FFCP PHASE1:Hg19::chr17:61228693..61228707,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:61228693..61228707,+ | |||
|coexpression_cluster_id=C361 | |||
|description=CAGE_peak_at_chr17:61228693..61228707,+ | |description=CAGE_peak_at_chr17:61228693..61228707,+ | ||
|id=chr17:61228693..61228707,+ | |id=chr17:61228693..61228707,+ | ||
|ontology_enrichment_celltype=CL:0002605!1.90e-07!3 | |ontology_enrichment_celltype=CL:0002605!1.90e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000047;8.82e-51;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.51e-13,8 | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.62e-26;1!UBERON:0006241;1.53e-09;3!UBERON:0003056;1.53e-09;3!UBERON:0003057;1.53e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!4.76e-51!86;UBERON:0001049!3.58e-50!57;UBERON:0005068!3.58e-50!57;UBERON:0006241!3.58e-50!57;UBERON:0007135!3.58e-50!57;UBERON:0000073!1.55e-49!94;UBERON:0001016!1.55e-49!94;UBERON:0001017!5.38e-49!82;UBERON:0002780!2.05e-47!41;UBERON:0001890!2.05e-47!41;UBERON:0006240!2.05e-47!41;UBERON:0003080!4.34e-46!42;UBERON:0002616!4.51e-45!59;UBERON:0001893!1.79e-43!34;UBERON:0002020!6.02e-43!34;UBERON:0003528!6.02e-43!34;UBERON:0003075!6.60e-42!86;UBERON:0007284!6.60e-42!86;UBERON:0002791!2.14e-41!33;UBERON:0002346!1.69e-39!90;UBERON:0001869!2.75e-39!32;UBERON:0000955!1.58e-38!69;UBERON:0006238!1.58e-38!69;UBERON:0007023!1.76e-34!115;UBERON:0003056!1.20e-33!61;UBERON:0000956!1.18e-32!25;UBERON:0000203!1.18e-32!25;UBERON:0002619!4.44e-27!22;UBERON:0004121!1.19e-26!169;UBERON:0000924!1.04e-25!173;UBERON:0006601!1.04e-25!173;UBERON:0000153!8.55e-25!129;UBERON:0007811!8.55e-25!129;UBERON:0000033!1.05e-23!123;UBERON:0001950!3.82e-23!20;UBERON:0000025!9.83e-13!194;UBERON:0000349!1.16e-12!5;UBERON:0002420!3.69e-12!9;UBERON:0007245!3.69e-12!9;UBERON:0010009!3.69e-12!9;UBERON:0010011!3.69e-12!9;UBERON:0000454!3.69e-12!9;UBERON:0002308!1.39e-11!9;UBERON:0000125!1.39e-11!9;UBERON:0001871!1.27e-10!7;UBERON:0000475!2.21e-10!365;UBERON:0000483!3.19e-10!309;UBERON:0002298!3.59e-10!8;UBERON:0000119!5.41e-10!312;UBERON:0004111!6.46e-10!241;UBERON:0001872!1.76e-08!5;UBERON:0000477!3.13e-08!286;UBERON:0009663!5.31e-08!7;UBERON:0000481!7.73e-08!347;UBERON:0000988!1.26e-07!3;UBERON:0006331!1.58e-07!3;UBERON:0000064!2.47e-07!219;UBERON:0003076!7.61e-07!15;UBERON:0003057!7.61e-07!15 | |ontology_enrichment_uberon=UBERON:0005743!4.76e-51!86;UBERON:0001049!3.58e-50!57;UBERON:0005068!3.58e-50!57;UBERON:0006241!3.58e-50!57;UBERON:0007135!3.58e-50!57;UBERON:0000073!1.55e-49!94;UBERON:0001016!1.55e-49!94;UBERON:0001017!5.38e-49!82;UBERON:0002780!2.05e-47!41;UBERON:0001890!2.05e-47!41;UBERON:0006240!2.05e-47!41;UBERON:0003080!4.34e-46!42;UBERON:0002616!4.51e-45!59;UBERON:0001893!1.79e-43!34;UBERON:0002020!6.02e-43!34;UBERON:0003528!6.02e-43!34;UBERON:0003075!6.60e-42!86;UBERON:0007284!6.60e-42!86;UBERON:0002791!2.14e-41!33;UBERON:0002346!1.69e-39!90;UBERON:0001869!2.75e-39!32;UBERON:0000955!1.58e-38!69;UBERON:0006238!1.58e-38!69;UBERON:0007023!1.76e-34!115;UBERON:0003056!1.20e-33!61;UBERON:0000956!1.18e-32!25;UBERON:0000203!1.18e-32!25;UBERON:0002619!4.44e-27!22;UBERON:0004121!1.19e-26!169;UBERON:0000924!1.04e-25!173;UBERON:0006601!1.04e-25!173;UBERON:0000153!8.55e-25!129;UBERON:0007811!8.55e-25!129;UBERON:0000033!1.05e-23!123