FFCP PHASE1:Hg19::chr2:224462615..224462628,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:224462615..224462628,- | |||
|coexpression_cluster_id=C708 | |||
|description=CAGE_peak_at_chr2:224462615..224462628,- | |description=CAGE_peak_at_chr2:224462615..224462628,- | ||
|id=chr2:224462615..224462628,- | |id=chr2:224462615..224462628,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000167;1.25e-13;1!CL:0000164;1.25e-13;1!CL:0000502;1.25e-13;1!CL:0000172;1.25e-13;1!CL:0002553;1.25e-13;1!CL:0000173;1.25e-13;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,8.58e-14,1;CL:0000164,8.58e-14,1;CL:0000502,8.58e-14,1;CL:0000172,8.58e-14,1;CL:0000173,8.58e-14,1;CL:0002351,8.58e-14,1;CL:0002553,9.73e-14,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.25e-13;1!UBERON:0010122;1.87e-07;2 | |||
|ontology_enrichment_disease=DOID:171!2.08e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;2.95e-20;10!DOID:4430;1.25e-13;1!DOID:3095;2.34e-09;22!DOID:2994;2.34e-09;22!DOID:3119;1.06e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.11e-20,10;DOID:4430,8.58e-14,1;DOID:3095,2.39e-09,22;DOID:2994,2.39e-09,22;DOID:3119,9.56e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.92e-36!82;UBERON:0000073!3.62e-35!94;UBERON:0001016!3.62e-35!94;UBERON:0001049!3.04e-34!57;UBERON:0005068!3.04e-34!57;UBERON:0006241!3.04e-34!57;UBERON:0007135!3.04e-34!57;UBERON:0005743!3.26e-34!86;UBERON:0002616!1.11e-30!59;UBERON:0000955!6.77e-30!69;UBERON:0006238!6.77e-30!69;UBERON:0002346!4.75e-29!90;UBERON:0002780!4.29e-28!41;UBERON:0001890!4.29e-28!41;UBERON:0006240!4.29e-28!41;UBERON:0003080!2.91e-27!42;UBERON:0003075!3.09e-25!86;UBERON:0007284!3.09e-25!86;UBERON:0001869!3.59e-23!32;UBERON:0002020!8.90e-22!34;UBERON:0003528!8.90e-22!34;UBERON:0001893!1.66e-21!34;UBERON:0000924!1.36e-20!173;UBERON:0006601!1.36e-20!173;UBERON:0002791!4.34e-20!33;UBERON:0001950!3.30e-19!20;UBERON:0003056!4.91e-18!61;UBERON:0004121!7.32e-18!169;UBERON:0002619!3.40e-17!22;UBERON:0000033!1.77e-15!123;UBERON:0000956!9.17e-15!25;UBERON:0000203!9.17e-15!25;UBERON:0000153!2.69e-14!129;UBERON:0007811!2.69e-14!129;UBERON:0007023!2.60e-13!115;UBERON:0001872!9.10e-11!5;UBERON:0000369!1.08e-09!4;UBERON:0002435!1.08e-09!4;UBERON:0000204!1.08e-09!4;UBERON:0010082!1.08e-09!4;UBERON:0000200!7.77e-09!6;UBERON:0002308!1.13e-08!9;UBERON:0000125!1.13e-08!9;UBERON:0005383!2.71e-08!3;UBERON:0005382!2.71e-08!3;UBERON:0001894!2.81e-08!7;UBERON:0006222!2.81e-08!7;UBERON:0003076!3.79e-08!15;UBERON:0003057!3.79e-08!15;UBERON:0009663!6.50e-08!7;UBERON:0002771!1.97e-07!3;UBERON:0000025!3.09e-07!194;UBERON:0002021!9.91e-07!5 | |ontology_enrichment_uberon=UBERON:0001017!1.92e-36!82;UBERON:0000073!3.62e-35!94;UBERON:0001016!3.62e-35!94;UBERON:0001049!3.04e-34!57;UBERON:0005068!3.04e-34!57;UBERON:0006241!3.04e-34!57;UBERON:0007135!3.04e-34!57;UBERON:0005743!3.26e-34!86;UBERON:0002616!1.11e-30!59;UBERON:0000955!6.77e-30!69;UBERON:0006238!6.77e-30!69;UBERON:0002346!4.75e-29!90;UBERON:0002780!4.29e-28!41;UBERON:0001890!4.29e-28!41;UBERON:0006240!4.29e-28!41;UBERON:0003080!2.91e-27!42;UBERON:0003075!3.09e-25!86;UBERON:0007284!3.09e-25!86;UBERON:0001869!3.59e-23!32;UBERON:0002020!8.90e-22!34;UBERON:0003528!8.90e-22!34;UBERON:0001893!1.66e-21!34;UBERON:0000924!1.36e-20!173;UBERON:0006601!1.36e-20!173;UBERON:0002791!4.34e-20!33;UBERON:0001950!3.30e-19!20;UBERON:0003056!4.91e-18!61;UBERON:0004121!7.32e-18!169;UBERON:0002619!3.40e-17!22;UBERON:0000033!1.77e-15!123;UBERON:0000956!9.17e-15!25;UBERON:0000203!9.17e-15!25;UBERON:0000153!2.69e-14!129;UBERON:0007811!2.69e-14!129;UBERON:0007023!2.60e-13!115;UBERON:0001872!9.10e-11!5;UBERON:0000369!1.08e-09!4;UBERON:0002435!1.08e-09!4;UBERON:0000204!1.08e-09!4;UBERON:0010082!1.08e-09!4;UBERON:0000200!7.77e-09!6;UBERON:0002308!1.13e-08!9;UBERON:0000125!1.13e-08!9;UBERON:0005383!2.71e-08!3;UBERON:0005382!2.71e-08!3;UBERON:0001894!2.81e-08!7;UBERON:0006222!2.81e-08!7;UBERON:0003076!3.79e-08!15;UBERON:0003057!3.79e-08!15;UBERON:0009663!6.50e-08!7;UBERON:0002771!1.97e-07!3;UBERON:0000025!3.09e-07!194;UBERON:0002021!9.91e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.73e-29;4!UBERON:0000923;7.73e-29;4!UBERON:0010316;7.73e-29;4!UBERON:0005291;7.73e-29;4!UBERON:0002050;3.22e-23;5!UBERON:0005423;3.22e-23;5!UBERON:0005383;1.64e-17;3!UBERON:0005382;1.64e-17;3!UBERON:0001874;6.65e-14;1!UBERON:0000369;2.21e-13;4!UBERON:0002435;2.21e-13;4!UBERON:0000204;2.21e-13;4!UBERON:0000125;5.64e-13;9!UBERON:0002308;5.64e-13;9!UBERON:0003528;2.59e-08;34!UBERON:0002020;2.59e-08;34!UBERON:0009663;4.92e-08;7!UBERON:0000007;1.05e-07;2!UBERON:0002771;1.27e-07;2!UBERON:0000073;1.58e-07;53!UBERON:0002616;1.58e-07;53!UBERON:0001873;1.87e-07;2!UBERON:0002148;1.87e-07;2!UBERON:0006331;1.87e-07;2!UBERON:0009662;1.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,1.94e-17,3;UBERON:0005382,1.94e-17,3;UBERON:0001874,6.65e-14,1;UBERON:0000369,2.51e-13,4;UBERON:0002435,2.51e-13,4;UBERON:0000204,2.51e-13,4;UBERON:0010082,2.51e-13,4;UBERON:0002346,4.52e-13,86;UBERON:0000125,6.93e-13,9;UBERON:0002308,6.93e-13,9;UBERON:0000073,1.14e-10,53;UBERON:0002616,1.14e-10,53;UBERON:0001049,4.45e-10,56;UBERON:0005068,4.45e-10,56;UBERON:0006241,4.45e-10,56;UBERON:0007135,4.45e-10,56;UBERON:0003528,8.83e-09,34;UBERON:0002020,8.83e-09,34;UBERON:0000955,4.29e-08,68;UBERON:0006238,4.