FFCP PHASE1:Hg19::chr17:46682321..46682362,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:46682321..46682362,-
|short_description=p1@HOXB6
|description=CAGE_peak_1_at_HOXB6_5end
|association_with_transcript=0bp_to_ENST00000225648,ENST0000048430...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3216 | |EntrezGene=3216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5117 | |HGNC=5117 | ||
|TSSclassifier=strong | |||
|UniProt=P17509 | |UniProt=P17509 | ||
|association_with_transcript=0bp_to_ENST00000225648,ENST00000484302,NM_018952,uc002ins.1,uc010dbh.1_5end | |||
|cluster_id=chr17:46682321..46682362,- | |||
|description=CAGE_peak_1_at_HOXB6_5end | |||
|id=chr17:46682321..46682362,- | |||
|ontology_enrichment_celltype=CL:0000066!3.88e-14!254;CL:1000497!1.45e-09!18;CL:0002518!1.45e-09!18;CL:1000449!9.02e-09!16;CL:0000222!1.64e-08!119;CL:1000507!2.47e-08!12;CL:1000494!2.47e-08!12;CL:0000213!7.19e-08!57;CL:0000215!7.19e-08!57;CL:0002078!6.38e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000497;8.55e-12;17!CL:0002518;8.55e-12;17!CL:1000449;6.45e-11;15!CL:1000507;9.97e-10;10!CL:1000494;9.97e-10;10!CL:0002681;1.95e-08;12!CL:0002584;1.95e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.86e-14,253;CL:1000497,8.65e-12,17;CL:0002518,8.65e-12,17;CL:1000449,6.27e-11,15;CL:1000507,9.98e-10,10;CL:1000494,9.98e-10,10;CL:0000222,1.21e-08,121;CL:0000213,1.70e-08,58;CL:0000215,1.70e-08,58;CL:0002681,1.90e-08,12;CL:0002584,1.90e-08,12;CL:0002078,3.48e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.19e-13!143;DOID:305!4.22e-10!106;DOID:162!5.02e-09!235;DOID:14566!5.69e-09!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.78e-15,143;DOID:305,3.04e-11,106;DOID:14566,5.20e-11,239;DOID:162,5.70e-11,235 | |||
|ontology_enrichment_uberon=UBERON:0002100!7.39e-14!216;UBERON:0000489!6.89e-13!32;UBERON:0000058!6.26e-12!26;UBERON:0001008!6.48e-12!45;UBERON:0003104!7.45e-12!238;UBERON:0009142!7.45e-12!238;UBERON:0006554!2.15e-11!44;UBERON:0003064!1.94e-10!37;UBERON:0002113!2.05e-10!27;UBERON:0003918!2.05e-10!27;UBERON:0005095!2.05e-10!27;UBERON:0007687!2.05e-10!27;UBERON:0002417!2.17e-10!61;UBERON:0000916!2.17e-10!61;UBERON:0000080!2.82e-10!18;UBERON:0002120!2.82e-10!18;UBERON:0004875!2.82e-10!18;UBERON:0005721!2.82e-10!18;UBERON:0005754!2.82e-10!18;UBERON:0007297!2.82e-10!18;UBERON:0005177!4.76e-10!107;UBERON:0009569!1.01e-09!113;UBERON:0003886!1.25e-09!63;UBERON:0006555!1.64e-09!17;UBERON:0005103!1.64e-09!17;UBERON:0000083!1.64e-09!17;UBERON:0009201!1.64e-09!17;UBERON:0004819!1.64e-09!17;UBERON:0006553!1.64e-09!17;UBERON:0003074!1.64e-09!17;UBERON:0003060!1.64e-09!17;UBERON:0004876!2.11e-09!20;UBERON:0003887!4.55e-09!21;UBERON:0004211!9.02e-09!16;UBERON:0001285!9.02e-09!16;UBERON:0007684!9.02e-09!16;UBERON:0003220!9.02e-09!16;UBERON:0004208!9.02e-09!16;UBERON:0009773!2.47e-08!12;UBERON:0001231!2.47e-08!12;UBERON:0004810!2.47e-08!12;UBERON:0005256!7.84e-08!143;UBERON:0005172!7.99e-08!55;UBERON:0005173!7.99e-08!55;UBERON:0001851!9.21e-08!16;UBERON:0002553!1.41e-07!70;UBERON:0005409!2.63e-07!35;UBERON:0000466!3.47e-07!126;UBERON:0000464!4.29e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;5.42e-14;29!UBERON:0006554;1.26e-13;30!UBERON:0001008;1.26e-13;30!UBERON:0002113;3.44e-11;24!UBERON:0011143;3.44e-11;24!UBERON:0006555;6.45e-11;15!UBERON:0004819;6.45e-11;15!UBERON:0001285;6.45e-11;15!UBERON:0007684;6.45e-11;15!UBERON:0004211;9.97e-10;10!UBERON:0009773;9.97e-10;10!UBERON:0001231;9.97e-10;10!UBERON:0004810;9.97e-10;10!UBERON:0001851;1.22e-09;15!UBERON:0001225