FFCP PHASE1:Hg19::chr13:95131926..95131944,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:95131926..95131944,-
|short_description=p1@DCT
|description=CAGE_peak_1_at_DCT_5end
|association_with_transcript=0bp_to_ENST00000446125,NM_001129889,NM_00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1638 | |EntrezGene=1638 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2709 | |HGNC=2709 | ||
|TSSclassifier=strong | |||
|UniProt=Q09GT4,P40126 | |UniProt=Q09GT4,P40126 | ||
|association_with_transcript=0bp_to_ENST00000446125,NM_001129889,NM_001922,uc001vlv.3,uc010afh.2_5end | |||
|cluster_id=chr13:95131926..95131944,- | |||
|coexpression_cluster_id=C177 | |||
|description=CAGE_peak_1_at_DCT_5end | |||
|id=chr13:95131926..95131944,- | |||
|ontology_enrichment_celltype=CL:0000147!8.91e-27!14;CL:0000148!4.23e-22!10;CL:0000541!4.23e-22!10;CL:0000710!9.87e-15!20;CL:0000075!3.45e-12!27;CL:0000149!3.82e-11!4;CL:0000325!1.25e-10!39;CL:0002567!1.73e-09!3;CL:0002077!1.82e-09!33;CL:0000453!5.20e-09!5;CL:0002586!1.12e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.53e-51;14!CL:0000148;2.97e-49;10!CL:0000710;2.16e-29;20!CL:0000075;2.58e-21;27!CL:0002567;1.08e-19;3!CL:0002077;3.93e-17;34!CL:0000149;3.95e-14;4!CL:0000453;1.12e-11;5!CL:0000097;3.24e-11;5!CL:0002586;6.22e-09;3!CL:0002566;8.00e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.53e-51,14;CL:0000148,2.65e-49,10;CL:0000541,2.65e-49,10;CL:0000710,1.94e-29,20;CL:0000075,2.39e-21,27;CL:0002077,5.73e-20,34;CL:0002567,1.08e-19,3;CL:0000333,1.54e-15,41;CL:0000149,4.52e-14,4;CL:0000133,2.25e-12,59;CL:0000453,1.12e-11,5;CL:0000221,1.55e-11,72;CL:0000097,3.18e-11,5;CL:0002028,3.18e-11,5;CL:0002586,6.74e-09,3;CL:0002566,8.00e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.33e-09;3!UBERON:0006241;1.07e-08;3!UBERON:0003057;1.07e-08;3!UBERON:0004874;1.83e-07;1 | |||
|ontology_enrichment_disease=DOID:1909!6.84e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;9.14e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,9.14e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0003075!2.46e-25!86;UBERON:0007284!2.46e-25!86;UBERON:0002346!8.42e-24!90;UBERON:0005743!1.83e-23!86;UBERON:0001049!2.82e-23!57;UBERON:0005068!2.82e-23!57;UBERON:0006241!2.82e-23!57;UBERON:0007135!2.82e-23!57;UBERON:0000073!1.97e-20!94;UBERON:0001016!1.97e-20!94;UBERON:0003056!6.91e-20!61;UBERON:0001017!3.40e-18!82;UBERON:0007023!8.46e-18!115;UBERON:0002616!1.11e-16!59;UBERON:0000955!3.24e-16!69;UBERON:0006238!3.24e-16!69;UBERON:0002780!8.46e-16!41;UBERON:0001890!8.46e-16!41;UBERON:0006240!8.46e-16!41;UBERON:0004121!1.13e-15!169;UBERON:0001893!1.59e-15!34;UBERON:0003080!2.55e-15!42;UBERON:0000924!4.54e-15!173;UBERON:0006601!4.54e-15!173;UBERON:0002791!4.01e-14!33;UBERON:0000966!8.08e-14!5;UBERON:0005388!8.08e-14!5;UBERON:0001802!8.08e-14!5;UBERON:0000153!1.01e-13!129;UBERON:0007811!1.01e-13!129;UBERON:0000033!1.12e-13!123;UBERON:0001869!1.28e-12!32;UBERON:0002020!9.27e-12!34;UBERON:0003528!9.27e-12!34;UBERON:0003076!1.94e-09!15;UBERON:0003057!1.94e-09!15;UBERON:0002420!2.07e-09!9;UBERON:0007245!2.07e-09!9;UBERON:0010009!2.07e-09!9;UBERON:0010011!2.07e-09!9;UBERON:0000454!2.07e-09!9;UBERON:0002240!1.09e-08!3;UBERON:0001781!1.12e-08!3;UBERON:0001782!1.12e-08!3;UBERON:0005424!1.12e-08!3;UBERON:0009663!1.17e-08!7;UBERON:0002