;UBERON:0001950!3.82e-23!20;UBERON:0000025!9.83e-13!194;UBERON:0000349!1.16e-12!5;UBERON:0002420!3.69e-12!9;UBERON:0007245!3.69e-12!9;UBERON:0010009!3.69e-12!9;UBERON:0010011!3.69e-12!9;UBERON:0000454!3.69e-12!9;UBERON:0002308!1.39e-11!9;UBERON:0000125!1.39e-11!9;UBERON:0001871!1.27e-10!7;UBERON:0000475!2.21e-10!365;UBERON:0000483!3.19e-10!309;UBERON:0002298!3.59e-10!8;UBERON:0000119!5.41e-10!312;UBERON:0004111!6.46e-10!241;UBERON:0001872!1.76e-08!5;UBERON:0000477!3.13e-08!286;UBERON:0009663!5.31e-08!7;UBERON:0000481!7.73e-08!347;UBERON:0000988!1.26e-07!3;UBERON:0006331!1.58e-07!3;UBERON:0000064!2.47e-07!219;UBERON:0003076!7.61e-07!15;UBERON:0003057!7.61e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0005162;8.49e-50;2!UBERON:0000122;8.49e-50;2!UBERON:0002336;7.62e-26;1!UBERON:0003112;7.62e-26;1!UBERON:0000941;7.62e-26;1!UBERON:0001785;7.62e-26;1!UBERON:0002464;7.62e-26;1!UBERON:0004904;7.62e-26;1!UBERON:0011215;7.62e-26;1!UBERON:0001018;7.62e-26;1!UBERON:0011158;7.62e-26;1!UBERON:0001021;7.62e-26;1!UBERON:0002473;7.62e-26;1!UBERON:0005340;7.62e-26;1!UBERON:0003544;7.62e-26;1!UBERON:0005970;7.62e-26;1!UBERON:0002316;7.62e-26;1!UBERON:0001020;7.62e-26;1!UBERON:0003128;7.62e-26;1!UBERON:0002437;7.62e-26;1!UBERON:0001703;7.62e-26;1!UBERON:0002241;7.62e-26;1!UBERON:0003714;1.21e-13;2!UBERON:0002240;1.53e-09;3!UBERON:0005174;1.53e-09;3!UBERON:0001137;1.53e-09;3!UBERON:0001016;1.33e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,1.09e-49,2;UBERON:0000122,1.09e-49,2;UBERON:0000941,5.93e-26,1;UBERON:0001785,5.93e-26,1;UBERON:0002464,5.93e-26,1;UBERON:0004904,5.93e-26,1;UBERON:0001021,5.93e-26,1;UBERON:0003902,5.93e-26,1;UBERON:0005425,5.93e-26,1;UBERON:0003112,9.79e-26,1;UBERON:0011158,9.79e-26,1;UBERON:0003128,9.79e-26,1;UBERON:0001703,9.79e-26,1;UBERON:0002241,9.79e-26,1;UBERON:0004761,9.79e-26,1;UBERON:0009617,9.79e-26,1;UBERON:0002336,1.26e-25,1;UBERON:0011215,1.26e-25,1;UBERON:0001018,1.26e-25,1;UBERON:0002473,1.26e-25,1;UBERON:0005340,1.26e-25,1;UBERON:0003544,1.26e-25,1;UBERON:0005970,1.26e-25,1;UBERON:0002316,1.26e-25,1;UBERON:0001020,1.26e-25,1;UBERON:0002437,1.26e-25,1;UBERON:0003714,1.07e-13,2;UBERON:0005253,1.37e-13,2;UBERON:0001016,8.14e-10,89;UBERON:0002240,1.54e-09,3;UBERON:0005174,1.54e-09,3;UBERON:0001137,1.54e-09,3;UBERON:0001017,1.03e-07,81;UBERON:0001781,1.69e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.11464947822898,3.90419561572865,0.773288812777695,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.676695028044854,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855877976067841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07841812769083,0,0.468528891450678,0,0,0.971121518136371,0,0,0.61214552326098,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.696418755514666,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.364497339948148,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0.221858103073705,0.993542447062135,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.385375350578757,0,0,0.82046545696302,0.756215088665154,0.207471757392654,1.13032951942296,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.317079050969534,2.18789923607288,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.40781839786099,0.526182188502793,0,0,0.313972371402056,0.157115589916002,0,0,0,0,0.929195