FFCP PHASE1:Hg19::chr3:38691158..38691203,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6331 | |EntrezGene=6331 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10593 | |HGNC=10593 | ||
|TSSclassifier=strong | |||
|UniProt=E9PEK2,E9PG18,E9PEF3,Q14524,Q86V90,E9PHB6 | |UniProt=E9PEK2,E9PG18,E9PEF3,Q14524,Q86V90,E9PHB6 | ||
|association_with_transcript=0bp_to_ENST00000413689,ENST00000425664,ENST00000443581,ENST00000451551,ENST00000491944,NM_000335,NM_001099404,NM_001099405,NM_001160160,NM_001160161,NM_198056,uc003cil.3,uc003cin.2,uc003cio.2,uc010hhi.2,uc010hhk.2,uc011ayr.1_5end | |association_with_transcript=0bp_to_ENST00000413689,ENST00000425664,ENST00000443581,ENST00000451551,ENST00000491944,NM_000335,NM_001099404,NM_001099405,NM_001160160,NM_001160161,NM_198056,uc003cil.3,uc003cin.2,uc003cio.2,uc010hhi.2,uc010hhk.2,uc011ayr.1_5end | ||
|cluster_id=chr3:38691158..38691203,- | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_1_at_SCN5A_5end | |description=CAGE_peak_1_at_SCN5A_5end | ||
|id=chr3:38691158..38691203,- | |id=chr3:38691158..38691203,- | ||
|ontology_enrichment_celltype=CL:0002139!1.49e-15!24;CL:0000115!1.63e-15!35;CL:0002078!5.85e-15!44;CL:0000222!6.77e-13!119;CL:0000071!7.67e-13!18;CL:0002546!7.67e-13!18;CL:0000213!1.05e-12!57;CL:0000215!1.05e-12!57;CL:0002321!5.83e-08!248;CL:0000220!1.77e-07!246;CL:1000449!2.68e-07!16;CL:1000413!2.94e-07!9 | |ontology_enrichment_celltype=CL:0002139!1.49e-15!24;CL:0000115!1.63e-15!35;CL:0002078!5.85e-15!44;CL:0000222!6.77e-13!119;CL:0000071!7.67e-13!18;CL:0002546!7.67e-13!18;CL:0000213!1.05e-12!57;CL:0000215!1.05e-12!57;CL:0002321!5.83e-08!248;CL:0000220!1.77e-07!246;CL:1000449!2.68e-07!16;CL:1000413!2.94e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;5.45e-20;24!CL:0000115;5.32e-18;36!CL:0000071;2.30e-16;18!CL:0002078;2.95e-13;45!CL:0000213;6.10e-11;58!CL:0000215;6.10e-11;58!CL:1000449;2.24e-09;15!CL:1000413;4.78e-09;9!CL:1000497;1.14e-07;17!CL:0002518;1.14e-07;17!CL:0002321;2.23e-07;15!CL:0002681;2.24e-07;12!CL:0002584;2.24e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.14e-21,36;CL:0002078,2.58e-20,45;CL:0002139,7.21e-20,24;CL:0000213,1.78e-17,58;CL:0000215,1.78e-17,58;CL:0000071,2.56e-16,18;CL:0002546,2.56e-16,18;CL:0000222,7.54e-15,121;CL:1000449,1.84e-09,15;CL:1000413,5.09e-09,9;CL:0002321,3.67e-08,250;CL:1000497,9.71e-08,17;CL:0002518,9.71e-08,17;CL:0002681,1.93e-07,12;CL:0002584,1.93e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;2.30e-16;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!9.04e-17!312;UBERON:0000483!3.37e-16!309;UBERON:0001986!7.67e-13!18;UBERON:0004638!7.67e-13!18;UBERON:0004852!7.67e-13!18;UBERON:0002049!1.47e-11!79;UBERON:0007798!1.47e-11!79;UBERON:0000487!3.78e-11!22;UBERON:0004111!1.17e-10!241