FFCP PHASE1:Hg19::chr20:57594433..57594447,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81027 | |EntrezGene=81027 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16257 | |HGNC=16257 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H4B7 | |UniProt=Q9H4B7 | ||
|association_with_transcript=124bp_to_ENST00000217133,NM_030773,uc002yak.2_5end | |association_with_transcript=124bp_to_ENST00000217133,NM_030773,uc002yak.2_5end | ||
|cluster_id=chr20:57594433..57594447,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_2_at_TUBB1_5end | |description=CAGE_peak_2_at_TUBB1_5end | ||
|id=chr20:57594433..57594447,+ | |id=chr20:57594433..57594447,+ | ||
|ontology_enrichment_celltype=CL:0000094!2.39e-18!8;CL:0000037!1.08e-16!172;CL:0000566!1.08e-16!172;CL:0000988!4.56e-15!182;CL:0002032!8.55e-15!165;CL:0000837!8.55e-15!165;CL:0000763!9.90e-15!112;CL:0000049!9.90e-15!112;CL:0000081!7.36e-13!11;CL:0000738!1.79e-12!140;CL:0000766!1.05e-11!76;CL:0002057!1.37e-08!42;CL:0002087!2.04e-08!119;CL:0000842!4.81e-08!3;CL:0000775!6.32e-08!3;CL:0000767!7.57e-08!3;CL:0000860!9.09e-08!45;CL:0002031!5.30e-07!124 | |ontology_enrichment_celltype=CL:0000094!2.39e-18!8;CL:0000037!1.08e-16!172;CL:0000566!1.08e-16!172;CL:0000988!4.56e-15!182;CL:0002032!8.55e-15!165;CL:0000837!8.55e-15!165;CL:0000763!9.90e-15!112;CL:0000049!9.90e-15!112;CL:0000081!7.36e-13!11;CL:0000738!1.79e-12!140;CL:0000766!1.05e-11!76;CL:0002057!1.37e-08!42;CL:0002087!2.04e-08!119;CL:0000842!4.81e-08!3;CL:0000775!6.32e-08!3;CL:0000767!7.57e-08!3;CL:0000860!9.09e-08!45;CL:0002031!5.30e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000094;2.30e-40;8!CL:0000081;4.85e-29;11!CL:0000226;1.56e-16;3!CL:0000842;1.56e-16;3!CL:0000775;3.69e-16;3!CL:0000767;4.32e-16;3!CL:0000771;1.18e-11;2!CL:0000764;3.12e-11;2!CL:0000558;3.12e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,1.82e-40,8;CL:0000081,4.10e-29,11;CL:0000226,1.52e-16,3;CL:0000842,1.52e-16,3;CL:0000775,2.85e-16,3;CL:0000767,4.32e-16,3;CL:0000771,1.21e-11,2;CL:0000764,3.84e-11,2;CL:0000765,3.84e-11,2;CL:0000050,3.84e-11,2;CL:0000038,3.84e-11,2;CL:0000558,3.84e-11,2;CL:0000547,3.84e-11,2;CL:0000549,3.84e-11,2;CL:0000550,3.84e-11,2;CL:0000552,3.84e-11,2;CL:0000037,1.12e-08,168;CL:0000763,1.79e-08,108;CL:0000049,1.79e-08,108;CL:0000988,5.13e-08,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!2.78e-09!8 | |ontology_enrichment_disease=DOID:1036!2.78e-09!8 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!9.18e-22!15;UBERON:0000179!9.18e-22!15;UBERON:0000463!9.18e-22!15;UBERON:0002390!4.06e-14!102;UBERON:0003061!4.06e-14!102;UBERON:0002193!4.47e-12!112;UBERON:0007023!9.03e-12!115 | |ontology_enrichment_uberon=UBERON:0000178!9.18e-22!15;UBERON:0000179!9.18e-22!15;UBERON:0000463!9.18e-22!15;UBERON:0002390!4.06e-14!102;UBERON:0003061!4.06e-14!102;UBERON:0002193!4.47e-12!112;UBERON:0007023!9.03e-12!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.81e-50;15!UBERON:0000179;4.81e-50;15!UBERON:0000463;4.81e-50;15!UBERON:0002390;1.13e-28;32!UBERON:0002193;2.02e-15;42!UBERON:0002106;9.08e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.71e-50,15;UBERON:0000179,4.71e-50,15;UBERON:0000463,4.71e-50,15;UBERON:0002390,3.04e-10,98;UBERON:0003061,3.04e-10,98;UBERON:0002193,5.43e-09,108;UBERON:0002106,8.19e-08,3;UBERON:0004854,8.19e-08,3;UBERON:0009034,8.19e-08,3;UBERON:0002095,8.19e-08,3;UBERON:0004782,8.19e-08,3;UBERON:0003281,8.19e-08,3;UBERON:0009664,8.19e-08,3;UBERON:0002296,8.19e-08,3;UBERON:0005602,8.19e-08,3;UBERON:0001179,8.19e-08,3;UBERON:0006293,8.19e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0141997517693,4.60595277716655,1.23852898652861,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0.639337125799041,0.659702600373432,0,0.426224750532694,0.290209238628584,0,1.24564449799115,0.502497330513487,0.521482918420201,0.217188844705117,0,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,3.4485146397269,0.661044872784862,0.954053754535364,0.569212969109448,0,0,13.2171328579026,5.04457706683382,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,2.49861453104692,0.710331756132051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74503511973591,2.99161459204025,14.5045429702612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.9248652538986,8.84428223356329,4.48255742774466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