FFCP PHASE1:Hg19::chr17:46687959..46688007,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:46687959..46688007,-
|short_description=p2@HOXB7
|description=CAGE_peak_2_at_HOXB7_5end
|association_with_transcript=0bp_to_S49765_5end
|EntrezGene=3217
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3217 | |EntrezGene=3217 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5118 | |HGNC=5118 | ||
|TSSclassifier=strong | |||
|UniProt=P09629 | |UniProt=P09629 | ||
|association_with_transcript=0bp_to_S49765_5end | |||
|cluster_id=chr17:46687959..46688007,- | |||
|description=CAGE_peak_2_at_HOXB7_5end | |||
|id=chr17:46687959..46688007,- | |||
|ontology_enrichment_celltype=CL:0000066!1.05e-14!254;CL:0000222!1.03e-07!119;CL:0000136!2.13e-07!15;CL:1000497!3.33e-07!18;CL:0002518!3.33e-07!18;CL:0000213!6.55e-07!57;CL:0000215!6.55e-07!57;CL:1000449!8.89e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.73e-08;17!CL:0002518;3.73e-08;17!CL:1000449;1.17e-07;15!CL:0000136;1.34e-07;13!CL:0002681;3.50e-07;12!CL:0002584;3.50e-07;12!CL:0002334;4.33e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.41e-16,253;CL:0000222,1.20e-08,121;CL:0000136,1.81e-08,15;CL:1000497,3.94e-08,17;CL:0002518,3.94e-08,17;CL:0000213,6.03e-08,58;CL:0000215,6.03e-08,58;CL:1000449,1.24e-07,15;CL:0002334,3.79e-07,12;CL:0002681,5.00e-07,12;CL:0002584,5.00e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.09e-16!143;DOID:162!3.22e-15!235;DOID:14566!4.47e-15!239;DOID:305!1.22e-13!106;DOID:299!8.11e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;2.40e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.07e-16,143;DOID:162,2.14e-16,235;DOID:14566,3.15e-16,239;DOID:305,3.41e-15,106;DOID:299,2.20e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0002100!4.55e-12!216;UBERON:0003104!7.23e-10!238;UBERON:0009142!7.23e-10!238;UBERON:0009569!1.17e-09!113;UBERON:0001008!5.73e-09!45;UBERON:0006554!1.79e-08!44;UBERON:0000489!2.56e-08!32;UBERON:0005177!2.77e-08!107;UBERON:0003886!3.32e-08!63;UBERON:0002417!6.00e-08!61;UBERON:0000916!6.00e-08!61;UBERON:0003064!6.41e-08!37;UBERON:0000080!1.11e-07!18;UBERON:0002120!1.11e-07!18;UBERON:0004875!1.11e-07!18;UBERON:0005721!1.11e-07!18;UBERON:0005754!1.11e-07!18;UBERON:0007297!1.11e-07!18;UBERON:0000058!1.83e-07!26;UBERON:0005409!1.90e-07!35;UBERON:0003887!3.60e-07!21;UBERON:0002113!3.68e-07!27;UBERON:0003918!3.68e-07!27;UBERON:0005095!3.68e-07!27;UBERON:0007687!3.68e-07!27;UBERON:0006555!4.35e-07!17;UBERON:0005103!4.35e-07!17;UBERON:0000083!4.35e-07!17;UBERON:0009201!4.35e-07!17;UBERON:0004819!4.35e-07!17;UBERON:0006553!4.35e-07!17;UBERON:0003074!4.35e-07!17;UBERON:0003060!4.35e-07!17;UBERON:0001737!5.13e-07!9;UBERON:0001851!5.56e-07!16;UBERON:0004876!7.12e-07!20;UBERON:0004921!7.80e-07!129;UBERON:0004185!7.80e-07!129;UBERON:0004211!8.89e-07!16;UBERON:0001285!8.89e-07!16;UBERON:0007684!8.89e-07!16;UBERON:0003220!8.89e-07!16;UBERON:0004208!8.89e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.31e-08;30!UBERON:0001008;1.31e-08;30!