;UBERON:0000468!2.30e-10!659;UBERON:0000025!2.53e-10!194;UBERON:0000477!4.26e-10!286;UBERON:0006914!1.15e-09!25;UBERON:0003914!2.76e-09!118;UBERON:0001009!5.41e-09!113;UBERON:0000481!6.26e-09!347;UBERON:0000055!1.38e-08!69;UBERON:0005743!1.59e-08!86;UBERON:0003056!2.24e-08!61;UBERON:0003075!2.42e-08!86;UBERON:0007284!2.42e-08!86;UBERON:0000467!2.85e-08!625;UBERON:0000480!4.28e-08!626;UBERON:0000475!7.14e-08!365;UBERON:0000080!7.47e-08!18;UBERON:0002120!7.47e-08!18;UBERON:0004875!7.47e-08!18;UBERON:0005721!7.47e-08!18;UBERON:0005754!7.47e-08!18;UBERON:0007297!7.47e-08!18;UBERON:0000073!7.62e-08!94;UBERON:0001016!7.62e-08!94;UBERON:0004535!8.01e-08!110;UBERON:0002346!8.36e-08!90;UBERON:0000033!1.07e-07!123;UBERON:0000922!1.28e-07!612;UBERON:0006555!1.53e-07!17;UBERON:0005103!1.53e-07!17;UBERON:0000083!1.53e-07!17;UBERON:0009201!1.53e-07!17;UBERON:0004819!1.53e-07!17;UBERON:0006553!1.53e-07!17;UBERON:0003074!1.53e-07!17;UBERON:0003060!1.53e-07!17;UBERON:0000153!1.87e-07!129;UBERON:0007811!1.87e-07!129;UBERON:0003103!2.17e-07!69;UBERON:0001017!2.56e-07!82;UBERON:0004211!2.68e-07!16;UBERON:0001285!2.68e-07!16;UBERON:0007684!2.68e-07!16;UBERON:0003220!2.68e-07!16;UBERON:0004208!2.68e-07!16;UBERON:0000490!2.85e-07!138;UBERON:0003915!2.94e-07!9;UBERON:0004700!2.94e-07!9;UBERON:0001917!2.94e-07!9;UBERON:0000058!3.19e-07!26;UBERON:0000064!3.52e-07!219;UBERON:0004876!5.50e-07!20;UBERON:0000970!6.91e-07!20;UBERON:0007625!6.96e-07!11;UBERON:0003886!7.71e-07!63;UBERON:0003887!8.74e-07!21;UBERON:0001981!9.25e-07!60;UBERON:0007500!9.25e-07!60;UBERON:0004537!9.25e-07!60;UBERON:0006965!9.25e-07!60 | |ontology_enrichment_uberon=UBERON:0000119!9.04e-17!312;UBERON:0000483!3.37e-16!309;UBERON:0001986!7.67e-13!18;UBERON:0004638!7.67e-13!18;UBERON:0004852!7.67e-13!18;UBERON:0002049!1.47e-11!79;UBERON:0007798!1.47e-11!79;UBERON:0000487!3.78e-11!22;UBERON:0004111!1.17e-10!241;UBERON:0000468!2.30e-10!659;UBERON:0000025!2.53e-10!194;UBERON:0000477!4.26e-10!286;UBERON:0006914!1.15e-09!25;UBERON:0003914!2.76e-09!118;UBERON:0001009!5.41e-09!113;UBERON:0000481!6.26e-09!347;UBERON:0000055!1.38e-08!69;UBERON:0005743!1.59e-08!86;UBERON:0003056!2.24e-08!61;UBERON:0003075!2.42e-08!86;UBERON:0007284!2.42e-08!86;UBERON:0000467!2.85e-08!625;UBERON:0000480!4.28e-08!626;UBERON:0000475!7.14e-08!365;UBERON:0000080!7.47e-08!18;UBERON:0002120!7.47e-08!18;UBERON:0004875!7.47e-08!18;UBERON:0005721!7.47e-08!18;UBERON:0005754!7.47e-08!18;UBERON:0007297!7.47e-08!18;UBERON:0000073!7.62e-08!94;UBERON:0001016!7.62e-08!94;UBERON:0004535!8.01e-08!110;UBERON:0002346!8.36e-08!90;UBERON:0000033!1.07e-07!123;UBERON:0000922!1.28e-07!612;UBERON:0006555!1.53e-07!17;UBERON:0005103!1.53e-07!17;UBERON:0000083!1.53e-07!17;UBERON:0009201!1.53e-07!17;UBERON:0004819!1.53e-07