FFCP PHASE1:Hg19::chr14:55034385..55034400,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23034 | |EntrezGene=23034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23023 | |HGNC=23023 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=35bp_to_ENST00000555112_5end | |association_with_transcript=35bp_to_ENST00000555112_5end | ||
|cluster_id=chr14:55034385..55034400,+ | |||
|description=CAGE_peak_20_at_SAMD4A_5end | |description=CAGE_peak_20_at_SAMD4A_5end | ||
|id=chr14:55034385..55034400,+ | |id=chr14:55034385..55034400,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000307;1.81e-07;3!CL:0000632;2.55e-07;3!CL:0002592;2.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.82e-07,3;CL:0000069,1.82e-07,3;CL:0000307,1.82e-07,3;CL:0000377,1.82e-07,3;CL:0000632,2.05e-07,3;CL:0002592,2.19e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.47e-19;1!CL:0000377;1.81e-07;3!UBERON:0006241;2.55e-07;3!UBERON:0003057;2.55e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3571;2.47e-19;1!DOID:3350;2.37e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.30e-19,1;DOID:3350,1.72e-10,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.47e-19;1!UBERON:0001153;2.47e-19;1!UBERON:0009854;2.47e-19;1!UBERON:0002148;2.37e-10;2!UBERON:0006331;2.37e-10;2!UBERON:0009662;2.37e-10;2!UBERON:0000988;2.55e-07;3!UBERON:0002240;2.55e-07;3!UBERON:0003498;2.55e-07;3!UBERON:0005174;2.55e-07;3!UBERON:0005985;2.55e-07;3!UBERON:0001621;2.55e-07;3!UBERON:0001137;2.55e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.88e-19,1;UBERON:0001153,1.88e-19,1;UBERON:0001045,1.88e-19,1;UBERON:0002148,1.57e-10,2;UBERON:0006331,1.57e-10,2;UBERON:0009662,1.57e-10,2;UBERON:0000988,1.93e-07,3;UBERON:0001621,2.19e-07,3;UBERON:0002240,2.47e-07,3;UBERON:0005174,2.47e-07,3;UBERON:0001137,2.47e-07,3 | |||
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| ||
|short_description=p20@SAMD4A | |short_description=p20@SAMD4A | ||
}} | }} |
Latest revision as of 07:56, 20 September 2015
Short description: | p20@SAMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SAMD4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENST00000555112_5end |
EntrezGene: | SAMD4A |
HGNC: | 23023 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.82e-07 | 3 |
branched duct epithelial cell | 1.82e-07 | 3 |
tracheal epithelial cell | 1.82e-07 | 3 |
tracheoblast | 1.82e-07 | 3 |
hepatic stellate cell | 2.05e-07 | 3 |
smooth muscle cell of the coronary artery | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.88e-19 | 1 |
caecum | 1.88e-19 | 1 |
midgut | 1.88e-19 | 1 |
locus ceruleus | 1.57e-10 | 2 |
brainstem nucleus | 1.57e-10 | 2 |
hindbrain nucleus | 1.57e-10 | 2 |
pons | 1.93e-07 | 3 |
coronary artery | 2.19e-07 | 3 |
spinal cord | 2.47e-07 | 3 |
dorsal region element | 2.47e-07 | 3 |
dorsum | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.30e-19 | 1 |
mesenchymal cell neoplasm | 1.72e-10 | 2 |