UBERON:0001737;4.67e-08;9!UBERON:0001557;4.67e-08;9!UBERON:0001851;4.99e-08;15!UBERON:0000489;1.02e-07;29!UBERON:0006555;1.17e-07;15!UBERON:0004819;1.17e-07;15!UBERON:0001285;1.17e-07;15!UBERON:0007684;1.17e-07;15!UBERON:0000353;3.11e-07;15!UBERON:0001225;3.50e-07;12!UBERON:0008987;3.50e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.20e-13,199;UBERON:0003104,1.96e-09,160;UBERON:0009142,1.96e-09,160;UBERON:0000489,1.06e-08,31;UBERON:0009569,1.80e-08,112;UBERON:0001737,5.11e-08,9;UBERON:0006555,5.33e-08,16;UBERON:0004819,5.33e-08,16;UBERON:0001851,7.02e-08,15;UBERON:0002417,8.45e-08,60;UBERON:0000916,8.45e-08,60;UBERON:0004211,1.24e-07,15;UBERON:0009773,1.24e-07,15;UBERON:0001231,1.24e-07,15;UBERON:0001285,1.24e-07,15;UBERON:0007684,1.24e-07,15;UBERON:0004208,1.24e-07,15;UBERON:0002113,2.42e-07,26;UBERON:0003918,2.42e-07,26;UBERON:0011143,2.42e-07,26;UBERON:0005095,2.42e-07,26;UBERON:0007687,2.42e-07,26;UBERON:0001008,3.11e-07,48;UBERON:0000353,3.96e-07,15;UBERON:0001225,5.00e-07,12;UBERON:0008987,5.00e-07,12;UBERON:0006554,9.59e-07,47 | |||
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| ||
|short_description=p2@HOXB7 | |||
}} | }} |
Latest revision as of 07:30, 25 September 2015
Short description: | p2@HOXB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXB7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_S49765_5end |
EntrezGene: | HOXB7 |
HGNC: | 5118 |
UniProt: | P09629 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.41e-16 | 253 |
mesodermal cell | 1.20e-08 | 121 |
fat cell | 1.81e-08 | 15 |
kidney cell | 3.94e-08 | 17 |
kidney epithelial cell | 3.94e-08 | 17 |
lining cell | 6.03e-08 | 58 |
barrier cell | 6.03e-08 | 58 |
epithelial cell of nephron | 1.24e-07 | 15 |
preadipocyte | 3.79e-07 | 12 |
kidney cortical cell | 5.00e-07 | 12 |
renal cortical epithelial cell | 5.00e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.20e-13 | 199 |
mesenchyme | 1.96e-09 | 160 |
entire embryonic mesenchyme | 1.96e-09 | 160 |
cavitated compound organ | 1.06e-08 | 31 |
subdivision of trunk | 1.80e-08 | 112 |
larynx | 5.11e-08 | 9 |
excretory tube | 5.33e-08 | 16 |
kidney epithelium | 5.33e-08 | 16 |
cortex | 7.02e-08 | 15 |
abdominal segment of trunk | 8.45e-08 | 60 |
abdomen | 8.45e-08 | 60 |
nephron epithelium | 1.24e-07 | 15 |
renal tubule | 1.24e-07 | 15 |
nephron tubule | 1.24e-07 | 15 |
nephron | 1.24e-07 | 15 |
uriniferous tubule | 1.24e-07 | 15 |
nephrogenic mesenchyme | 1.24e-07 | 15 |
kidney | 2.42e-07 | 26 |
kidney mesenchyme | 2.42e-07 | 26 |
upper urinary tract | 2.42e-07 | 26 |
kidney rudiment | 2.42e-07 | 26 |
kidney field | 2.42e-07 | 26 |
renal system | 3.11e-07 | 48 |
parenchyma | 3.96e-07 | 15 |
cortex of kidney | 5.00e-07 | 12 |
renal parenchyma | 5.00e-07 | 12 |
urinary system structure | 9.59e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.07e-16 | 143 |
cancer | 2.14e-16 | 235 |
disease of cellular proliferation | 3.15e-16 | 239 |
carcinoma | 3.41e-15 | 106 |
adenocarcinoma | 2.20e-07 | 25 |