!17;UBERON:0006553!1.53e-07!17;UBERON:0003074!1.53e-07!17;UBERON:0003060!1.53e-07!17;UBERON:0000153!1.87e-07!129;UBERON:0007811!1.87e-07!129;UBERON:0003103!2.17e-07!69;UBERON:0001017!2.56e-07!82;UBERON:0004211!2.68e-07!16;UBERON:0001285!2.68e-07!16;UBERON:0007684!2.68e-07!16;UBERON:0003220!2.68e-07!16;UBERON:0004208!2.68e-07!16;UBERON:0000490!2.85e-07!138;UBERON:0003915!2.94e-07!9;UBERON:0004700!2.94e-07!9;UBERON:0001917!2.94e-07!9;UBERON:0000058!3.19e-07!26;UBERON:0000064!3.52e-07!219;UBERON:0004876!5.50e-07!20;UBERON:0000970!6.91e-07!20;UBERON:0007625!6.96e-07!11;UBERON:0003886!7.71e-07!63;UBERON:0003887!8.74e-07!21;UBERON:0001981!9.25e-07!60;UBERON:0007500!9.25e-07!60;UBERON:0004537!9.25e-07!60;UBERON:0006965!9.25e-07!60 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.30e-16;18!UBERON:0001986;2.30e-16;18!UBERON:0004852;2.30e-16;18!UBERON:0000487;8.82e-15;22!UBERON:0000490;3.05e-12;33!UBERON:0006914;6.01e-12;25!UBERON:0006555;2.24e-09;15!UBERON:0004819;2.24e-09;15!UBERON:0001285;2.24e-09;15!UBERON:0007684;2.24e-09;15!UBERON:0003915;4.78e-09;9!UBERON:0004700;4.78e-09;9!UBERON:0001917;4.78e-09;9!UBERON:0007625;1.51e-08;11!UBERON:0000353;5.67e-08;15!UBERON:0001134;7.57e-08;16!UBERON:0002036;7.57e-08;16!UBERON:0000970;8.64e-08;20!UBERON:0000019;1.80e-07;19!UBERON:0000047;1.80e-07;19!UBERON:0004088;1.80e-07;19!UBERON:0010230;1.80e-07;19!UBERON:0001225;2.24e-07;12!UBERON:0008987;2.24e-07;12!UBERON:0002104;3.72e-07;21!UBERON:0000020;5.58e-07;23 | |||
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| ||
|short_description=p1@SCN5A | |short_description=p1@SCN5A | ||
}} | }} |
Latest revision as of 03:26, 18 September 2015
Short description: | p1@SCN5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCN5A_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000413689, ENST00000425664, ENST00000443581, ENST00000451551, ENST00000491944, NM_000335, NM_001099404, NM_001099405, NM_001160160, NM_001160161, NM_198056, uc003cil.3, uc003cin.2, uc003cio.2, uc010hhi.2, uc010hhk.2, uc011ayr.1_5end |
EntrezGene: | SCN5A |
HGNC: | 10593 |
UniProt: | E9PEK2E9PG18E9PEF3Q14524Q86V90E9PHB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.14e-21 | 36 |
meso-epithelial cell | 2.58e-20 | 45 |
endothelial cell of vascular tree | 7.21e-20 | 24 |
lining cell | 1.78e-17 | 58 |
barrier cell | 1.78e-17 | 58 |
blood vessel endothelial cell | 2.56e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.56e-16 | 18 |
mesodermal cell | 7.54e-15 | 121 |
epithelial cell of nephron | 1.84e-09 | 15 |
endothelial cell of artery | 5.09e-09 | 9 |
embryonic cell | 3.67e-08 | 250 |
kidney cell | 9.71e-08 | 17 |
kidney epithelial cell | 9.71e-08 | 17 |
kidney cortical cell | 1.93e-07 | 12 |
renal cortical epithelial cell | 1.93e-07 | 12 |