FFCP PHASE1:Hg19::chr4:6324645..6324657,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5522 | |EntrezGene=5522 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=9306 | |HGNC=9306 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-174bp_to_BC045682_5end | |association_with_transcript=-174bp_to_BC045682_5end | ||
|cluster_id=chr4:6324645..6324657,- | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_15_at_PPP2R2C_5end | |description=CAGE_peak_15_at_PPP2R2C_5end | ||
|id=chr4:6324645..6324657,- | |id=chr4:6324645..6324657,- | ||
|ontology_enrichment_celltype=CL:0002144!1.73e-14!3;CL:0000181!2.60e-08!12;CL:0000417!2.60e-08!12;CL:0000668!2.60e-08!12;CL:0000414!2.60e-08!12;CL:0000412!2.60e-08!12;CL:0000182!2.60e-08!12 | |ontology_enrichment_celltype=CL:0002144!1.73e-14!3;CL:0000181!2.60e-08!12;CL:0000417!2.60e-08!12;CL:0000668!2.60e-08!12;CL:0000414!2.60e-08!12;CL:0000412!2.60e-08!12;CL:0000182!2.60e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.25e-37;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.26e-37,12;CL:0000223,1.46e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.13e-41;11!UBERON:0009497;7.97e-35;13!UBERON:0001041;4.23e-27;30!UBERON:0003104;6.78e-15;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;8.81e-14;4!DOID:7;8.45e-13;39!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,8.82e-14,4;DOID:7,2.67e-12,39;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:305,2.62e-08,106;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002619!2.32e-26!22;UBERON:0000956!3.18e-23!25;UBERON:0000203!3.18e-23!25;UBERON:0001950!2.96e-22!20;UBERON:0002021!1.39e-18!5;UBERON:0001869!4.09e-18!32;UBERON:0002791!1.48e-17!33;UBERON:0002020!4.97e-17!34;UBERON:0003528!4.97e-17!34;UBERON:0001893!4.97e-17!34;UBERON:0001915!1.73e-14!3;UBERON:0001982!1.73e-14!3;UBERON:0002780!4.84e-14!41;UBERON:0001890!4.84e-14!41;UBERON:0006240!4.84e-14!41;UBERON:0003080!1.08e-13!42;UBERON:0003112!2.68e-11!1;UBERON:0000032!2.68e-11!1;UBERON:0005253!2.68e-11!1;UBERON:0003128!2.68e-11!1;UBERON:0002241!2.68e-11!1;UBERON:0001703!2.68e-11!1;UBERON:0004761!2.68e-11!1;UBERON:0009617!2.68e-11!1;UBERON:0002581!5.43e-11!1;UBERON:0001049!6.52e-10!57;UBERON:0005068!6.52e-10!57;UBERON:0006241!6.52e-10!57;UBERON:0007135!6.52e-10!57;UBERON:0002616!1.50e-09!59;UBERON:0000025!3.16e-09!194;UBERON:0003056!3.27e-09!61;UBERON:0000349!8.17e-09!5;UBERON:0001872!1.04e-08!5;UBERON:0000955!6.36e-08!69;UBERON:0006238!6.36e-08!69;UBERON:0000200!2.18e-07!6;UBERON:0004111!5.79e-07!241 | |ontology_enrichment_uberon=UBERON:0002619!2.32e-26!22;UBERON:0000956!3.18e-23!25;UBERON:0000203!3.18e-23!25;UBERON:0001950!2.96e-22!20;UBERON:0002021!1.39e-18!5;UBERON:0001869!4.09e-18!32;UBERON:0002791!1.48e-17!33;UBERON:0002020!4.97e-17!34;UBERON:0003528!4.97e-17!34;UBERON:0001893!4.97e-17!34;UBERON:0001915!1.73e-14!3;UBERON:0001982!1.73e-14!3;UBERON:0002780!4.84e-14!41;UBERON:0001890!4.84e-14!41;UBERON:0006240!4.84e-14!41;UBERON:0003080!1.08e-13!42;UBERON:0003112!2.68e-11!1;UBERON:0000032!2.68e-11!1;UBERON:0005253!2.68e-11!1;UBERON:0003128!2.68e-11!1;UBERON:0002241!2.68e-11!1;UBERON:0001703!2.68e-11!1;UBERON:0004761!2.68e-11!1;UBERON:0009617!2.68e-11!1;UBERON:0002581!5.43e-11!1;UBERON:0001049!6.52e-10!57;UBERON:0005068!6.52e-10!57;UBERON:0006241!6.52e-10!57;UBERON:0007135!6.52e-10!57;UBERON:0002616!1.50e-09!59;UBERON:0000025!3.16e-09!194;UBERON:0003056!3.27e-09!61;UBERON:0000349!8.17e-09!5;UBERON:0001872