;1.95e-08;12!UBERON:0008987;1.95e-08;12!UBERON:0005409;8.23e-08;22!UBERON:0000353;1.16e-07;15!UBERON:0000059;3.12e-07;11!UBERON:0001473;5.65e-07;8!UBERON:0004536;5.65e-07;8!UBERON:0006558;5.65e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.30e-15,31;UBERON:0003104,5.98e-14,160;UBERON:0009142,5.98e-14,160;UBERON:0002100,1.33e-13,199;UBERON:0002113,8.55e-13,26;UBERON:0003918,8.55e-13,26;UBERON:0011143,8.55e-13,26;UBERON:0005095,8.55e-13,26;UBERON:0007687,8.55e-13,26;UBERON:0006555,8.79e-12,16;UBERON:0004819,8.79e-12,16;UBERON:0001008,1.29e-11,48;UBERON:0002417,2.82e-11,60;UBERON:0000916,2.82e-11,60;UBERON:0006554,4.55e-11,47;UBERON:0004211,6.27e-11,15;UBERON:0009773,6.27e-11,15;UBERON:0001231,6.27e-11,15;UBERON:0001285,6.27e-11,15;UBERON:0007684,6.27e-11,15;UBERON:0004208,6.27e-11,15;UBERON:0004810,9.98e-10,10;UBERON:0001851,1.12e-09,15;UBERON:0009569,5.04e-09,112;UBERON:0001225,1.90e-08,12;UBERON:0008987,1.90e-08,12;UBERON:0005172,2.06e-08,54;UBERON:0005173,2.06e-08,54;UBERON:0000058,8.98e-08,19;UBERON:0000353,1.11e-07,15;UBERON:0005177,2.79e-07,101;UBERON:0000059,3.06e-07,11;UBERON:0001473,5.54e-07,8;UBERON:0004536,5.54e-07,8;UBERON:0006558,5.54e-07,8;UBERON:0003064,6.94e-07,28;UBERON:0005409,9.58e-07,25 | |||
|phase1_expression=3.63356758541113,9.63452357509424,12.9678051768293,19.0139266870948,23.241976910219,2.61701557230111,5.06599756336621,1.26343974685366,4.70134130759709,1.22866968250754,0,0,0.263766978228454,20.6689809443278,23.529213676682,2.6893005858071,3.01347264011988,1.46062018077475,1.46379839637152,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,4.71524671791765,0,0,0,0,0,0,0,0,0,0,0.694281003215189,0,0,0.550236083880135,0.417989933073621,34.3694289695207,22.4132745492627,32.8026200509377,11.2792208790561,23.5684352772739,1.22031028774085,13.971197053143,8.91156142669936,22.0570328861677,20.8812316542338,13.7386006189653,4.5994991239765,15.1882505530901,7.14486801328588,0,0,0,0.496971951695318,0.25326102332916,5.29636723252875,1.72101972449288,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0.570471821544449,4.48346041655403,7.51580791320095,7.93177427403845,6.74163872170793,0,0,0,0,0,22.7540340484507,22.2771623963034,0,0,0,0,0,0,0.113432183160021,0.89694817844431,0.213557388818567,1.05965950579781,13.2040082277137,6.69841440049853,3.09168648054755,2.41951913231067,36.118135099631,29.1336645431984,5.3011092591264,1.65689817556139,0,2.4850671476163,2.82105875037393,0,0,0,0,0,0,0.232387885739037,0.310983165046111,0.252320850875628,0,0,0,1.38134921352481,2.78620756819187,1.44375896333917,10.1743848034266,12.1380976856233,8.43538604592187,12.0220430278309,8.06153943141903,8.54174228799948,7.55055325696921,8.63374446551523,5.00171304030308,0.738155454624648,2.80483547606892,1.2347220339942,0,0,0,1.18157981336281,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,15.1584770149128,12.5006088395685,10.8444866773721,0,0,0,0,0,0,0.16798212819886,0,0.358234090811393,0,0,0.985326475791887,0.352193736052904,0.829312462163088,0.432359860250884,0,2.03193261734941,6.875791660049,2.34434894420094,6.84289784090821,3.59896224461632,10.2116639666932,5.43070221998099,0,0,0,8.27338980849778,25.0359512096318,0,0.26593811658487,0,0.257207374262142,15.6034045225606,0.532844358032199,1.14382394926518,30.3868099019208,12.3486050517115,0.65147236858747,0.355391948742546,3.95975936466715,5.12446941001296,7.84380112740265,7.39800134747222,0,0,0,0,0,4.27910715122155,7.52862794671412,2.26023954805422,6.62525563987614,0,0,0,0,0,0,0,0,0,0,0,0,24.7836813272663,