074296532,0,0,1.56472445072321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0.329821550236287,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.407948941145488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.517164979309476,0.426467963801962,0.23806443146374,0,0,0,0,0.202117188958219,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.11464947822898,3.90419561572865,0.773288812777695,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.676695028044854,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855877976067841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07841812769083,0,0.468528891450678,0,0,0.971121518136371,0,0,0.61214552326098,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.696418755514666,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.364497339948148,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0.221858103073705,0.993542447062135,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.385375350578757,0,0,0.82046545696302,0.756215088665154,0.207471757392654,1.13032951942296,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.317079050969534,2.18789923607288,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.40781839786099,0.526182188502793,0,0,0.313972371402056,0.157115589916002,0,0,0,0,0.929195074296532,0,0,1.56472445072321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0.329821550236287,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0,1.2679671827502,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.407948941145488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.517164979309476,0.426467963801962,0.23806443146374,0,0,0,0,0.202117188958219,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:61228693..61228707,+ | |short_description=p@chr17:61228693..61228707,+ | ||
}} | }} |
Latest revision as of 19:42, 25 July 2015
Short description: | p@chr17:61228693..61228707, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:61228693..61228707, + |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.51e-13 | 8 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 1.09e-49 | 2 |
neuron projection bundle | 1.09e-49 | 2 |
cranial nerve II | 5.93e-26 | 1 |
cranial nerve | 5.93e-26 | 1 |
nerve trunk | 5.93e-26 | 1 |
nerve connecting eye with brain | 5.93e-26 | 1 |
nerve | 5.93e-26 | 1 |
retinal neural layer | 5.93e-26 | 1 |
presumptive neural retina | 5.93e-26 | 1 |
olfactory region | 9.79e-26 | 1 |
primary subdivision of skull | 9.79e-26 | 1 |
cranium | 9.79e-26 | 1 |
neurocranium | 9.79e-26 | 1 |
chondrocranium | 9.79e-26 | 1 |
cartilaginous neurocranium | 9.79e-26 | 1 |
head paraxial mesoderm | 9.79e-26 | 1 |
corpus callosum | 1.26e-25 | 1 |
central nervous system cell part cluster | 1.26e-25 | 1 |
axon tract | 1.26e-25 | 1 |
intercerebral commissure | 1.26e-25 | 1 |
dorsal telencephalic commissure | 1.26e-25 | 1 |
brain white matter | 1.26e-25 | 1 |
brain commissure | 1.26e-25 | 1 |
white matter | 1.26e-25 | 1 |
nervous system commissure | 1.26e-25 | 1 |
cerebral hemisphere white matter | 1.26e-25 | 1 |
neural tissue | 1.07e-13 | 2 |
head mesenchyme | 1.37e-13 | 2 |
nervous system | 8.14e-10 | 89 |
spinal cord | 1.54e-09 | 3 |
dorsal region element | 1.54e-09 | 3 |
dorsum | 1.54e-09 | 3 |
central nervous system | 1.03e-07 | 81 |
layer of retina | 1.69e-07 | 4 |