619!2.49e-08!22;UBERON:0001896!4.01e-08!3;UBERON:0005290!4.01e-08!3;UBERON:0010096!4.01e-08!3;UBERON:0000020!1.15e-07!23;UBERON:0002298!1.53e-07!8;UBERON:0001950!1.59e-07!20;UBERON:0001871!1.87e-07!7;UBERON:0001032!2.85e-07!24;UBERON:0004456!2.85e-07!24;UBERON:0000970!2.87e-07!20;UBERON:0000956!3.74e-07!25;UBERON:0000203!3.74e-07!25;UBERON:0002104!7.47e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;7.20e-20;5!UBERON:0005388;7.20e-20;5!UBERON:0001802;7.20e-20;5!UBERON:0001781;6.22e-09;3!UBERON:0001782;6.22e-09;3!UBERON:0002240;1.07e-08;3!UBERON:0005174;1.07e-08;3!UBERON:0001137;1.07e-08;3!UBERON:0007029;1.33e-07;1!UBERON:0000970;1.57e-07;20!UBERON:0000989;1.83e-07;1!UBERON:0008811;1.83e-07;1!UBERON:0002104;3.69e-07;21!UBERON:0001003;9.36e-07;15!UBERON:0007376;9.36e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.48e-16,6;UBERON:0005388,1.48e-16,6;UBERON:0001802,1.48e-16,6;UBERON:0001782,6.74e-09,3;UBERON:0005424,6.74e-09,3;UBERON:0002240,1.13e-08,3;UBERON:0005174,1.13e-08,3;UBERON:0001137,1.13e-08,3;UBERON:0007029,1.33e-07,1;UBERON:0000989,1.83e-07,1;UBERON:0008811,1.83e-07,1;UBERON:0006258,1.83e-07,1;UBERON:0005876,1.83e-07,1;UBERON:0004874,1.83e-07,1;UBERON:0000970,3.79e-07,21;UBERON:0002104,3.79e-07,21;UBERON:0001781,7.06e-07,4;UBERON:0001003,9.58e-07,15;UBERON:0007376,9.58e-07,15;UBERON:0007383,9.58e-07,15 | |||
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| ||
|short_description=p1@DCT | |||
}} | }} |
Latest revision as of 05:23, 18 September 2015
Short description: | p1@DCT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DCT_5end |
Coexpression cluster: | C177_melanoma_Melanocyte_mesenchymal_retina_Mallassezderived_Gingival_squamous |
Association with transcript: | 0bp_to_ENST00000446125, NM_001129889, NM_001922, uc001vlv.3, uc010afh.2_5end |
EntrezGene: | DCT |
HGNC: | 2709 |
UniProt: | Q09GT4P40126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.53e-51 | 14 |
melanocyte | 2.65e-49 | 10 |
melanoblast | 2.65e-49 | 10 |
neurecto-epithelial cell | 1.94e-29 | 20 |
columnar/cuboidal epithelial cell | 2.39e-21 | 27 |
ecto-epithelial cell | 5.73e-20 | 34 |
light melanocyte | 1.08e-19 | 3 |
migratory neural crest cell | 1.54e-15 | 41 |
visual pigment cell | 4.52e-14 | 4 |
neurectodermal cell | 2.25e-12 | 59 |
Langerhans cell | 1.12e-11 | 5 |
ectodermal cell | 1.55e-11 | 72 |
mast cell | 3.18e-11 | 5 |
basophil mast progenitor cell | 3.18e-11 | 5 |
retinal pigment epithelial cell | 6.74e-09 | 3 |
dark melanocyte | 8.00e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
retina | 1.48e-16 | 6 |
photoreceptor array | 1.48e-16 | 6 |
posterior segment of eyeball | 1.48e-16 | 6 |
pigmented layer of retina | 6.74e-09 | 3 |
presumptive retinal pigmented epithelium | 6.74e-09 | 3 |
spinal cord | 1.13e-08 | 3 |
dorsal region element | 1.13e-08 | 3 |
dorsum | 1.13e-08 | 3 |
surface | 1.33e-07 | 1 |
penis | 1.83e-07 | 1 |
intromittent organ | 1.83e-07 | 1 |
lateral plate mesenchyme | 1.83e-07 | 1 |
undifferentiated genital tubercle | 1.83e-07 | 1 |
somatopleure | 1.83e-07 | 1 |
eye | 3.79e-07 | 21 |
visual system | 3.79e-07 | 21 |
layer of retina | 7.06e-07 | 4 |
skin epidermis | 9.58e-07 | 15 |
outer epithelium | 9.58e-07 | 15 |
enveloping layer of ectoderm | 9.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.14e-14 | 2 |