38.5131301215951,18.7172866352818,0,0,0,0,0,0,4.1389228517002,1.32845119707087,0.737476674166813,0,0,0.343143423810856,0,0,0,0,0,0,4.96215615637554,12.276957863045,7.85848264412606,15.2485587614284,20.9799972117348,11.4206284011961,1.48418066444991,4.93471020168498,1.9531789784444,6.98080826117378,1.55776328755086,4.88083589531829,0,7.61924587152482,1.74953878978203,0,0,0.786746489756545,46.022360516556,24.2598311878907,54.9044838423799,35.0734139167826,41.2706868971144,20.4720091327614,36.5701466344509,8.85255256018771,13.880452742126,36.0358761933324,46.6571489685014,23.9583696662336,20.7769002232181,44.1033266802691,0,0,0,0,0,5.66725564062472,8.42439076328759,8.9110259914235,0,0.650060246036521,0,1.93341436584244,2.15668063960502,1.38153307253517,2.75673144969061,0.214840489736547,0.145016693914229,4.34655799822115,0.178064071293475,0,0,0,0,0.464845549297286,3.77774816196768,0,2.46426864140871,0,0,0,0,0.372158369359667,2.21465597303108,1.14378116354295,1.02359116524534,0,0,0,6.65528093058265,16.7467588138993,10.8387410158032,0,0,0,0,7.06769119930725,6.33900880540533,1.09199929126389,0,0,0,0,0,3.47265320560013,0,8.92805658635898,4.3375289733965,2.25356482025793,14.1977238682011,5.60019533774791,5.7067368237,1.06428319221179,0,0,0,0,0.0962221127255121,0.670302275535787,0,4.5189024372854,15.067688043493,11.7930032967338,3.10401107475673,5.28363820476007,0,0,0,0,0,0,0,0,0,0,10.7817695031654,0,0,0,0,0,0,0,0,0,0,0,20.0507581672054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.3695621371535,3.36968812325356,5.58258400047762,0,132.975716705401,0,0.890894042497916,0,0,0,0,0,0.211125408127993,3.38721580026819,32.8777859482066,0.755798243562828,0,0,0,24.8935332678095,14.3216939740487,0,4.63624006493588,0,3.33410970433911,0,0,0,0,0,5.79999660347835,0,0,16.0743623602197,0,0,0.520874984799877,0,0,0,0,0,0,12.7458002317218,4.0432885840795,7.61807559187591,3.30431961956303,0,0,0,0,0.732780747214898,0,0,0,0,8.1214437822185,6.07793856384993,7.04850665298539,0.37950746544837,0,5.69694774225673,1.63232808159148,0,22.0716412536933,52.7488823471608,13.7109224980176,50.1044718845573,0,0,0,0,1.60515529459758,0,0,0,24.0352575738752,123.11033368901,0,0.91821828489147,0.126373159256976,4.50970258243478,13.9979058386284,5.31723098165748,7.61281498513647,5.96472544973728,8.36307008410712,0.853828638089378,10.955299168038,0,4.50765028106137,12.6235849541584,52.5927271408511,9.97518988335376,9.19185147246309,11.036486880014,11.98885672976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| ||
|short_description=p1@HOXB6 | |||
}} | }} |
Latest revision as of 07:27, 25 September 2015
Short description: | p1@HOXB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXB6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000225648, ENST00000484302, NM_018952, uc002ins.1, uc010dbh.1_5end |
EntrezGene: | HOXB6 |
HGNC: | 5117 |
UniProt: | P17509 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.86e-14 | 253 |
kidney cell | 8.65e-12 | 17 |
kidney epithelial cell | 8.65e-12 | 17 |
epithelial cell of nephron | 6.27e-11 | 15 |
kidney tubule cell | 9.98e-10 | 10 |
nephron tubule epithelial cell | 9.98e-10 | 10 |
mesodermal cell | 1.21e-08 | 121 |
lining cell | 1.70e-08 | 58 |
barrier cell | 1.70e-08 | 58 |
kidney cortical cell | 1.90e-08 | 12 |
renal cortical epithelial cell | 1.90e-08 | 12 |
meso-epithelial cell | 3.48e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.78e-15 | 143 |
carcinoma | 3.04e-11 | 106 |
disease of cellular proliferation | 5.20e-11 | 239 |
cancer | 5.70e-11 | 235 |