FFCP PHASE1:Hg19::chr6:34208414..34208429,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3159 | |EntrezGene=3159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5010 | |HGNC=5010 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-84bp_to_uc003ojd.2_5end | |association_with_transcript=-84bp_to_uc003ojd.2_5end | ||
|cluster_id=chr6:34208414..34208429,+ | |||
|coexpression_cluster_id=C133 | |||
|description=CAGE_peak_16_at_HMGA1_5end | |description=CAGE_peak_16_at_HMGA1_5end | ||
|id=chr6:34208414..34208429,+ | |id=chr6:34208414..34208429,+ | ||
|ontology_enrichment_celltype=CL:0000239!1.02e-08!3;CL:1000615!1.02e-08!3;CL:0002306!1.02e-08!3;CL:0002591!1.65e-07!1;CL:0002681!2.93e-07!13;CL:0002584!2.93e-07!13;CL:0002379!3.82e-07!1;CL:0000083!5.00e-07!4;CL:0000342!5.78e-07!1;CL:0002565!5.78e-07!1 | |ontology_enrichment_celltype=CL:0000239!1.02e-08!3;CL:1000615!1.02e-08!3;CL:0002306!1.02e-08!3;CL:0002591!1.65e-07!1;CL:0002681!2.93e-07!13;CL:0002584!2.93e-07!13;CL:0002379!3.82e-07!1;CL:0000083!5.00e-07!4;CL:0000342!5.78e-07!1;CL:0002565!5.78e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002591;3.99e-50;1!CL:0000083;1.13e-13;4!CL:0002543;1.44e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,3.99e-50,1;CL:0000083,1.29e-13,4;CL:0002543,1.32e-09,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3620!3.82e-07!1;DOID:3565!3.82e-07!1;DOID:1793!5.00e-07!4;DOID:5662!6.12e-07!1 | |ontology_enrichment_disease=DOID:3620!3.82e-07!1;DOID:3565!3.82e-07!1;DOID:1793!5.00e-07!4;DOID:5662!6.12e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3493;4.32e-26;2!DOID:4929;7.14e-26;2!DOID:1793;1.13e-13;4!DOID:170;1.44e-09;6!DOID:299;5.27e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,4.32e-26,2;DOID:4929,9.18e-26,2;DOID:1793,1.29e-13,4;DOID:170,1.57e-09,6;DOID:299,5.49e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0006853!1.02e-08!3;UBERON:0007685!1.02e-08!3;UBERON:0004134!1.02e-08!3;UBERON:0001225!2.93e-07!13;UBERON:0008987!2.93e-07!13;UBERON:0002506!5.78e-07!1;UBERON:0001769!5.78e-07!1 | |ontology_enrichment_uberon=UBERON:0006853!1.02e-08!3;UBERON:0007685!1.02e-08!3;UBERON:0004134!1.02e-08!3;UBERON:0001225!2.93e-07!13;UBERON:0008987!2.93e-07!13;UBERON:0002506!5.78e-07!1;UBERON:0001769!5.78e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000078;7.14e-26;2!UBERON:0002012;7.14e-26;2!UBERON:0008886;7.14e-26;2!UBERON:0001638;8.37e-07;9!UBERON:0003920;8.37e-07;9!UBERON:0004582;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,7.14e-26,2;UBERON:0007497,7.14e-26,2;UBERON:0003643,7.14e-26,2;UBERON:0003504,7.14e-26,2;UBERON:0003469,7.14e-26,2;UBERON:0003496,7.14e-26,2;UBERON:0002012,7.14e-26,2;UBERON:0008886,7.14e-26,2;UBERON:0007303,7.14e-26,2;UBERON:0002061,7.14e-26,2;UBERON:0005432,7.14e-26,2;UBERON:0004363,7.14e-26,2;UBERON:0004145,9.46e-18,3;UBERON:0003498,3.26e-11,5;UBERON:0005985,3.26e-11,5;UBERON:0010188,1.44e-09,6;UBERON:0002539,1.44e-09,6;UBERON:0003351,1.44e-09,6;UBERON:0008816,1.44e-09,6;UBERON:0001638,7.91e-07,9;UBERON:0003920,7.91e-07,9;UBERON:0004582,7.91e-07,9;UBERON:0000485,8.37e-07,9 | |||
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|short_description=p16@HMGA1 | |short_description=p16@HMGA1 | ||
}} | }} |
Latest revision as of 08:53, 18 September 2015
Short description: | p16@HMGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_HMGA1_5end |
Coexpression cluster: | C133_signet_gall_small_kidney_colon_ductal_adenocarcinoma |
Association with transcript: | -84bp_to_uc003ojd.2_5end |
EntrezGene: | HMGA1 |
HGNC: | 5010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 3.99e-50 | 1 |
epithelial cell of pancreas | 1.29e-13 | 4 |
vein endothelial cell | 1.32e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 7.14e-26 | 2 |
developing epithelial placode | 7.14e-26 | 2 |
respiratory system arterial blood vessel | 7.14e-26 | 2 |
respiratory system blood vessel | 7.14e-26 | 2 |
respiratory system artery | 7.14e-26 | 2 |
head blood vessel | 7.14e-26 | 2 |
pulmonary artery | 7.14e-26 | 2 |
pulmonary vascular system | 7.14e-26 | 2 |
pharyngeal vasculature | 7.14e-26 | 2 |
truncus arteriosus | 7.14e-26 | 2 |
aortic sac | 7.14e-26 | 2 |
pharyngeal arch artery | 7.14e-26 | 2 |
outflow tract | 9.46e-18 | 3 |
heart blood vessel | 3.26e-11 | 5 |
coronary vessel | 3.26e-11 | 5 |
protuberance | 1.44e-09 | 6 |
pharyngeal arch | 1.44e-09 | 6 |
pharyngeal epithelium | 1.44e-09 | 6 |
embryonic head | 1.44e-09 | 6 |
vein | 7.91e-07 | 9 |
venous blood vessel | 7.91e-07 | 9 |
venous system | 7.91e-07 | 9 |
simple columnar epithelium | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 4.32e-26 | 2 |
tubular adenocarcinoma | 9.18e-26 | 2 |
pancreatic cancer | 1.29e-13 | 4 |
endocrine gland cancer | 1.57e-09 | 6 |
adenocarcinoma | 5.49e-09 | 25 |