |
UniProt: | A2A352 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.13e-13 | 15 |
leptomeningeal cell | 5.03e-13 | 3 |
pericyte cell | 1.18e-10 | 4 |
fibroblast of choroid plexus | 2.21e-10 | 2 |
central nervous system pericyte | 3.63e-10 | 2 |
fibroblast of lymphatic vessel | 7.39e-10 | 2 |
subcutaneous fat cell | 5.33e-07 | 3 |
extracellular matrix secreting cell | 9.75e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 5.03e-13 | 3 |
umbilical cord | 4.20e-11 | 10 |
blastocyst | 4.20e-11 | 10 |
blastula | 4.20e-11 | 10 |
bilaminar disc | 4.20e-11 | 10 |
inner cell mass | 4.20e-11 | 10 |
cleaving embryo | 4.20e-11 | 10 |
connecting stalk | 4.20e-11 | 10 |
inner cell mass derived epiblast | 4.20e-11 | 10 |
extraembryonic mesoderm | 4.20e-11 | 10 |
vascular plexus | 2.21e-10 | 2 |
ventricle of nervous system | 2.21e-10 | 2 |
choroid plexus | 2.21e-10 | 2 |
brain ventricle | 2.21e-10 | 2 |
ventricular system of brain | 2.21e-10 | 2 |
ventricular system of central nervous system | 2.21e-10 | 2 |
brain vasculature | 9.12e-09 | 5 |
lymphatic vessel | 9.18e-09 | 8 |
lymph vasculature | 9.18e-09 | 8 |
lymphatic part of lymphoid system | 9.18e-09 | 8 |
cardiovascular system | 1.61e-07 | 109 |
circulatory system | 3.20e-07 | 112 |
lymphoid system | 5.09e-07 | 10 |
subcutaneous adipose tissue | 5.33e-07 | 3 |