!1.04e-08!5;UBERON:0000955!6.36e-08!69;UBERON:0006238!6.36e-08!69;UBERON:0000200!2.18e-07!6;UBERON:0004111!5.79e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.46e-24;19!UBERON:0006925;3.46e-24;19!UBERON:0002423;1.23e-18;25!UBERON:0002365;4.34e-14;31!UBERON:0002330;4.34e-14;31!UBERON:0002368;2.77e-13;33!UBERON:0000949;2.21e-10;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.46e-24,19;UBERON:0006925,3.46e-24,19;UBERON:0008836,3.46e-24,19;UBERON:0008835,4.90e-21,22;UBERON:0003894,4.90e-21,22;UBERON:0009854,3.62e-20,23;UBERON:0007499,1.23e-18,25;UBERON:0009497,1.23e-18,25;UBERON:0000015,1.23e-18,25;UBERON:0002423,1.23e-18,25;UBERON:0006235,1.23e-18,25;UBERON:0004161,1.23e-18,25;UBERON:0009856,5.83e-18,26;UBERON:0002365,3.16e-15,31;UBERON:0002330,3.16e-15,31;UBERON:0002368,1.35e-13,35;UBERON:0000949,8.78e-11,45;UBERON:0005911,1.66e-10,82;UBERON:0001041,5.98e-10,87;UBERON:0003929,3.93e-09,54;UBERON:0005172,3.93e-09,54;UBERON:0005173,3.93e-09,54;UBERON:0005177,1.11e-08,101;UBERON:0002530,1.98e-08,59;UBERON:0002417,2.64e-08,60;UBERON:0000916,2.64e-08,60;UBERON:0009569,6.64e-08,112;UBERON:0004921,1.75e-07,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0.659215496907038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57566364614447,1.40106959247983,1.48287796479207,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0.252071696221718,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.7517067048829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0.659215496907038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57566364614447,1.40106959247983,1.48287796479207,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0.252071696221718,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.7517067048829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@PPP2R2C | |short_description=p15@PPP2R2C | ||
}} | }} |
Latest revision as of 04:51, 18 September 2015
Short description: | p15@PPP2R2C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_PPP2R2C_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -174bp_to_BC045682_5end |
EntrezGene: | PPP2R2C |
HGNC: | 9306 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.26e-37 | 12 |
endodermal cell | 1.46e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 3.46e-24 | 19 |
digestive gland | 3.46e-24 | 19 |
liver bud | 3.46e-24 | 19 |
hepatic diverticulum | 4.90e-21 | 22 |
liver primordium | 4.90e-21 | 22 |
digestive tract diverticulum | 3.62e-20 | 23 |
epithelial sac | 1.23e-18 | 25 |
epithelium of foregut-midgut junction | 1.23e-18 | 25 |
anatomical boundary | 1.23e-18 | 25 |
hepatobiliary system | 1.23e-18 | 25 |
foregut-midgut junction | 1.23e-18 | 25 |
septum transversum | 1.23e-18 | 25 |
sac | 5.83e-18 | 26 |
exocrine gland | 3.16e-15 | 31 |
exocrine system | 3.16e-15 | 31 |
endocrine gland | 1.35e-13 | 35 |
endocrine system | 8.78e-11 | 45 |
endo-epithelium | 1.66e-10 | 82 |
foregut | 5.98e-10 | 87 |
gut epithelium | 3.93e-09 | 54 |
abdomen element | 3.93e-09 | 54 |
abdominal segment element | 3.93e-09 | 54 |
trunk region element | 1.11e-08 | 101 |
gland | 1.98e-08 | 59 |
abdominal segment of trunk | 2.64e-08 | 60 |
abdomen | 2.64e-08 | 60 |
subdivision of trunk | 6.64e-08 | 112 |
subdivision of digestive tract | 1.75e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.82e-14 | 4 |
disease of anatomical entity | 2.67e-12 | 39 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 7.48e-07 | 9 |