FFCP PHASE1:Hg19::chr12:46662513..46662549,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |EntrezGene=81539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |HGNC=13447 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_ENST00000551506_5end | |association_with_transcript=39bp_to_ENST00000551506_5end | ||
|cluster_id=chr12:46662513..46662549,- | |||
|coexpression_cluster_id=C3280 | |coexpression_cluster_id=C3280 | ||
|description=CAGE_peak_2_at_SLC38A1_5end | |description=CAGE_peak_2_at_SLC38A1_5end | ||
|id=chr12:46662513..46662549,- | |id=chr12:46662513..46662549,- | ||
|ontology_enrichment_celltype=CL:0000066!1.47e-26!254;CL:0000548!2.78e-23!679;CL:0000004!2.78e-23!679;CL:0000255!2.78e-23!679;CL:0000012!4.94e-23!682;CL:0000063!1.19e-18!578;CL:0000003!6.17e-16!722;CL:0002076!1.14e-09!43;CL:0000223!3.52e-09!59;CL:0000144!1.67e-08!625;CL:0000076!1.75e-07!62;CL:0002321!4.58e-07!248;CL:0000220!9.89e-07!246 | |ontology_enrichment_celltype=CL:0000066!1.47e-26!254;CL:0000548!2.78e-23!679;CL:0000004!2.78e-23!679;CL:0000255!2.78e-23!679;CL:0000012!4.94e-23!682;CL:0000063!1.19e-18!578;CL:0000003!6.17e-16!722;CL:0002076!1.14e-09!43;CL:0000223!3.52e-09!59;CL:0000144!1.67e-08!625;CL:0000076!1.75e-07!62;CL:0002321!4.58e-07!248;CL:0000220!9.89e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.24e-08;42!CL:0002251;6.58e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.83e-26,253;CL:0002076,1.87e-10,42;CL:0000223,8.40e-10,58;CL:0002321,2.40e-07,250;CL:0000076,6.13e-07,63;CL:0002251,7.69e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.29e-26!235;DOID:14566!1.08e-25!239;DOID:0050687!3.70e-19!143;DOID:305!8.35e-18!106;DOID:0050686!1.06e-12!137 | |ontology_enrichment_disease=DOID:162!5.29e-26!235;DOID:14566!1.08e-25!239;DOID:0050687!3.70e-19!143;DOID:305!8.35e-18!106;DOID:0050686!1.06e-12!137 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.52e-26,235;DOID:14566,1.33e-25,239;DOID:0050687,4.25e-19,143;DOID:305,1.02e-17,106;DOID:0050686,1.08e-12,137 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.55e-08!169;UBERON:0000925!7.55e-08!169;UBERON:0006595!7.55e-08!169 | |ontology_enrichment_uberon=UBERON:0004119!7.55e-08!169;UBERON:0000925!7.55e-08!169;UBERON:0006595!7.55e-08!169 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.33e-07,160;UBERON:0000925,8.33e-07,160;UBERON:0006595,8.33e-07,160 | |||
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| ||
|short_description=p2@SLC38A1 | |short_description=p2@SLC38A1 | ||
}} | }} |
Latest revision as of 10:47, 18 September 2015
Short description: | p2@SLC38A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC38A1_5end |
Coexpression cluster: | C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet |
Association with transcript: | 39bp_to_ENST00000551506_5end |
EntrezGene: | SLC38A1 |
HGNC: | 13447 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.83e-26 | 253 |
endo-epithelial cell | 1.87e-10 | 42 |
endodermal cell | 8.40e-10 | 58 |
embryonic cell | 2.40e-07 | 250 |
squamous epithelial cell | 6.13e-07 | 63 |
epithelial cell of alimentary canal | 7.69e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.33e-07 | 160 |
endoderm | 8.33e-07 | 160 |
presumptive endoderm | 8.33e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.52e-26 | 235 |
disease of cellular proliferation | 1.33e-25 | 239 |
cell type cancer | 4.25e-19 | 143 |
carcinoma | 1.02e-17 | 106 |
organ system cancer | 1.08e-12 | 137 |