FFCP PHASE1:Hg19::chr13:20934450..20934456,+: Difference between revisions
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|id=chr13:20934450..20934456,+
|short_description=p@chr13:20934450..20934456,+
|description=CAGE_peak_at_chr13:20934450..20934456,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:20934450..20934456,+ | |||
|coexpression_cluster_id=C1702 | |||
|description=CAGE_peak_at_chr13:20934450..20934456,+ | |||
|id=chr13:20934450..20934456,+ | |||
|ontology_enrichment_celltype=CL:0000244!5.18e-21!4;CL:0000731!5.18e-21!4;CL:0000575!1.00e-18!2;CL:0002368!1.41e-16!13;CL:0000068!1.59e-12!3;CL:0000069!1.59e-12!3;CL:0000307!1.59e-12!3;CL:0000377!1.59e-12!3;CL:0002076!5.79e-12!43;CL:0002159!3.41e-11!13;CL:0002202!2.35e-09!9;CL:0002632!2.35e-09!9;CL:0000223!1.93e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000244;2.87e-50;4!CL:0000731;2.87e-50;4!CL:0000575;1.91e-44;2!CL:0002159;1.91e-25;14!CL:0000317;1.85e-12;2!CL:1000448;1.85e-12;2!CL:0002308;1.85e-12;2!CL:0002140;1.85e-12;2!CL:0000362;8.57e-11;9!CL:0002077;3.53e-10;34!CL:0002328;1.26e-08;3!CL:0002231;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.23e-50,4;CL:0000731,2.23e-50,4;CL:0000575,3.72e-44,2;CL:0002159,2.54e-25,14;CL:0000317,1.85e-12,2;CL:1000448,1.85e-12,2;CL:0002308,1.85e-12,2;CL:0002140,1.85e-12,2;CL:0000362,9.23e-11,9;CL:0002077,1.05e-10,34;CL:0002328,1.04e-08,3;CL:0002231,1.21e-08,3;CL:0000066,8.89e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!6.22e-17!5;UBERON:0005910!3.32e-14!6;UBERON:0000964!7.91e-10!4;UBERON:0004348!7.91e-10!4;UBERON:0005427!7.91e-10!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.08e-40;5!UBERON:0005910;7.94e-34;6!UBERON:0000964;8.02e-23;4!UBERON:0010409;8.02e-23;4!UBERON:0000486;2.53e-17;12!UBERON:0002419;1.85e-12;2!UBERON:0007771;1.85e-12;2!UBERON:0003297;1.85e-12;2!UBERON:0001821;1.85e-12;2!UBERON:0003487;1.85e-12;2!UBERON:0001820;1.85e-12;2!UBERON:0010313;9.65e-10;10!UBERON:0005911;1.05e-08;36!UBERON:0004815;1.26e-08;3!UBERON:0002031;1.26e-08;3!UBERON:0006554;2.58e-07;30!UBERON:0001008;2.58e-07;30!UBERON:0001801;3.23e-07;14!UBERON:0001003;7.75e-07;15!UBERON:0007376;7.75e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.70e-40,5;UBERON:0005910,6.72e-34,6;UBERON:0000964,1.12e-22,4;UBERON:0010409,1.12e-22,4;UBERON:0004348,1.12e-22,4;UBERON:0005427,1.12e-22,4;UBERON:0002419,1.85e-12,2;UBERON:0007771,1.85e-12,2;UBERON:0003297,1.85e-12,2;UBERON:0001821,1.85e-12,2;UBERON:0003487,1.85e-12,2;UBERON:0001820,1.85e-12,2;UBERON:0005089,1.85e-12,2;UBERON:0005088,1.85e-12,2;UBERON:0010313,1.10e-09,10;UBERON:0002342,1.10e-09,10;UBERON:0005062,1.10e-09,10;UBERON:0004815,1.04e-08,3;UBERON:0002031,1.04e-08,3;UBERON:0006554,6.05e-08,47;UBERON:0005157,7.54e-08,47;UBERON:0001008,8.73e-08,48;UBERON:0001801,3.55e-07,14;UBERON:0005085,5.19e-07,31;UBERON:0005911,6.42e-07,82;UBERON:0001003,8.09e-07,15;UBERON:0007376,8.09e-07,15;UBERON:0007383,8.09e-07,15 | |||
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|short_description=p@chr13:20934450..20934456,+ | |||
}} | }} |
Latest revision as of 14:59, 24 July 2015
Short description: | p@chr13:20934450..20934456, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:20934450..20934456, + |
Coexpression cluster: | C1702_Urothelial_Bronchial_Corneal_Sebocyte_Tracheal_Esophageal_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.23e-50 | 4 |
urothelial cell | 2.23e-50 | 4 |
corneal epithelial cell | 3.72e-44 | 2 |
general ecto-epithelial cell | 2.54e-25 | 14 |
sebum secreting cell | 1.85e-12 | 2 |
epithelial cell of sweat gland | 1.85e-12 | 2 |
epithelial cell of skin gland | 1.85e-12 | 2 |
acinar cell of sebaceous gland | 1.85e-12 | 2 |
epidermal cell | 9.23e-11 | 9 |
ecto-epithelial cell | 1.05e-10 | 34 |
bronchial epithelial cell | 1.04e-08 | 3 |
epithelial cell of prostate | 1.21e-08 | 3 |
epithelial cell | 8.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.70e-40 | 5 |
transitional epithelium | 6.72e-34 | 6 |
cornea | 1.12e-22 | 4 |
eye surface | 1.12e-22 | 4 |
optic eminence | 1.12e-22 | 4 |
corneal primordium | 1.12e-22 | 4 |
skin gland | 1.85e-12 | 2 |
epidermis gland | 1.85e-12 | 2 |
gland of integumental system | 1.85e-12 | 2 |
sebaceous gland | 1.85e-12 | 2 |
skin sebaceous gland | 1.85e-12 | 2 |
sweat gland | 1.85e-12 | 2 |
sweat gland placode | 1.85e-12 | 2 |
sebaceous gland placode | 1.85e-12 | 2 |
neural crest-derived structure | 1.10e-09 | 10 |
neural crest | 1.10e-09 | 10 |
neural fold | 1.10e-09 | 10 |
lower respiratory tract epithelium | 1.04e-08 | 3 |
epithelium of bronchus | 1.04e-08 | 3 |
urinary system structure | 6.05e-08 | 47 |
epithelial fold | 7.54e-08 | 47 |
renal system | 8.73e-08 | 48 |
anterior segment of eyeball | 3.55e-07 | 14 |
ectodermal placode | 5.19e-07 | 31 |
endo-epithelium | 6.42e-07 | 82 |
skin epidermis | 8.09e-07 | 15 |
outer epithelium | 8.09e-07 | 15 |
enveloping layer of ectoderm | 8.09e-07 | 15 |