28889814968902,3.13722541229881,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.282431402330337,0,0,0,0,162.383234954294,129.988325214204,116.208026183529,50.7433681725091,44.427125493309,125.155349060194,123.667199127528,129.279403735966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2454681417118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,83.8190823214289,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0.498635045700469,0.225595660617181,1.37243774022418,1.34257269580674,4.17458211993207,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,2.00854311697685,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,2.65013777824443,0.258565912723101,0.13223260174269,0,0,1.28144895081234,0.943225830597996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66537280121429,3.48072595057317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0141997517693,4.60595277716655,1.23852898652861,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0.639337125799041,0.659702600373432,0,0.426224750532694,0.290209238628584,0,1.24564449799115,0.502497330513487,0.521482918420201,0.217188844705117,0,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,3.4485146397269,0.661044872784862,0.954053754535364,0.569212969109448,0,0,13.2171328579026,5.04457706683382,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,2.49861453104692,0.710331756132051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74503511973591,2.99161459204025,14.5045429702612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.9248652538986,8.84428223356329,4.48255742774466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28889814968902,3.13722541229881,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.282431402330337,0,0,0,0,162.383234954294,129.988325214204,116.208026183529,50.7433681725091,44.427125493309,125.155349060194,123.667199127528,129.279403735966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2454681417118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,83.8190823214289,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0.498635045700469,0.225595660617181,1.37243774022418,1.34257269580674,4.17458211993207,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,2.00854311697685,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,2.65013777824443,0.258565912723101,0.13223260174269,0,0,1.28144895081234,0.943225830597996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,2.3196288626764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66537280121429,3.48072595057317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@TUBB1 | |short_description=p2@TUBB1 | ||
}} | }} |
Latest revision as of 07:18, 17 September 2015
Short description: | p2@TUBB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TUBB1_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 124bp_to_ENST00000217133, NM_030773, uc002yak.2_5end |
EntrezGene: | TUBB1 |
HGNC: | 16257 |
UniProt: | Q9H4B7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 1.82e-40 | 8 |
blood cell | 4.10e-29 | 11 |
single nucleate cell | 1.52e-16 | 3 |
mononuclear cell | 1.52e-16 | 3 |
neutrophil | 2.85e-16 | 3 |
basophil | 4.32e-16 | 3 |
eosinophil | 1.21e-11 | 2 |
erythroid lineage cell | 3.84e-11 | 2 |
erythroblast | 3.84e-11 | 2 |
megakaryocyte-erythroid progenitor cell | 3.84e-11 | 2 |
erythroid progenitor cell | 3.84e-11 | 2 |
reticulocyte | 3.84e-11 | 2 |
proerythroblast | 3.84e-11 | 2 |
basophilic erythroblast | 3.84e-11 | 2 |
polychromatophilic erythroblast | 3.84e-11 | 2 |
orthochromatic erythroblast | 3.84e-11 | 2 |
hematopoietic stem cell | 1.12e-08 | 168 |
myeloid cell | 1.79e-08 | 108 |
common myeloid progenitor | 1.79e-08 | 108 |
hematopoietic cell | 5.13e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 4.71e-50 | 15 |
haemolymphatic fluid | 4.71e-50 | 15 |
organism substance | 4.71e-50 | 15 |
hematopoietic system | 3.04e-10 | 98 |
blood island | 3.04e-10 | 98 |
hemolymphoid system | 5.43e-09 | 108 |
spleen | 8.19e-08 | 3 |
gastrointestinal system mesentery | 8.19e-08 | 3 |
stomach region | 8.19e-08 | 3 |
mesentery | 8.19e-08 | 3 |
gastrointestinal system serosa | 8.19e-08 | 3 |
mesentery of stomach | 8.19e-08 | 3 |
gut mesentery | 8.19e-08 | 3 |
dorsal mesentery | 8.19e-08 | 3 |
dorsal mesogastrium | 8.19e-08 | 3 |
peritoneal cavity | 8.19e-08 | 3 |
spleen primordium | 8.19e-08 | 3 |