29e-08,68;UBERON:0009663,5.28e-08,7;UBERON:0000007,1.05e-07,2;UBERON:0002771,1.28e-07,2;UBERON:0001873,2.12e-07,2;UBERON:0010122,2.12e-07,2;UBERON:0002148,2.25e-07,2;UBERON:0006331,2.25e-07,2;UBERON:0009662,2.25e-07,2;UBERON:0002780,2.25e-07,41;UBERON:0001890,2.25e-07,41;UBERON:0003080,2.25e-07,41;UBERON:0006240,2.25e-07,41;UBERON:0001017,9.97e-07,81;UBERON:0003075,9.97e-07,82;UBERON:0007284,9.97e-07,82 | |||
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|short_description=p@chr2:224462615..224462628,- | |short_description=p@chr2:224462615..224462628,- | ||
}} | }} |
Latest revision as of 07:07, 29 July 2015
Short description: | p@chr2:224462615..224462628, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224462615..224462628, - |
Coexpression cluster: | C708_smallcell_peripheral_gastrointestinal_neuroectodermal_Neurons_pituitary_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 8.58e-14 | 1 |
enteroendocrine cell | 8.58e-14 | 1 |
type D enteroendocrine cell | 8.58e-14 | 1 |
somatostatin secreting cell | 8.58e-14 | 1 |
pancreatic D cell | 8.58e-14 | 1 |
progenitor cell of endocrine pancreas | 8.58e-14 | 1 |
lung fibroblast | 9.73e-14 | 1 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 1.94e-17 | 3 |
dorsal striatum | 1.94e-17 | 3 |
putamen | 6.65e-14 | 1 |
corpus striatum | 2.51e-13 | 4 |
striatum | 2.51e-13 | 4 |
ventral part of telencephalon | 2.51e-13 | 4 |
future corpus striatum | 2.51e-13 | 4 |
neurectoderm | 4.52e-13 | 86 |
neural nucleus | 6.93e-13 | 9 |
nucleus of brain | 6.93e-13 | 9 |
regional part of nervous system | 1.14e-10 | 53 |
regional part of brain | 1.14e-10 | 53 |
neural tube | 4.45e-10 | 56 |
neural rod | 4.45e-10 | 56 |
future spinal cord | 4.45e-10 | 56 |
neural keel | 4.45e-10 | 56 |
brain grey matter | 8.83e-09 | 34 |
gray matter | 8.83e-09 | 34 |
brain | 4.29e-08 | 68 |
future brain | 4.29e-08 | 68 |
telencephalic nucleus | 5.28e-08 | 7 |
pituitary gland | 1.05e-07 | 2 |
middle temporal gyrus | 1.28e-07 | 2 |
caudate nucleus | 2.12e-07 | 2 |
future caudate nucleus | 2.12e-07 | 2 |
locus ceruleus | 2.25e-07 | 2 |
brainstem nucleus | 2.25e-07 | 2 |
hindbrain nucleus | 2.25e-07 | 2 |
regional part of forebrain | 2.25e-07 | 41 |
forebrain | 2.25e-07 | 41 |
anterior neural tube | 2.25e-07 | 41 |
future forebrain | 2.25e-07 | 41 |
central nervous system | 9.97e-07 | 81 |
neural plate | 9.97e-07 | 82 |
presumptive neural plate | 9.97e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.11e-20 | 10 |
somatostatinoma | 8.58e-14 | 1 |
germ cell and embryonal cancer | 2.39e-09 | 22 |
germ cell cancer | 2.39e-09 | 22 |
gastrointestinal system cancer | 9.56e-09 | 14 |